Wall clock time and date at job start Mon Mar 30 2020 01:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47250 * 2 1 4 4 C 1.31007 * 120.00003 * 126.72942 * 3 2 1 5 5 C 1.50706 * 119.99634 * 7.87753 * 4 3 2 6 6 C 1.53002 * 109.46755 * 126.78235 * 5 4 3 7 7 C 1.53007 * 109.46853 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47153 * 179.97438 * 7 6 5 9 9 C 1.46960 * 110.99682 * 293.80005 * 8 7 6 10 10 C 1.53055 * 109.36218 * 176.81308 * 9 8 7 11 11 N 1.46958 * 109.36900 * 58.39651 * 10 9 8 12 12 C 1.46896 * 111.00367 * 176.81296 * 11 10 9 13 13 C 1.50707 * 109.46901 * 293.80262 * 12 11 10 14 14 H 1.07991 * 119.99951 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99681 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99922 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99892 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47184 * 59.99737 * 17 15 13 19 19 H 1.48495 * 109.47110 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46962 * 299.99740 * 17 15 13 21 21 C 1.46956 * 110.87994 * 300.68275 * 11 10 9 22 22 C 1.46948 * 111.00281 * 169.99807 * 8 7 6 23 23 H 1.09006 * 109.46814 * 59.99787 * 1 2 3 24 24 H 1.08998 * 109.47006 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46929 * 299.99879 * 1 2 3 26 26 H 1.09006 * 109.47145 * 240.00083 * 2 1 3 27 27 H 1.08996 * 109.47059 * 120.00719 * 2 1 3 28 28 H 1.07992 * 120.00361 * 306.72939 * 3 2 1 29 29 H 1.07998 * 120.00208 * 187.60178 * 4 3 2 30 30 H 1.08997 * 109.47106 * 246.77643 * 5 4 3 31 31 H 1.08996 * 109.47230 * 6.78178 * 5 4 3 32 32 H 1.09006 * 109.47048 * 299.99383 * 6 5 4 33 33 H 1.08996 * 109.47297 * 59.99984 * 6 5 4 34 34 H 1.08993 * 109.46878 * 300.00143 * 7 6 5 35 35 H 1.08998 * 109.46728 * 59.99876 * 7 6 5 36 36 H 1.09000 * 109.49023 * 296.77234 * 9 8 7 37 37 H 1.08997 * 109.49659 * 56.84585 * 9 8 7 38 38 H 1.09007 * 109.48718 * 298.42979 * 10 9 8 39 39 H 1.08998 * 109.49098 * 178.36856 * 10 9 8 40 40 H 1.08998 * 109.46898 * 53.80102 * 12 11 10 41 41 H 1.08995 * 109.47226 * 173.79919 * 12 11 10 42 42 H 0.97005 * 119.99469 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.49053 * 299.35371 * 21 11 10 44 44 H 1.08996 * 109.50580 * 179.29235 * 21 11 10 45 45 H 1.08998 * 109.48901 * 303.15894 * 22 8 7 46 46 H 1.09007 * 109.48868 * 63.21988 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.8904 1.8121 0.9093 5 6 3.5103 0.8049 1.8434 6 6 5.0340 0.9346 1.7948 7 6 5.6634 -0.0884 2.7426 8 7 7.1264 0.0357 2.6955 9 6 7.6453 -0.3497 1.3757 10 6 9.1598 -0.1313 1.3424 11 7 9.7904 -0.9260 2.4057 12 6 11.2533 -0.8019 2.3586 13 6 11.7702 -1.4313 1.0905 14 1 11.0810 -1.8790 0.3900 15 6 13.1233 -1.4364 0.8254 16 7 13.9626 -0.8915 1.6787 17 14 13.7640 -2.2158 -0.7467 18 1 13.1711 -1.5242 -1.9195 19 1 15.2429 -2.0905 -0.7942 20 1 13.3872 -3.6519 -0.7763 21 6 9.2714 -0.5406 3.7254 22 6 7.7568 -0.7590 3.7587 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6851 2.1163 -0.7495 29 1 3.1569 2.8558 0.9866 30 1 3.1622 0.9896 2.8597 31 1 3.2213 -0.2005 1.5373 32 1 5.3821 0.7499 0.7784 33 1 5.3231 1.9400 2.1008 34 1 5.3153 0.0958 3.7589 35 1 5.3743 -1.0936 2.4361 36 1 7.4255 -1.4012 1.1914 37 1 7.1729 0.2612 0.6065 38 1 9.3785 0.9250 1.4996 39 1 9.5511 -0.4437 0.3742 40 1 11.5294 0.2523 2.3797 41 1 11.6889 -1.3088 3.2196 42 1 14.9145 -0.8948 1.4919 43 1 9.4912 0.5110 3.9097 44 1 9.7438 -1.1512 4.4948 45 1 7.3656 -0.4466 4.7269 46 1 7.5382 -1.8153 3.6015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208136033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:14 Heat of formation + Delta-G solvation = 9.821573 kcal Electronic energy + Delta-G solvation = -20117.579094 eV Core-core repulsion = 17234.853066 eV Total energy + Delta-G solvation = -2882.726028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.85984 -37.25094 -35.37320 -33.19452 -32.25222 -30.49680 -30.13108 -27.91056 -25.80401 -24.01692 -23.36793 -23.16629 -21.50454 -20.87192 -19.14270 -18.50463 -16.31197 -16.18095 -15.77861 -15.08795 -14.66301 -14.55546 -14.38300 -14.17298 -14.05113 -13.78735 -13.32428 -13.10112 -12.69848 -12.43319 -12.20390 -12.01113 -11.78777 -11.74687 -11.31622 -11.22767 -11.15121 -10.93797 -10.82283 -10.67175 -10.53991 -10.42191 -10.25785 -10.19605 -9.65368 -9.16764 -9.11866 -8.41382 -8.07177 -7.18837 -6.00389 -4.01809 2.02076 3.34755 3.38599 3.41576 4.10810 4.44167 4.51724 4.79021 4.85138 4.94686 5.02252 5.03420 5.14697 5.29963 5.34988 5.36291 5.40215 5.44618 5.54470 5.60855 5.63717 5.68922 5.77405 5.82152 5.83699 5.90945 5.92645 5.94633 6.08593 6.13235 6.24218 6.29849 6.48232 6.48705 6.64735 6.67458 6.73367 7.24134 7.32476 7.39340 7.43103 7.82485 8.12372 8.24686 8.58649 9.05487 9.62182 11.10461 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.027159 B = 0.003065 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.733676 B = 9133.099202 C = 9811.446469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.166 4.166 4 C -0.152 4.152 5 C -0.100 4.100 6 C -0.110 4.110 7 C 0.056 3.944 8 N -0.541 5.541 9 C 0.056 3.944 10 C 0.067 3.933 11 N -0.539 5.539 12 C 0.194 3.806 13 C -0.507 4.507 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.056 3.944 22 C 0.062 3.938 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.037 0.963 37 H 0.071 0.929 38 H 0.028 0.972 39 H 0.085 0.915 40 H -0.009 1.009 41 H 0.029 0.971 42 H 0.261 0.739 43 H 0.030 0.970 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.280 3.352 0.243 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.184 4.184 4 C -0.170 4.170 5 C -0.137 4.137 6 C -0.148 4.148 7 C -0.072 4.072 8 N -0.265 5.265 9 C -0.072 4.072 10 C -0.061 4.061 11 N -0.265 5.265 12 C 0.069 3.931 13 C -0.546 4.546 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.073 4.073 22 C -0.067 4.067 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.103 0.897 40 H 0.009 0.991 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -23.062 3.376 0.280 23.310 hybrid contribution 0.512 -0.269 -0.828 1.010 sum -22.551 3.107 -0.548 22.770 Atomic orbital electron populations 1.21694 0.95301 1.01528 1.01801 1.20819 0.95924 0.94890 1.02815 1.22778 0.99243 0.97496 0.98889 1.22828 0.97625 0.99374 0.97217 1.20851 0.95338 0.98567 0.98978 1.21520 0.93132 1.00159 0.99952 1.22080 0.88092 0.97296 0.99722 1.62163 1.04152 1.55778 1.04455 1.22285 0.96274 0.98566 0.90036 1.21990 0.91341 0.95447 0.97352 1.62276 1.09259 1.53929 1.01001 1.19694 0.80115 0.95363 0.97963 1.21121 0.91765 1.36808 1.04904 0.92007 1.24995 0.96911 0.95695 0.97045 1.69955 1.02843 1.45090 1.35946 0.86560 0.77514 0.79866 0.83460 1.20273 1.21364 1.20202 1.22061 0.93047 0.98641 0.93519 1.22142 0.95124 0.95445 0.93945 0.92823 0.92661 0.92738 0.91395 0.90521 0.87568 0.87383 0.91334 0.90761 0.91727 0.91145 0.91254 0.95225 0.94516 0.91025 0.95384 0.89668 0.99089 0.95259 0.92891 0.95184 0.91089 0.91316 0.94446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.11 -0.82 6.03 -27.89 -0.17 -0.99 16 3 C -0.17 -1.39 9.51 -36.03 -0.34 -1.73 16 4 C -0.15 -1.34 9.51 -36.02 -0.34 -1.68 16 5 C -0.10 -0.89 5.31 -27.88 -0.15 -1.03 16 6 C -0.11 -1.17 5.13 -26.73 -0.14 -1.31 16 7 C 0.06 0.67 4.96 -3.82 -0.02 0.66 16 8 N -0.54 -8.24 4.71 -234.47 -1.10 -9.34 16 9 C 0.06 0.93 5.41 -3.76 -0.02 0.91 16 10 C 0.07 1.37 5.43 -3.76 -0.02 1.35 16 11 N -0.54 -12.08 4.70 -235.91 -1.11 -13.19 16 12 C 0.19 5.18 4.72 -4.97 -0.02 5.15 16 13 C -0.51 -14.45 8.47 -34.44 -0.29 -14.74 16 14 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 17 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 22 C 0.06 0.96 5.61 -3.77 -0.02 0.94 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.59 5.29 -51.93 -0.27 0.32 16 28 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.11 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.64 5.29 -51.93 -0.27 0.37 16 32 H 0.06 0.74 6.49 -51.93 -0.34 0.41 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.76 8.03 -51.93 -0.42 0.34 16 35 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.05 6.34 -51.93 -0.33 0.72 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 1.84 6.79 -51.93 -0.35 1.48 16 40 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 41 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 45 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -29.95 356.22 -11.08 -41.03 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -8.67 Total: -3.83 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.29 Total: -10.56 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: -1.48 Total: -48.82 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.95 -11.08 -41.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208136033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.856 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds