Wall clock time and date at job start Mon Mar 30 2020 00:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 115.52639 * 2 1 4 4 C 1.52995 * 117.45885 * 145.49988 * 2 1 3 5 5 H 1.09000 * 119.29933 * 355.35283 * 4 2 1 6 6 C 1.54271 * 118.19870 * 201.21154 * 4 2 1 7 7 C 1.54889 * 104.19767 * 272.21202 * 6 4 2 8 8 H 1.09000 * 110.75721 * 156.43805 * 7 6 4 9 9 O 1.42901 * 110.75372 * 279.62562 * 7 6 4 10 10 C 1.42899 * 113.99916 * 209.99630 * 9 7 6 11 11 C 1.52997 * 109.47048 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47201 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47575 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47571 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47006 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00384 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99695 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99967 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99914 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46698 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47003 * 299.99988 * 19 17 15 22 22 H 1.48495 * 109.47181 * 60.00216 * 19 17 15 23 23 C 1.54892 * 102.74780 * 37.93943 * 7 6 4 24 24 C 1.53009 * 117.45768 * 214.53930 * 2 1 3 25 25 H 1.08993 * 119.29667 * 3.70963 * 24 2 1 26 26 H 1.08997 * 109.47130 * 274.50051 * 1 2 3 27 27 H 1.08999 * 109.47029 * 34.50139 * 1 2 3 28 28 H 1.09004 * 109.47142 * 154.50289 * 1 2 3 29 29 H 1.09007 * 109.46698 * 198.71175 * 3 2 1 30 30 H 1.09002 * 109.47288 * 318.70993 * 3 2 1 31 31 H 1.08996 * 109.46907 * 78.71415 * 3 2 1 32 32 H 1.09001 * 110.48764 * 153.53267 * 6 4 2 33 33 H 1.09004 * 110.48365 * 30.88883 * 6 4 2 34 34 H 1.09004 * 109.46708 * 60.00391 * 10 9 7 35 35 H 1.08997 * 109.47382 * 300.00508 * 10 9 7 36 36 H 1.08996 * 109.47284 * 60.00252 * 11 10 9 37 37 H 1.09005 * 109.47186 * 300.00141 * 11 10 9 38 38 H 1.09009 * 109.47197 * 59.99987 * 12 11 10 39 39 H 1.08997 * 109.47174 * 300.00357 * 12 11 10 40 40 H 1.09001 * 109.47004 * 59.99502 * 13 12 11 41 41 H 1.09005 * 109.47005 * 300.00098 * 13 12 11 42 42 H 1.08996 * 109.47253 * 59.99682 * 14 13 12 43 43 H 1.09001 * 109.46273 * 299.99712 * 14 13 12 44 44 H 0.96997 * 119.99911 * 0.02562 * 18 17 15 45 45 H 1.09000 * 110.48507 * 80.73453 * 23 7 6 46 46 H 1.09000 * 110.48480 * 203.38138 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1893 1.3806 0.0000 4 6 2.2355 -1.1188 0.7689 5 1 1.6407 -1.8253 1.3480 6 6 3.6963 -0.8916 1.2097 7 6 4.5369 -1.3690 -0.0005 8 1 5.5195 -0.8971 0.0014 9 8 4.6608 -2.7926 -0.0010 10 6 5.8734 -3.2702 -0.5870 11 6 5.8979 -4.7991 -0.5338 12 6 7.1965 -5.3105 -1.1607 13 6 7.2213 -6.8393 -1.1070 14 6 8.5202 -7.3507 -1.7334 15 6 8.5443 -8.8566 -1.6810 16 1 7.7163 -9.3951 -1.2442 17 6 9.6236 -9.5470 -2.1906 18 7 10.6317 -8.8913 -2.7229 19 14 9.6538 -11.4136 -2.1251 20 1 10.9144 -11.9098 -2.7331 21 1 9.5773 -11.8605 -0.7110 22 1 8.4939 -11.9542 -2.8785 23 6 3.6963 -0.8908 -1.2104 24 6 2.2355 -1.1184 -0.7698 25 1 1.6398 -1.8337 -1.3368 26 1 -0.3633 0.0806 1.0245 27 1 -0.3633 0.8469 -0.5821 28 1 -0.3634 -0.9276 -0.4424 29 1 3.2243 1.2890 -0.3297 30 1 1.6491 2.0413 -0.6781 31 1 2.1644 1.7951 1.0078 32 1 3.9257 -1.4883 2.0926 33 1 3.8757 0.1656 1.4055 34 1 6.7250 -2.8734 -0.0342 35 1 5.9292 -2.9422 -1.6249 36 1 5.0464 -5.1956 -1.0868 37 1 5.8419 -5.1275 0.5041 38 1 8.0479 -4.9140 -0.6074 39 1 7.2529 -4.9821 -2.1985 40 1 6.3700 -7.2362 -1.6600 41 1 7.1652 -7.1674 -0.0690 42 1 9.3713 -6.9539 -1.1800 43 1 8.5767 -7.0227 -2.7713 44 1 10.6161 -7.9220 -2.7566 45 1 3.8756 0.1665 -1.4055 46 1 3.9256 -1.4869 -2.0937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224370359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:11 Heat of formation + Delta-G solvation = -64.366509 kcal Electronic energy + Delta-G solvation = -19754.287822 eV Core-core repulsion = 16836.052007 eV Total energy + Delta-G solvation = -2918.235815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.57189 -37.70215 -35.40643 -33.30588 -32.37320 -30.05245 -28.59569 -28.45373 -27.45145 -25.96788 -23.23348 -21.52060 -21.05715 -20.24876 -20.04169 -18.76662 -16.72196 -16.56591 -16.17901 -15.84559 -14.95281 -14.61453 -14.37144 -14.22654 -13.69388 -13.21361 -13.12109 -12.76852 -12.60737 -12.55443 -12.39242 -12.14583 -12.05386 -11.70799 -11.58735 -11.45941 -11.36063 -11.02772 -10.82597 -10.68717 -10.49001 -10.44498 -10.08906 -9.84693 -9.74723 -9.74290 -9.57233 -9.49780 -8.46610 -8.27891 -6.31631 -3.99820 3.28769 3.46440 3.48858 3.54892 3.67476 4.18286 4.36522 4.43272 4.58741 4.73223 4.84696 4.93830 5.03922 5.10893 5.16326 5.21247 5.27785 5.31841 5.40664 5.45568 5.46670 5.49069 5.53071 5.57809 5.59080 5.63870 5.68032 5.74773 5.80377 5.90267 5.95239 6.02668 6.03631 6.13213 6.23747 6.35624 6.45063 6.72267 6.84073 7.04875 7.25028 7.47991 7.61484 8.28766 8.51966 8.94080 9.72459 11.09066 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.053610 B = 0.002318 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.165162 B =12078.144638 C =12266.556414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.110 4.110 3 C -0.124 4.124 4 C -0.151 4.151 5 H 0.108 0.892 6 C -0.095 4.095 7 C 0.084 3.916 8 H 0.067 0.933 9 O -0.372 6.372 10 C 0.061 3.939 11 C -0.115 4.115 12 C -0.117 4.117 13 C -0.102 4.102 14 C 0.006 3.994 15 C -0.601 4.601 16 H 0.048 0.952 17 C 0.012 3.988 18 N -0.915 5.915 19 Si 1.069 2.931 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.288 1.288 23 C -0.121 4.121 24 C -0.146 4.146 25 H 0.107 0.893 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.006 0.994 43 H 0.005 0.995 44 H 0.268 0.732 45 H 0.079 0.921 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.697 21.937 6.172 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.110 4.110 3 C -0.180 4.180 4 C -0.169 4.169 5 H 0.126 0.874 6 C -0.132 4.132 7 C 0.025 3.975 8 H 0.085 0.915 9 O -0.291 6.291 10 C -0.015 4.015 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.140 4.140 14 C -0.031 4.031 15 C -0.639 4.639 16 H 0.066 0.934 17 C -0.192 4.192 18 N -0.552 5.552 19 Si 0.897 3.103 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.158 4.158 24 C -0.164 4.164 25 H 0.125 0.875 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.918 20.471 5.851 27.194 hybrid contribution -0.794 1.414 0.259 1.642 sum -17.713 21.885 6.110 28.810 Atomic orbital electron populations 1.21301 0.91934 1.02014 1.01823 1.21684 0.94446 0.91328 1.03537 1.21440 1.00668 0.94242 1.01698 1.23265 0.96964 1.01746 0.94944 0.87385 1.22096 0.92429 1.00984 0.97729 1.23177 0.97690 0.82320 0.94277 0.91533 1.87938 1.40191 1.19817 1.81202 1.22669 0.86069 0.95975 0.96783 1.21565 0.99327 0.92250 1.02145 1.21601 0.95582 0.98147 1.00088 1.21481 1.00228 0.91817 1.00482 1.19239 0.92198 0.96630 0.94986 1.22098 1.06853 0.91785 1.43194 0.93393 1.25879 0.92622 1.07040 0.93619 1.70779 1.31818 1.10141 1.42414 0.83544 0.75999 0.74365 0.76342 1.20796 1.21469 1.21465 1.22526 0.93317 1.01311 0.98695 1.23327 0.96937 1.01421 0.94756 0.87468 0.92183 0.92118 0.92397 0.91783 0.92310 0.92249 0.90371 0.90152 0.93547 0.93600 0.91466 0.91463 0.92515 0.92520 0.93248 0.93245 0.97616 0.97625 0.92171 0.90244 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 9.84 37.16 0.37 -0.42 16 2 C -0.11 -0.88 2.68 -154.51 -0.41 -1.29 16 3 C -0.12 -0.83 8.45 37.16 0.31 -0.52 16 4 C -0.15 -1.41 6.62 -89.50 -0.59 -2.00 16 5 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 6 C -0.10 -0.86 5.98 -25.07 -0.15 -1.01 16 7 C 0.08 0.85 3.41 -24.74 -0.08 0.77 16 8 H 0.07 0.61 7.82 -51.93 -0.41 0.20 16 9 O -0.37 -4.88 10.11 -35.23 -0.36 -5.24 16 10 C 0.06 0.79 5.77 37.16 0.21 1.01 16 11 C -0.12 -1.71 5.58 -26.73 -0.15 -1.86 16 12 C -0.12 -2.01 5.21 -26.73 -0.14 -2.15 16 13 C -0.10 -2.20 5.15 -26.73 -0.14 -2.34 16 14 C 0.01 0.17 4.28 -27.88 -0.12 0.05 16 15 C -0.60 -17.79 9.11 -34.44 -0.31 -18.11 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 17 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 18 N -0.91 -28.81 13.65 55.43 0.76 -28.06 16 19 Si 1.07 25.96 29.90 -169.99 -5.08 20.87 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.12 -1.13 5.95 -25.07 -0.15 -1.28 16 24 C -0.15 -1.39 6.52 -89.50 -0.58 -1.97 16 25 H 0.11 1.07 8.13 -51.93 -0.42 0.64 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.37 8.01 -51.93 -0.42 -0.05 16 28 H 0.06 0.40 7.96 -51.93 -0.41 -0.01 16 29 H 0.06 0.43 4.98 -51.92 -0.26 0.17 16 30 H 0.06 0.36 8.04 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.60 6.79 -51.93 -0.35 0.25 16 34 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 43 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 44 H 0.27 8.40 7.22 -40.82 -0.29 8.10 16 45 H 0.08 0.63 5.98 -51.93 -0.31 0.32 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 359.51 15.07 5.42 5.42 Total: -1.00 -31.71 359.51 -10.12 -41.84 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -8.82 Total: -3.96 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: -2.04 Total: -30.87 kcal Atomic # 7 Polarization: -28.81 SS G_CDS: 0.76 Total: -28.06 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.36 Total: -5.24 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.71 -10.12 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.531 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds