Wall clock time and date at job start Mon Mar 30 2020 00:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99730 * 2 1 4 4 H 1.48501 * 109.47268 * 270.00007 * 3 2 1 5 5 H 1.48503 * 109.47301 * 30.00374 * 3 2 1 6 6 H 1.48506 * 109.46872 * 150.00038 * 3 2 1 7 7 C 1.37880 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99871 * 0.02562 * 7 2 1 10 10 N 1.46890 * 109.46914 * 185.35055 * 9 7 2 11 11 C 1.46900 * 111.00066 * 184.02622 * 10 9 7 12 12 C 1.53002 * 109.47428 * 170.00031 * 11 10 9 13 13 C 1.53123 * 109.52210 * 175.00112 * 12 11 10 14 14 C 1.53036 * 109.27564 * 177.55919 * 13 12 11 15 15 N 1.46848 * 109.52492 * 300.82150 * 14 13 12 16 16 C 1.46847 * 111.19601 * 61.74681 * 15 14 13 17 17 C 1.53044 * 109.51874 * 298.25381 * 16 15 14 18 18 C 1.46900 * 111.00239 * 60.07696 * 10 9 7 19 19 C 1.54269 * 110.03223 * 31.88899 * 18 10 9 20 20 C 1.54960 * 104.16165 * 217.13877 * 19 18 10 21 21 C 1.54891 * 102.77775 * 37.89070 * 20 19 18 22 22 C 1.53877 * 110.02921 * 274.67643 * 18 10 9 23 23 H 0.96998 * 119.99854 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46650 * 65.35502 * 9 7 2 25 25 H 1.09000 * 109.47045 * 305.35272 * 9 7 2 26 26 H 1.08999 * 109.46951 * 49.99795 * 11 10 9 27 27 H 1.09001 * 109.47100 * 290.00600 * 11 10 9 28 28 H 1.09000 * 109.57231 * 54.84217 * 12 11 10 29 29 H 1.08994 * 109.50365 * 57.62308 * 13 12 11 30 30 H 1.09004 * 109.50120 * 297.50025 * 13 12 11 31 31 H 1.09001 * 109.46424 * 180.79997 * 14 13 12 32 32 H 1.09000 * 109.45949 * 60.83926 * 14 13 12 33 33 H 1.00902 * 110.99602 * 185.83711 * 15 14 13 34 34 H 1.08997 * 109.46868 * 58.26806 * 16 15 14 35 35 H 1.09002 * 109.45942 * 178.24667 * 16 15 14 36 36 H 1.09003 * 109.50387 * 299.24073 * 17 16 15 37 37 H 1.09001 * 109.49745 * 179.12318 * 17 16 15 38 38 H 1.08992 * 110.01949 * 153.28378 * 18 10 9 39 39 H 1.08999 * 110.48515 * 335.78672 * 19 18 10 40 40 H 1.09004 * 110.48556 * 98.42834 * 19 18 10 41 41 H 1.08994 * 110.72281 * 279.57472 * 20 19 18 42 42 H 1.09003 * 110.92354 * 156.29088 * 20 19 18 43 43 H 1.08994 * 110.49020 * 203.40254 * 21 20 19 44 44 H 1.09004 * 110.60085 * 80.81798 * 21 20 19 45 45 H 1.09002 * 110.02998 * 238.56533 * 22 18 10 46 46 H 1.08996 * 110.03360 * 359.97438 * 22 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2004 -3.6126 0.1303 11 6 1.5104 -4.9062 0.0382 12 6 2.5439 -6.0288 -0.0734 13 6 1.8323 -7.3843 -0.0439 14 6 2.8646 -8.5007 -0.2170 15 7 3.5684 -8.3248 -1.4938 16 6 4.2981 -7.0509 -1.5267 17 6 3.3084 -5.8911 -1.3928 18 6 2.9633 -3.5109 1.3815 19 6 2.0967 -2.8563 2.4771 20 6 3.0926 -1.9744 3.2718 21 6 4.0183 -1.4175 2.1618 22 6 4.1848 -2.5968 1.1812 23 1 -0.4850 0.8400 0.0004 24 1 0.6987 -2.5997 -0.9338 25 1 0.5541 -2.5164 0.8384 26 1 0.8690 -4.9139 -0.8431 27 1 0.9033 -5.0585 0.9306 28 1 3.2427 -5.9660 0.7608 29 1 1.1058 -7.4316 -0.8550 30 1 1.3211 -7.5062 0.9111 31 1 2.3596 -9.4666 -0.2107 32 1 3.5828 -8.4614 0.6020 33 1 4.1872 -9.1008 -1.6754 34 1 5.0095 -7.0183 -0.7016 35 1 4.8339 -6.9637 -2.4719 36 1 2.6051 -5.9149 -2.2252 37 1 3.8519 -4.9463 -1.4017 38 1 3.2865 -4.5009 1.7030 39 1 1.3161 -2.2413 2.0294 40 1 1.6600 -3.6176 3.1237 41 1 3.6597 -2.5766 3.9816 42 1 2.5728 -1.1644 3.7835 43 1 4.9831 -1.1289 2.5787 44 1 3.5505 -0.5691 1.6622 45 1 5.1008 -3.1431 1.4063 46 1 4.2117 -2.2291 0.1555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207437802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:43 Heat of formation + Delta-G solvation = 5.909027 kcal Electronic energy + Delta-G solvation = -22120.308251 eV Core-core repulsion = 19237.412563 eV Total energy + Delta-G solvation = -2882.895688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.20630 -37.96536 -34.50894 -32.83390 -31.59848 -30.59577 -28.00983 -27.49658 -26.89508 -24.41281 -22.78520 -21.92160 -21.17209 -19.78997 -19.49096 -18.01985 -16.74871 -16.44134 -15.19132 -14.89477 -14.51598 -14.47987 -14.07393 -13.93529 -13.76996 -13.07732 -12.88989 -12.64238 -12.24040 -12.14958 -12.00628 -11.50512 -11.34747 -11.02353 -10.98614 -10.83810 -10.53599 -10.34535 -10.27318 -10.24915 -10.13813 -10.05145 -10.01139 -9.70273 -9.38938 -9.14885 -8.76572 -8.44431 -8.37503 -7.04033 -5.97961 -3.95406 3.32256 3.39639 3.40568 4.25467 4.44490 4.84347 5.01520 5.09339 5.22435 5.37586 5.38277 5.49577 5.51533 5.56418 5.62395 5.69712 5.80725 5.87730 5.92301 6.03873 6.16320 6.19527 6.23962 6.33243 6.36059 6.42226 6.46481 6.49407 6.59757 6.66804 6.73363 6.75650 6.82052 6.84891 7.07070 7.08403 7.12008 7.32775 7.37496 7.49542 7.63477 7.95761 8.18668 8.30424 8.65866 9.12030 9.66457 11.13501 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.025201 B = 0.005564 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.789245 B = 5031.414325 C = 5298.158993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.270 1.270 7 C -0.504 4.504 8 H 0.084 0.916 9 C 0.185 3.815 10 N -0.529 5.529 11 C 0.061 3.939 12 C -0.083 4.083 13 C -0.113 4.113 14 C 0.061 3.939 15 N -0.691 5.691 16 C 0.056 3.944 17 C -0.100 4.100 18 C 0.098 3.902 19 C -0.166 4.166 20 C -0.111 4.111 21 C -0.126 4.126 22 C -0.104 4.104 23 H 0.259 0.741 24 H 0.022 0.978 25 H 0.006 0.994 26 H 0.065 0.935 27 H 0.019 0.981 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.335 0.665 34 H 0.025 0.975 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.118 0.882 40 H 0.035 0.965 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.039 0.961 44 H 0.090 0.910 45 H 0.036 0.964 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.821 -12.631 1.936 14.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.711 3.289 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.195 1.195 7 C -0.543 4.543 8 H 0.102 0.898 9 C 0.060 3.940 10 N -0.252 5.252 11 C -0.068 4.068 12 C -0.102 4.102 13 C -0.152 4.152 14 C -0.069 4.069 15 N -0.322 5.322 16 C -0.073 4.073 17 C -0.138 4.138 18 C -0.011 4.011 19 C -0.204 4.204 20 C -0.149 4.149 21 C -0.164 4.164 22 C -0.142 4.142 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.024 0.976 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.152 0.848 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.136 0.864 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.108 0.892 45 H 0.055 0.945 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.444 -12.220 1.210 13.868 hybrid contribution 0.493 0.669 1.372 1.604 sum 6.937 -11.551 2.582 13.719 Atomic orbital electron populations 1.69958 1.05971 1.26432 1.51715 1.24949 0.94690 0.98914 0.95999 0.86764 0.80013 0.84015 0.78117 1.20831 1.21531 1.19451 1.21640 0.94597 0.89494 1.48551 0.89843 1.19893 0.90516 0.87710 0.95849 1.62392 1.27921 1.01669 1.33235 1.22033 0.94795 0.90290 0.99677 1.21230 0.97374 0.93414 0.98149 1.21631 0.97807 0.94175 1.01547 1.21884 0.96328 0.98892 0.89748 1.60308 1.33632 1.04466 1.33786 1.22013 0.95237 0.90008 1.00012 1.21492 0.97940 0.97161 0.97191 1.22046 0.94018 0.96433 0.88641 1.23312 1.00756 0.99257 0.97114 1.22248 0.97320 0.98403 0.96910 1.22551 0.97514 0.99965 0.96352 1.22217 0.95197 0.95529 1.01271 0.93174 0.95961 0.97641 0.91611 0.96255 0.91838 0.91222 0.92102 0.91338 0.95660 0.84762 0.95696 0.91232 0.91716 0.90001 0.92842 0.86442 0.94641 0.93703 0.92809 0.94221 0.89184 0.94534 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 3 Si 0.88 20.98 28.62 -169.99 -4.87 16.11 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.16 6.68 56.52 0.38 -5.78 16 7 C -0.50 -13.02 5.83 -34.44 -0.20 -13.22 16 8 H 0.08 2.10 3.29 -52.49 -0.17 1.92 16 9 C 0.19 4.56 4.20 -4.98 -0.02 4.53 16 10 N -0.53 -10.74 3.89 -226.75 -0.88 -11.63 16 11 C 0.06 1.08 4.32 -3.82 -0.02 1.06 16 12 C -0.08 -1.22 2.19 -90.50 -0.20 -1.42 16 13 C -0.11 -1.44 5.38 -26.65 -0.14 -1.59 16 14 C 0.06 0.68 6.55 -3.83 -0.03 0.66 16 15 N -0.69 -7.90 6.85 -113.81 -0.78 -8.68 16 16 C 0.06 0.69 6.55 -3.83 -0.03 0.66 16 17 C -0.10 -1.46 5.24 -26.65 -0.14 -1.60 16 18 C 0.10 1.86 2.71 -66.59 -0.18 1.67 16 19 C -0.17 -3.31 5.73 -25.03 -0.14 -3.45 16 20 C -0.11 -2.03 6.91 -24.70 -0.17 -2.20 16 21 C -0.13 -2.42 6.18 -25.07 -0.16 -2.58 16 22 C -0.10 -1.97 5.64 -25.61 -0.14 -2.11 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.02 0.60 8.05 -51.93 -0.42 0.19 16 25 H 0.01 0.16 5.78 -51.93 -0.30 -0.14 16 26 H 0.07 1.21 8.01 -51.93 -0.42 0.79 16 27 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 28 H 0.06 0.98 6.15 -51.93 -0.32 0.66 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.34 3.11 8.90 -39.29 -0.35 2.76 16 34 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.33 7.84 -51.93 -0.41 0.92 16 38 H 0.05 0.95 5.82 -51.93 -0.30 0.65 16 39 H 0.12 2.79 4.11 -51.93 -0.21 2.58 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.98 4.57 -51.93 -0.24 1.74 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.82 5.86 -51.93 -0.30 1.51 16 LS Contribution 328.93 15.07 4.96 4.96 Total: -1.00 -27.10 328.93 -10.59 -37.69 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.09 Total: 4.95 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.66 Total: -18.19 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.93 Total: -45.52 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.87 Total: 16.11 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.10 -10.59 -37.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207437802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.597 kcal (2) G-P(sol) polarization free energy of solvation -27.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds