Wall clock time and date at job start Mon Mar 30 2020 00:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99730 * 2 1 4 4 H 1.48501 * 109.47268 * 270.00007 * 3 2 1 5 5 H 1.48503 * 109.47301 * 30.00374 * 3 2 1 6 6 H 1.48506 * 109.46872 * 150.00038 * 3 2 1 7 7 C 1.37880 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99871 * 0.02562 * 7 2 1 10 10 N 1.46890 * 109.46914 * 185.35055 * 9 7 2 11 11 C 1.46900 * 111.00066 * 184.02622 * 10 9 7 12 12 C 1.53002 * 109.47428 * 170.00031 * 11 10 9 13 13 C 1.53123 * 109.52210 * 175.00112 * 12 11 10 14 14 C 1.53036 * 109.27564 * 177.55919 * 13 12 11 15 15 N 1.46848 * 109.52492 * 300.82150 * 14 13 12 16 16 C 1.46847 * 111.19601 * 61.74681 * 15 14 13 17 17 C 1.53044 * 109.51874 * 298.25381 * 16 15 14 18 18 C 1.46900 * 111.00239 * 60.07696 * 10 9 7 19 19 C 1.54269 * 110.03223 * 31.88899 * 18 10 9 20 20 C 1.54960 * 104.16165 * 217.13877 * 19 18 10 21 21 C 1.54891 * 102.77775 * 37.89070 * 20 19 18 22 22 C 1.53877 * 110.02921 * 274.67643 * 18 10 9 23 23 H 0.96998 * 119.99854 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46650 * 65.35502 * 9 7 2 25 25 H 1.09000 * 109.47045 * 305.35272 * 9 7 2 26 26 H 1.08999 * 109.46951 * 49.99795 * 11 10 9 27 27 H 1.09001 * 109.47100 * 290.00600 * 11 10 9 28 28 H 1.09000 * 109.57231 * 54.84217 * 12 11 10 29 29 H 1.08994 * 109.50365 * 57.62308 * 13 12 11 30 30 H 1.09004 * 109.50120 * 297.50025 * 13 12 11 31 31 H 1.09001 * 109.46424 * 180.79997 * 14 13 12 32 32 H 1.09000 * 109.45949 * 60.83926 * 14 13 12 33 33 H 1.00902 * 110.99602 * 185.83711 * 15 14 13 34 34 H 1.08997 * 109.46868 * 58.26806 * 16 15 14 35 35 H 1.09002 * 109.45942 * 178.24667 * 16 15 14 36 36 H 1.09003 * 109.50387 * 299.24073 * 17 16 15 37 37 H 1.09001 * 109.49745 * 179.12318 * 17 16 15 38 38 H 1.08992 * 110.01949 * 153.28378 * 18 10 9 39 39 H 1.08999 * 110.48515 * 335.78672 * 19 18 10 40 40 H 1.09004 * 110.48556 * 98.42834 * 19 18 10 41 41 H 1.08994 * 110.72281 * 279.57472 * 20 19 18 42 42 H 1.09003 * 110.92354 * 156.29088 * 20 19 18 43 43 H 1.08994 * 110.49020 * 203.40254 * 21 20 19 44 44 H 1.09004 * 110.60085 * 80.81798 * 21 20 19 45 45 H 1.09002 * 110.02998 * 238.56533 * 22 18 10 46 46 H 1.08996 * 110.03360 * 359.97438 * 22 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2004 -3.6126 0.1303 11 6 1.5104 -4.9062 0.0382 12 6 2.5439 -6.0288 -0.0734 13 6 1.8323 -7.3843 -0.0439 14 6 2.8646 -8.5007 -0.2170 15 7 3.5684 -8.3248 -1.4938 16 6 4.2981 -7.0509 -1.5267 17 6 3.3084 -5.8911 -1.3928 18 6 2.9633 -3.5109 1.3815 19 6 2.0967 -2.8563 2.4771 20 6 3.0926 -1.9744 3.2718 21 6 4.0183 -1.4175 2.1618 22 6 4.1848 -2.5968 1.1812 23 1 -0.4850 0.8400 0.0004 24 1 0.6987 -2.5997 -0.9338 25 1 0.5541 -2.5164 0.8384 26 1 0.8690 -4.9139 -0.8431 27 1 0.9033 -5.0585 0.9306 28 1 3.2427 -5.9660 0.7608 29 1 1.1058 -7.4316 -0.8550 30 1 1.3211 -7.5062 0.9111 31 1 2.3596 -9.4666 -0.2107 32 1 3.5828 -8.4614 0.6020 33 1 4.1872 -9.1008 -1.6754 34 1 5.0095 -7.0183 -0.7016 35 1 4.8339 -6.9637 -2.4719 36 1 2.6051 -5.9149 -2.2252 37 1 3.8519 -4.9463 -1.4017 38 1 3.2865 -4.5009 1.7030 39 1 1.3161 -2.2413 2.0294 40 1 1.6600 -3.6176 3.1237 41 1 3.6597 -2.5766 3.9816 42 1 2.5728 -1.1644 3.7835 43 1 4.9831 -1.1289 2.5787 44 1 3.5505 -0.5691 1.6622 45 1 5.1008 -3.1431 1.4063 46 1 4.2117 -2.2291 0.1555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207437802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:42 Heat of formation + Delta-G solvation = -10.977491 kcal Electronic energy + Delta-G solvation = -22121.040505 eV Core-core repulsion = 19237.412563 eV Total energy + Delta-G solvation = -2883.627943 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.66418 -39.19170 -35.95155 -34.75279 -33.02968 -31.61321 -29.57322 -29.36781 -28.34522 -25.98576 -23.95333 -23.55798 -22.49221 -21.31145 -20.68271 -19.57767 -18.63586 -17.47344 -16.81429 -16.63738 -16.27576 -15.49053 -15.40698 -15.32753 -14.89872 -14.73152 -14.46714 -13.89227 -13.75881 -13.72221 -13.14970 -13.11599 -12.88061 -12.75133 -12.61340 -12.20627 -12.05078 -11.94640 -11.83560 -11.70332 -11.63638 -11.56650 -11.18940 -11.12973 -10.96710 -10.85951 -10.58948 -10.48238 -9.32385 -8.76395 -8.08270 -6.10601 1.41438 1.43000 1.51720 2.45769 3.26905 3.33639 3.38884 3.84434 3.96205 3.97680 4.02811 4.10025 4.32180 4.38481 4.49375 4.55379 4.58595 4.61721 4.79066 4.80357 4.82561 4.84484 4.95118 4.98025 5.00255 5.04231 5.05586 5.11948 5.16695 5.23021 5.24622 5.32910 5.33780 5.40259 5.49735 5.58935 5.61814 5.75359 5.84809 5.92997 6.15011 6.23373 6.50575 6.60934 6.83132 7.06059 7.55732 9.03970 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.025201 B = 0.005564 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.789245 B = 5031.414325 C = 5298.158993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.003 3.997 3 Si 0.940 3.060 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.201 3.799 10 N -0.529 5.529 11 C 0.062 3.938 12 C -0.072 4.072 13 C -0.111 4.111 14 C 0.064 3.936 15 N -0.699 5.699 16 C 0.063 3.937 17 C -0.097 4.097 18 C 0.098 3.902 19 C -0.167 4.167 20 C -0.105 4.105 21 C -0.128 4.128 22 C -0.101 4.101 23 H 0.256 0.744 24 H -0.015 1.015 25 H -0.018 1.018 26 H 0.049 0.951 27 H 0.015 0.985 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.033 0.967 33 H 0.352 0.648 34 H 0.032 0.968 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.414 -14.240 3.001 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.193 4.193 3 Si 0.766 3.234 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.175 1.175 7 C -0.534 4.534 8 H 0.111 0.889 9 C 0.075 3.925 10 N -0.252 5.252 11 C -0.066 4.066 12 C -0.091 4.091 13 C -0.149 4.149 14 C -0.065 4.065 15 N -0.331 5.331 16 C -0.066 4.066 17 C -0.135 4.135 18 C -0.010 4.010 19 C -0.205 4.205 20 C -0.143 4.143 21 C -0.166 4.166 22 C -0.139 4.139 23 H 0.065 0.935 24 H 0.003 0.997 25 H 0.000 1.000 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.171 0.829 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.067 -13.855 2.274 16.714 hybrid contribution -0.349 1.104 1.033 1.552 sum 8.719 -12.751 3.307 15.797 Atomic orbital electron populations 1.70104 1.07638 1.26942 1.53681 1.25703 0.95286 1.02271 0.96090 0.85840 0.79497 0.80007 0.78044 1.20785 1.21915 1.17536 1.21945 0.95056 0.89812 1.46585 0.88875 1.19556 0.90590 0.89379 0.92989 1.62317 1.26920 1.01441 1.34529 1.22086 0.95627 0.90216 0.98700 1.21130 0.96454 0.93198 0.98282 1.21610 0.98096 0.93518 1.01716 1.21875 0.95991 0.98826 0.89832 1.60247 1.34123 1.04669 1.34097 1.21890 0.94463 0.89372 1.00849 1.21408 0.97995 0.97674 0.96447 1.22154 0.93722 0.97677 0.87481 1.23192 1.00228 0.99329 0.97752 1.22243 0.96837 0.98259 0.96977 1.22510 0.98706 0.98855 0.96500 1.22175 0.96254 0.95660 0.99816 0.93513 0.99663 1.00015 0.93237 0.96668 0.91521 0.92239 0.91207 0.89456 0.94915 0.82945 0.95026 0.90270 0.93364 0.91880 0.90573 0.90830 0.93413 0.90514 0.93429 0.91496 0.92487 0.91437 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.56 13.29 21.45 0.28 -56.27 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.94 43.73 28.62 68.60 1.96 45.70 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.25 -10.87 6.68 99.48 0.66 -10.21 16 7 C -0.50 -26.30 5.83 25.60 0.15 -26.15 16 8 H 0.09 4.72 3.29 -2.91 -0.01 4.71 16 9 C 0.20 10.38 4.20 85.56 0.36 10.74 16 10 N -0.53 -21.88 3.89 -871.29 -3.39 -25.27 16 11 C 0.06 2.24 4.32 86.30 0.37 2.61 16 12 C -0.07 -2.03 2.19 -10.71 -0.02 -2.06 16 13 C -0.11 -2.63 5.38 30.65 0.16 -2.47 16 14 C 0.06 1.23 6.55 86.33 0.57 1.79 16 15 N -0.70 -14.00 6.85 -513.99 -3.52 -17.52 16 16 C 0.06 1.40 6.55 86.33 0.57 1.97 16 17 C -0.10 -2.76 5.24 30.65 0.16 -2.60 16 18 C 0.10 3.61 2.71 45.64 0.12 3.73 16 19 C -0.17 -6.54 5.73 31.69 0.18 -6.36 16 20 C -0.11 -3.63 6.91 31.91 0.22 -3.41 16 21 C -0.13 -4.63 6.18 31.67 0.20 -4.43 16 22 C -0.10 -3.60 5.64 31.32 0.18 -3.42 16 23 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 24 H -0.01 -0.85 8.05 -2.39 -0.02 -0.87 16 25 H -0.02 -0.98 5.78 -2.39 -0.01 -1.00 16 26 H 0.05 1.92 8.01 -2.39 -0.02 1.90 16 27 H 0.02 0.56 8.12 -2.39 -0.02 0.54 16 28 H 0.07 1.87 6.15 -2.39 -0.01 1.86 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.35 5.33 8.90 -89.69 -0.80 4.53 16 34 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 2.02 7.84 -2.39 -0.02 2.00 16 38 H 0.08 2.49 5.82 -2.39 -0.01 2.47 16 39 H 0.07 3.61 4.11 -2.39 -0.01 3.60 16 40 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.06 2.44 4.57 -2.39 -0.01 2.43 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.06 2.57 5.86 -2.39 -0.01 2.56 16 Total: -1.00 -60.49 328.93 -0.88 -61.37 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.11 Total: 21.42 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 3.67 Total: -29.42 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -6.63 Total: -99.07 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.96 Total: 45.70 kcal Total: -60.49 -0.88 -61.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207437802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.390 kcal (2) G-P(sol) polarization free energy of solvation -60.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds