Wall clock time and date at job start Mon Mar 30 2020 00:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00233 * 2 1 4 4 H 1.48500 * 109.47103 * 270.00015 * 3 2 1 5 5 H 1.48501 * 109.47397 * 30.00029 * 3 2 1 6 6 H 1.48497 * 109.46849 * 150.00050 * 3 2 1 7 7 C 1.37881 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00068 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47291 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47085 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46790 * 180.02562 * 12 11 10 14 14 O 1.42897 * 109.47062 * 180.02562 * 13 12 11 15 15 C 1.42902 * 114.00380 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.26188 * 29.99486 * 15 14 13 17 17 C 1.51385 * 109.26461 * 270.49862 * 15 14 13 18 18 C 1.49512 * 117.52101 * 165.95851 * 17 15 14 19 19 C 1.50510 * 113.04439 * 79.71536 * 18 17 15 20 20 C 1.31663 * 116.92842 * 275.43443 * 19 18 17 21 21 C 1.50808 * 118.08340 * 0.27303 * 20 19 18 22 22 C 1.52716 * 108.95514 * 104.85786 * 21 20 19 23 23 C 1.53848 * 109.23846 * 149.47882 * 15 14 13 24 24 H 0.97003 * 119.99612 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47413 * 59.99537 * 9 7 2 26 26 H 1.09005 * 109.46819 * 299.99635 * 9 7 2 27 27 H 1.09002 * 109.47377 * 59.99535 * 10 9 7 28 28 H 1.09005 * 109.47031 * 299.99526 * 10 9 7 29 29 H 1.09002 * 109.46980 * 59.99671 * 11 10 9 30 30 H 1.09005 * 109.47006 * 299.99921 * 11 10 9 31 31 H 1.09002 * 109.47210 * 60.00143 * 12 11 10 32 32 H 1.08995 * 109.47530 * 299.99975 * 12 11 10 33 33 H 1.08989 * 109.47578 * 59.99879 * 13 12 11 34 34 H 1.09002 * 109.47284 * 299.99361 * 13 12 11 35 35 H 1.08999 * 107.83649 * 287.99258 * 17 15 14 36 36 H 1.09001 * 107.83734 * 43.96343 * 17 15 14 37 37 H 1.08998 * 108.76999 * 200.64063 * 18 17 15 38 38 H 1.09002 * 108.76538 * 318.80109 * 18 17 15 39 39 H 1.07996 * 121.53590 * 95.41178 * 19 18 17 40 40 H 1.08005 * 120.95841 * 180.29139 * 20 19 18 41 41 H 1.08994 * 109.55896 * 224.70014 * 21 20 19 42 42 H 1.08998 * 109.55601 * 345.01738 * 21 20 19 43 43 H 1.09001 * 109.61924 * 61.90748 * 22 21 20 44 44 H 1.08999 * 109.62109 * 182.27443 * 22 21 20 45 45 H 1.09001 * 109.80331 * 345.68820 * 23 15 14 46 46 H 1.09001 * 109.80622 * 106.56700 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 6 2.4742 -6.1501 0.0005 13 6 1.7090 -7.4751 0.0005 14 8 2.6375 -8.5613 0.0005 15 6 2.0230 -9.8514 0.0011 16 1 1.0636 -9.7929 -0.5130 17 6 1.7974 -10.2965 1.4304 18 6 0.8850 -11.4593 1.6560 19 6 1.5484 -12.7865 1.4034 20 6 1.5711 -13.2144 0.1584 21 6 0.9427 -12.3460 -0.9023 22 6 2.0490 -11.6679 -1.7078 23 6 2.9343 -10.8474 -0.7366 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5566 0.8904 27 1 2.8718 -3.6045 0.8905 28 1 2.8717 -3.6045 -0.8895 29 1 0.8530 -5.0451 -0.8886 30 1 0.8536 -5.0446 0.8914 31 1 3.1015 -6.0923 0.8901 32 1 3.1002 -6.0925 -0.8898 33 1 1.0820 -7.5326 -0.8891 34 1 1.0828 -7.5330 0.8908 35 1 2.7679 -10.5455 1.8596 36 1 1.3988 -9.4474 1.9856 37 1 0.5328 -11.4338 2.6872 38 1 0.0258 -11.3648 0.9920 39 1 1.9861 -13.3611 2.2063 40 1 2.0264 -14.1603 -0.0957 41 1 0.3342 -12.9616 -1.5646 42 1 0.3181 -11.5877 -0.4302 43 1 2.6556 -12.4245 -2.2055 44 1 1.6065 -11.0058 -2.4521 45 1 3.6949 -10.3055 -1.2988 46 1 3.4105 -11.5145 -0.0180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224370247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:44 Heat of formation + Delta-G solvation = -70.609224 kcal Electronic energy + Delta-G solvation = -19880.468600 eV Core-core repulsion = 16961.962080 eV Total energy + Delta-G solvation = -2918.506520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.79547 -37.42471 -35.24526 -33.41095 -32.99533 -32.09475 -30.12891 -27.22790 -26.29896 -25.40109 -23.34681 -22.03494 -21.25076 -20.63746 -19.99779 -18.33833 -17.17769 -16.17887 -16.05333 -15.60103 -15.31840 -14.86306 -14.52895 -14.39540 -14.06445 -13.69943 -13.13544 -13.02482 -12.60109 -12.38170 -12.10087 -12.05802 -11.68911 -11.54470 -11.29785 -11.26184 -11.17703 -11.01524 -10.88570 -10.78163 -10.44468 -10.38877 -10.33887 -10.21576 -9.60366 -9.49934 -9.23607 -9.20573 -8.97543 -8.30717 -5.96049 -3.97954 1.91420 3.34404 3.40271 3.44171 3.59207 4.33295 4.49043 4.49800 4.67544 4.73079 4.80473 4.92016 5.04176 5.13001 5.17607 5.19562 5.30293 5.35999 5.39533 5.48488 5.53555 5.56819 5.58584 5.62965 5.76507 5.82742 5.86779 5.88851 5.94504 6.01524 6.09700 6.16496 6.33015 6.36998 6.45805 6.55957 6.57589 6.85731 6.99343 7.21588 7.29523 7.73183 7.88972 8.05201 8.48558 9.09603 9.65778 11.15383 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.050708 B = 0.002375 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.052011 B =11785.610592 C =11901.925923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.116 4.116 12 C -0.116 4.116 13 C 0.061 3.939 14 O -0.383 6.383 15 C 0.093 3.907 16 H 0.058 0.942 17 C -0.139 4.139 18 C -0.092 4.092 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.118 4.118 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.015 0.985 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 -27.728 0.027 27.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.015 4.015 14 O -0.303 6.303 15 C 0.036 3.964 16 H 0.076 0.924 17 C -0.177 4.177 18 C -0.129 4.129 19 C -0.179 4.179 20 C -0.173 4.173 21 C -0.150 4.150 22 C -0.150 4.150 23 C -0.156 4.156 24 H 0.069 0.931 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.035 -27.562 0.040 27.637 hybrid contribution 0.145 0.852 0.123 0.873 sum 2.180 -26.710 0.163 26.800 Atomic orbital electron populations 1.69974 1.06053 1.26493 1.51153 1.25044 0.94862 0.99259 0.95454 0.86599 0.79856 0.83505 0.78073 1.20689 1.21255 1.19890 1.21301 0.93058 0.91203 1.50173 0.92727 1.19113 0.94081 0.91473 0.97087 1.21612 0.99036 0.93766 1.00287 1.21589 0.97744 0.94486 1.01524 1.21591 0.99007 0.91869 1.02906 1.22671 0.92143 0.86928 0.99771 1.87953 1.33960 1.13398 1.94978 1.21930 0.96180 0.83721 0.94607 0.92366 1.21002 1.01043 0.97815 0.97845 1.19986 0.98492 0.92267 1.02172 1.23018 1.00744 0.97077 0.97021 1.23047 1.00277 0.99258 0.94675 1.21092 0.98038 0.98806 0.97044 1.21827 0.96949 0.98942 0.97311 1.22313 0.97995 0.96684 0.98576 0.93078 0.96717 0.96703 0.93433 0.93420 0.92466 0.92477 0.91525 0.91499 0.93528 0.93608 0.91629 0.91794 0.91460 0.90823 0.86892 0.87263 0.91529 0.89975 0.91570 0.91510 0.90589 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 11 C -0.12 -2.00 5.21 -26.73 -0.14 -2.14 16 12 C -0.12 -1.72 5.58 -26.73 -0.15 -1.87 16 13 C 0.06 0.80 5.68 37.16 0.21 1.01 16 14 O -0.38 -5.06 9.85 -35.23 -0.35 -5.40 16 15 C 0.09 0.96 2.16 -27.11 -0.06 0.90 16 16 H 0.06 0.57 6.20 -51.93 -0.32 0.25 16 17 C -0.14 -1.31 4.54 -29.27 -0.13 -1.44 16 18 C -0.09 -0.72 5.13 -29.70 -0.15 -0.87 16 19 C -0.16 -1.17 9.28 -36.27 -0.34 -1.51 16 20 C -0.15 -1.09 8.55 -36.13 -0.31 -1.40 16 21 C -0.11 -0.80 5.42 -27.98 -0.15 -0.95 16 22 C -0.11 -0.84 5.60 -25.86 -0.14 -0.99 16 23 C -0.12 -1.08 5.47 -25.27 -0.14 -1.22 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.57 8.08 -51.94 -0.42 0.15 16 34 H 0.05 0.57 7.55 -51.93 -0.39 0.17 16 35 H 0.06 0.65 7.71 -51.93 -0.40 0.25 16 36 H 0.06 0.64 7.43 -51.93 -0.39 0.26 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.56 5.63 -51.93 -0.29 0.26 16 39 H 0.11 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.11 0.67 8.06 -52.48 -0.42 0.24 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.61 3.56 -51.93 -0.18 0.43 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.76 7.96 -51.93 -0.41 0.35 16 46 H 0.07 0.66 6.28 -51.93 -0.33 0.34 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -30.64 351.58 -10.12 -40.76 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -8.60 Total: -4.47 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -2.19 Total: -26.46 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.74 Total: -26.76 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.35 Total: -5.40 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.64 -10.12 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.849 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds