Wall clock time and date at job start Mon Mar 30 2020 00:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00233 * 2 1 4 4 H 1.48500 * 109.47103 * 270.00015 * 3 2 1 5 5 H 1.48501 * 109.47397 * 30.00029 * 3 2 1 6 6 H 1.48497 * 109.46849 * 150.00050 * 3 2 1 7 7 C 1.37881 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00068 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47291 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47085 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46790 * 180.02562 * 12 11 10 14 14 O 1.42897 * 109.47062 * 180.02562 * 13 12 11 15 15 C 1.42902 * 114.00380 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.26188 * 29.99486 * 15 14 13 17 17 C 1.51385 * 109.26461 * 270.49862 * 15 14 13 18 18 C 1.49512 * 117.52101 * 165.95851 * 17 15 14 19 19 C 1.50510 * 113.04439 * 79.71536 * 18 17 15 20 20 C 1.31663 * 116.92842 * 275.43443 * 19 18 17 21 21 C 1.50808 * 118.08340 * 0.27303 * 20 19 18 22 22 C 1.52716 * 108.95514 * 104.85786 * 21 20 19 23 23 C 1.53848 * 109.23846 * 149.47882 * 15 14 13 24 24 H 0.97003 * 119.99612 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47413 * 59.99537 * 9 7 2 26 26 H 1.09005 * 109.46819 * 299.99635 * 9 7 2 27 27 H 1.09002 * 109.47377 * 59.99535 * 10 9 7 28 28 H 1.09005 * 109.47031 * 299.99526 * 10 9 7 29 29 H 1.09002 * 109.46980 * 59.99671 * 11 10 9 30 30 H 1.09005 * 109.47006 * 299.99921 * 11 10 9 31 31 H 1.09002 * 109.47210 * 60.00143 * 12 11 10 32 32 H 1.08995 * 109.47530 * 299.99975 * 12 11 10 33 33 H 1.08989 * 109.47578 * 59.99879 * 13 12 11 34 34 H 1.09002 * 109.47284 * 299.99361 * 13 12 11 35 35 H 1.08999 * 107.83649 * 287.99258 * 17 15 14 36 36 H 1.09001 * 107.83734 * 43.96343 * 17 15 14 37 37 H 1.08998 * 108.76999 * 200.64063 * 18 17 15 38 38 H 1.09002 * 108.76538 * 318.80109 * 18 17 15 39 39 H 1.07996 * 121.53590 * 95.41178 * 19 18 17 40 40 H 1.08005 * 120.95841 * 180.29139 * 20 19 18 41 41 H 1.08994 * 109.55896 * 224.70014 * 21 20 19 42 42 H 1.08998 * 109.55601 * 345.01738 * 21 20 19 43 43 H 1.09001 * 109.61924 * 61.90748 * 22 21 20 44 44 H 1.08999 * 109.62109 * 182.27443 * 22 21 20 45 45 H 1.09001 * 109.80331 * 345.68820 * 23 15 14 46 46 H 1.09001 * 109.80622 * 106.56700 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 6 2.4742 -6.1501 0.0005 13 6 1.7090 -7.4751 0.0005 14 8 2.6375 -8.5613 0.0005 15 6 2.0230 -9.8514 0.0011 16 1 1.0636 -9.7929 -0.5130 17 6 1.7974 -10.2965 1.4304 18 6 0.8850 -11.4593 1.6560 19 6 1.5484 -12.7865 1.4034 20 6 1.5711 -13.2144 0.1584 21 6 0.9427 -12.3460 -0.9023 22 6 2.0490 -11.6679 -1.7078 23 6 2.9343 -10.8474 -0.7366 24 1 -0.4850 0.8401 0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6239 -2.5566 0.8904 27 1 2.8718 -3.6045 0.8905 28 1 2.8717 -3.6045 -0.8895 29 1 0.8530 -5.0451 -0.8886 30 1 0.8536 -5.0446 0.8914 31 1 3.1015 -6.0923 0.8901 32 1 3.1002 -6.0925 -0.8898 33 1 1.0820 -7.5326 -0.8891 34 1 1.0828 -7.5330 0.8908 35 1 2.7679 -10.5455 1.8596 36 1 1.3988 -9.4474 1.9856 37 1 0.5328 -11.4338 2.6872 38 1 0.0258 -11.3648 0.9920 39 1 1.9861 -13.3611 2.2063 40 1 2.0264 -14.1603 -0.0957 41 1 0.3342 -12.9616 -1.5646 42 1 0.3181 -11.5877 -0.4302 43 1 2.6556 -12.4245 -2.2055 44 1 1.6065 -11.0058 -2.4521 45 1 3.6949 -10.3055 -1.2988 46 1 3.4105 -11.5145 -0.0180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224370247.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:43 Heat of formation + Delta-G solvation = -85.202566 kcal Electronic energy + Delta-G solvation = -19881.101415 eV Core-core repulsion = 16961.962080 eV Total energy + Delta-G solvation = -2919.139335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.54371 -38.31969 -36.80895 -34.87662 -34.01629 -33.13056 -31.71733 -28.37008 -27.50134 -26.18643 -25.02279 -22.73421 -22.47779 -21.82687 -21.42669 -18.92978 -18.46004 -17.95494 -17.07799 -16.53508 -16.42120 -15.97257 -15.87907 -15.54385 -14.80078 -14.68600 -14.49020 -14.12534 -13.94857 -13.54687 -13.48672 -13.21010 -12.93114 -12.80452 -12.61880 -12.39288 -12.33239 -12.13565 -11.96805 -11.92843 -11.76465 -11.70014 -11.48518 -11.34031 -11.30853 -10.99523 -10.84672 -10.55463 -10.40313 -9.78618 -8.20344 -6.31548 1.37129 1.39350 1.41067 1.52335 2.40700 2.66738 3.12290 3.65767 3.80389 4.00386 4.02074 4.08582 4.16572 4.20897 4.26271 4.30938 4.37769 4.41131 4.47469 4.53569 4.60375 4.73995 4.74939 4.84184 4.88904 4.93087 4.99577 5.01234 5.03597 5.11344 5.15278 5.25051 5.28708 5.30246 5.32075 5.33803 5.39713 5.44637 5.55432 5.78225 5.82500 5.86936 6.03917 6.26173 6.36639 6.85789 7.37594 8.91530 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.050708 B = 0.002375 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.052011 B =11785.610592 C =11901.925923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.021 3.979 10 C -0.099 4.099 11 C -0.107 4.107 12 C -0.108 4.108 13 C 0.065 3.935 14 O -0.401 6.401 15 C 0.089 3.911 16 H 0.064 0.936 17 C -0.133 4.133 18 C -0.091 4.091 19 C -0.170 4.170 20 C -0.154 4.154 21 C -0.114 4.114 22 C -0.109 4.109 23 C -0.116 4.116 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 -28.585 -0.169 28.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.144 4.144 12 C -0.145 4.145 13 C -0.011 4.011 14 O -0.321 6.321 15 C 0.032 3.968 16 H 0.082 0.918 17 C -0.171 4.171 18 C -0.128 4.128 19 C -0.188 4.188 20 C -0.172 4.172 21 C -0.151 4.151 22 C -0.146 4.146 23 C -0.153 4.153 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.009 0.991 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.735 -28.439 -0.157 28.571 hybrid contribution -0.091 1.090 0.180 1.108 sum 2.644 -27.349 0.023 27.477 Atomic orbital electron populations 1.70103 1.07800 1.27772 1.51774 1.26025 0.95838 1.03471 0.94749 0.85427 0.78633 0.78318 0.78556 1.19669 1.20603 1.18801 1.21751 0.93551 0.92598 1.50432 0.92322 1.19047 0.94540 0.93249 0.94740 1.21447 0.98020 0.93796 1.00443 1.21437 0.97871 0.93397 1.01726 1.21426 0.98335 0.91931 1.02824 1.22546 0.91849 0.86177 1.00512 1.87918 1.34647 1.14385 1.95152 1.22121 0.96593 0.82719 0.95388 0.91787 1.20955 1.00957 0.98171 0.97039 1.19957 0.98233 0.91954 1.02607 1.23103 1.01149 0.96953 0.97549 1.23193 0.99886 0.99612 0.94522 1.21099 0.97912 0.98847 0.97193 1.21803 0.96914 0.98953 0.96936 1.22295 0.97857 0.96455 0.98710 0.92752 0.99043 0.99065 0.93260 0.93168 0.92260 0.92357 0.91681 0.91521 0.92710 0.92976 0.92401 0.92690 0.90946 0.90504 0.86085 0.86164 0.90477 0.90442 0.90553 0.91505 0.91672 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.99 13.29 21.45 0.28 -57.70 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.55 -32.04 9.11 25.60 0.23 -31.81 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.16 4.97 29.85 0.15 1.31 16 10 C -0.10 -4.22 5.15 30.59 0.16 -4.06 16 11 C -0.11 -3.63 5.21 30.59 0.16 -3.47 16 12 C -0.11 -3.08 5.58 30.59 0.17 -2.91 16 13 C 0.07 1.63 5.68 71.98 0.41 2.04 16 14 O -0.40 -10.22 9.85 -148.98 -1.47 -11.69 16 15 C 0.09 1.75 2.16 30.35 0.07 1.81 16 16 H 0.06 1.18 6.20 -2.39 -0.01 1.16 16 17 C -0.13 -2.40 4.54 28.95 0.13 -2.27 16 18 C -0.09 -1.29 5.13 28.67 0.15 -1.15 16 19 C -0.17 -2.21 9.28 24.97 0.23 -1.98 16 20 C -0.15 -1.88 8.55 25.06 0.21 -1.66 16 21 C -0.11 -1.39 5.42 29.79 0.16 -1.23 16 22 C -0.11 -1.44 5.60 31.16 0.17 -1.26 16 23 C -0.12 -1.99 5.47 31.54 0.17 -1.82 16 24 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.27 8.08 -2.39 -0.02 1.25 16 34 H 0.05 1.23 7.55 -2.39 -0.02 1.21 16 35 H 0.06 1.11 7.71 -2.39 -0.02 1.09 16 36 H 0.05 1.07 7.43 -2.39 -0.02 1.05 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.05 5.63 -2.39 -0.01 1.04 16 39 H 0.12 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 1.02 3.56 -2.39 -0.01 1.02 16 43 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 1.26 7.96 -2.39 -0.02 1.24 16 46 H 0.07 1.26 6.28 -2.39 -0.01 1.24 16 Total: -1.00 -65.08 351.58 4.79 -60.30 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.90 Total: 10.14 kcal Atomic # 6 Polarization: -51.23 SS G_CDS: 3.04 Total: -48.19 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.28 Total: -57.70 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.47 Total: -11.69 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.08 4.79 -60.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370247.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.904 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds