Wall clock time and date at job start Mon Mar 30 2020 00:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 115.52639 * 2 1 4 4 C 1.52995 * 117.45885 * 145.49988 * 2 1 3 5 5 H 1.09000 * 119.29933 * 355.35283 * 4 2 1 6 6 C 1.54271 * 118.19870 * 201.21154 * 4 2 1 7 7 C 1.54889 * 104.19767 * 272.21202 * 6 4 2 8 8 H 1.09000 * 110.75721 * 156.43805 * 7 6 4 9 9 O 1.42901 * 110.75372 * 279.62562 * 7 6 4 10 10 C 1.42899 * 113.99916 * 209.99630 * 9 7 6 11 11 C 1.52997 * 109.47048 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47201 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47575 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47571 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47006 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00384 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99695 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99967 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99914 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46698 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47003 * 299.99988 * 19 17 15 22 22 H 1.48495 * 109.47181 * 60.00216 * 19 17 15 23 23 C 1.54892 * 102.74780 * 37.93943 * 7 6 4 24 24 C 1.53009 * 117.45768 * 214.53930 * 2 1 3 25 25 H 1.08993 * 119.29667 * 3.70963 * 24 2 1 26 26 H 1.08997 * 109.47130 * 274.50051 * 1 2 3 27 27 H 1.08999 * 109.47029 * 34.50139 * 1 2 3 28 28 H 1.09004 * 109.47142 * 154.50289 * 1 2 3 29 29 H 1.09007 * 109.46698 * 198.71175 * 3 2 1 30 30 H 1.09002 * 109.47288 * 318.70993 * 3 2 1 31 31 H 1.08996 * 109.46907 * 78.71415 * 3 2 1 32 32 H 1.09001 * 110.48764 * 153.53267 * 6 4 2 33 33 H 1.09004 * 110.48365 * 30.88883 * 6 4 2 34 34 H 1.09004 * 109.46708 * 60.00391 * 10 9 7 35 35 H 1.08997 * 109.47382 * 300.00508 * 10 9 7 36 36 H 1.08996 * 109.47284 * 60.00252 * 11 10 9 37 37 H 1.09005 * 109.47186 * 300.00141 * 11 10 9 38 38 H 1.09009 * 109.47197 * 59.99987 * 12 11 10 39 39 H 1.08997 * 109.47174 * 300.00357 * 12 11 10 40 40 H 1.09001 * 109.47004 * 59.99502 * 13 12 11 41 41 H 1.09005 * 109.47005 * 300.00098 * 13 12 11 42 42 H 1.08996 * 109.47253 * 59.99682 * 14 13 12 43 43 H 1.09001 * 109.46273 * 299.99712 * 14 13 12 44 44 H 0.96997 * 119.99911 * 0.02562 * 18 17 15 45 45 H 1.09000 * 110.48507 * 80.73453 * 23 7 6 46 46 H 1.09000 * 110.48480 * 203.38138 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1893 1.3806 0.0000 4 6 2.2355 -1.1188 0.7689 5 1 1.6407 -1.8253 1.3480 6 6 3.6963 -0.8916 1.2097 7 6 4.5369 -1.3690 -0.0005 8 1 5.5195 -0.8971 0.0014 9 8 4.6608 -2.7926 -0.0010 10 6 5.8734 -3.2702 -0.5870 11 6 5.8979 -4.7991 -0.5338 12 6 7.1965 -5.3105 -1.1607 13 6 7.2213 -6.8393 -1.1070 14 6 8.5202 -7.3507 -1.7334 15 6 8.5443 -8.8566 -1.6810 16 1 7.7163 -9.3951 -1.2442 17 6 9.6236 -9.5470 -2.1906 18 7 10.6317 -8.8913 -2.7229 19 14 9.6538 -11.4136 -2.1251 20 1 10.9144 -11.9098 -2.7331 21 1 9.5773 -11.8605 -0.7110 22 1 8.4939 -11.9542 -2.8785 23 6 3.6963 -0.8908 -1.2104 24 6 2.2355 -1.1184 -0.7698 25 1 1.6398 -1.8337 -1.3368 26 1 -0.3633 0.0806 1.0245 27 1 -0.3633 0.8469 -0.5821 28 1 -0.3634 -0.9276 -0.4424 29 1 3.2243 1.2890 -0.3297 30 1 1.6491 2.0413 -0.6781 31 1 2.1644 1.7951 1.0078 32 1 3.9257 -1.4883 2.0926 33 1 3.8757 0.1656 1.4055 34 1 6.7250 -2.8734 -0.0342 35 1 5.9292 -2.9422 -1.6249 36 1 5.0464 -5.1956 -1.0868 37 1 5.8419 -5.1275 0.5041 38 1 8.0479 -4.9140 -0.6074 39 1 7.2529 -4.9821 -2.1985 40 1 6.3700 -7.2362 -1.6600 41 1 7.1652 -7.1674 -0.0690 42 1 9.3713 -6.9539 -1.1800 43 1 8.5767 -7.0227 -2.7713 44 1 10.6161 -7.9220 -2.7566 45 1 3.8756 0.1665 -1.4055 46 1 3.9256 -1.4869 -2.0937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224370359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:11 Heat of formation + Delta-G solvation = -79.786018 kcal Electronic energy + Delta-G solvation = -19754.956462 eV Core-core repulsion = 16836.052007 eV Total energy + Delta-G solvation = -2918.904456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.28439 -38.66596 -37.04855 -35.11269 -33.37021 -31.66346 -29.30009 -29.08197 -28.19668 -27.56971 -25.10340 -22.69046 -22.31390 -21.73865 -20.76984 -19.44378 -18.87103 -17.51433 -17.07478 -16.85881 -15.93125 -15.69408 -15.54907 -15.46105 -15.04302 -14.88695 -14.29058 -14.14776 -13.57797 -13.50803 -13.22060 -13.04735 -12.97098 -12.76677 -12.70523 -12.59557 -12.47210 -12.24322 -12.14004 -11.96441 -11.95612 -11.86272 -11.53606 -11.46826 -11.39043 -10.65085 -10.60127 -10.55588 -10.40947 -10.31198 -8.71010 -6.41161 1.51211 1.60225 1.79839 2.54866 2.57969 2.68614 3.13765 3.48745 3.64877 3.77672 3.93468 4.02014 4.13759 4.17126 4.21162 4.25587 4.32357 4.33455 4.45250 4.50064 4.57827 4.67285 4.73859 4.75178 4.79230 4.82543 4.86345 4.88688 4.93194 5.00640 5.03577 5.09802 5.12542 5.17393 5.17635 5.23187 5.26132 5.29965 5.33221 5.46973 5.54201 5.55582 6.00159 6.17207 6.35141 6.56753 7.41039 8.69837 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.053610 B = 0.002318 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.165162 B =12078.144638 C =12266.556414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.124 4.124 4 C -0.163 4.163 5 H 0.099 0.901 6 C -0.091 4.091 7 C 0.075 3.925 8 H 0.080 0.920 9 O -0.392 6.392 10 C 0.067 3.933 11 C -0.107 4.107 12 C -0.106 4.106 13 C -0.094 4.094 14 C 0.005 3.995 15 C -0.623 4.623 16 H 0.049 0.951 17 C -0.043 4.043 18 N -0.938 5.938 19 Si 1.120 2.880 20 H -0.282 1.282 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.117 4.117 24 C -0.162 4.162 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.049 0.951 42 H -0.011 1.011 43 H -0.012 1.012 44 H 0.255 0.745 45 H 0.097 0.903 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.636 22.791 6.732 30.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.181 4.181 4 C -0.181 4.181 5 H 0.117 0.883 6 C -0.128 4.128 7 C 0.018 3.982 8 H 0.098 0.902 9 O -0.311 6.311 10 C -0.010 4.010 11 C -0.145 4.145 12 C -0.144 4.144 13 C -0.131 4.131 14 C -0.032 4.032 15 C -0.661 4.661 16 H 0.068 0.932 17 C -0.240 4.240 18 N -0.575 5.575 19 Si 0.940 3.060 20 H -0.207 1.207 21 H -0.193 1.193 22 H -0.194 1.194 23 C -0.155 4.155 24 C -0.180 4.180 25 H 0.113 0.887 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.007 0.993 43 H 0.007 0.993 44 H 0.064 0.936 45 H 0.115 0.885 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.879 21.356 6.420 28.582 hybrid contribution -0.537 1.182 0.089 1.301 sum -18.417 22.537 6.509 29.824 Atomic orbital electron populations 1.21341 0.91247 1.02251 1.02398 1.21803 0.94998 0.91520 1.01376 1.21479 1.00732 0.93388 1.02507 1.23310 0.97401 1.02714 0.94660 0.88313 1.22100 0.91938 1.01913 0.96891 1.23414 0.98738 0.80890 0.95166 0.90192 1.87902 1.40140 1.21775 1.81328 1.22534 0.86587 0.94390 0.97473 1.21403 0.97527 0.93968 1.01570 1.21439 0.97244 0.94981 1.00715 1.21342 0.97228 0.94838 0.99735 1.19218 0.94281 0.95548 0.94128 1.22560 1.06994 0.93486 1.43011 0.93241 1.27542 0.92074 1.11824 0.92555 1.70917 1.32951 1.09497 1.44131 0.82916 0.76681 0.68693 0.77713 1.20704 1.19338 1.19359 1.22505 0.92979 1.02115 0.97865 1.23362 0.97318 1.02532 0.94783 0.88667 0.91576 0.90975 0.92964 0.91597 0.91399 0.91413 0.91132 0.88244 0.92517 0.92911 0.91866 0.91641 0.92112 0.92247 0.93346 0.93254 0.99271 0.99341 0.93583 0.88511 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.84 71.98 0.71 -0.71 16 2 C -0.10 -1.40 2.68 -52.18 -0.14 -1.54 16 3 C -0.12 -1.37 8.45 71.98 0.61 -0.76 16 4 C -0.16 -2.88 6.62 -10.07 -0.07 -2.95 16 5 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 6 C -0.09 -1.52 5.98 31.67 0.19 -1.33 16 7 C 0.08 1.43 3.41 31.89 0.11 1.54 16 8 H 0.08 1.29 7.82 -2.39 -0.02 1.27 16 9 O -0.39 -9.87 10.11 -148.98 -1.51 -11.37 16 10 C 0.07 1.62 5.77 71.98 0.42 2.04 16 11 C -0.11 -3.07 5.58 30.59 0.17 -2.90 16 12 C -0.11 -3.59 5.21 30.59 0.16 -3.43 16 13 C -0.09 -4.02 5.15 30.59 0.16 -3.86 16 14 C 0.01 0.28 4.28 29.85 0.13 0.41 16 15 C -0.62 -37.13 9.11 25.60 0.23 -36.89 16 16 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 17 C -0.04 -2.58 5.46 84.66 0.46 -2.12 16 18 N -0.94 -59.83 13.65 21.45 0.29 -59.54 16 19 Si 1.12 51.52 29.90 68.60 2.05 53.57 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 C -0.12 -2.04 5.95 31.67 0.19 -1.85 16 24 C -0.16 -2.95 6.52 -10.07 -0.07 -3.02 16 25 H 0.10 1.92 8.13 -2.39 -0.02 1.90 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.73 8.01 -2.39 -0.02 0.71 16 28 H 0.05 0.70 7.96 -2.38 -0.02 0.68 16 29 H 0.07 0.70 4.98 -2.38 -0.01 0.69 16 30 H 0.07 0.64 8.04 -2.39 -0.02 0.62 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.10 1.26 6.79 -2.39 -0.02 1.24 16 34 H 0.06 1.27 8.11 -2.38 -0.02 1.25 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 42 H -0.01 -0.63 8.01 -2.39 -0.02 -0.65 16 43 H -0.01 -0.67 8.01 -2.39 -0.02 -0.69 16 44 H 0.25 16.44 7.22 -92.71 -0.67 15.77 16 45 H 0.10 1.32 5.98 -2.39 -0.01 1.31 16 46 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -67.83 359.51 5.10 -62.73 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 1.00 Total: 11.99 kcal Atomic # 6 Polarization: -60.64 SS G_CDS: 3.26 Total: -57.38 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.29 Total: -59.54 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.51 Total: -11.37 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 2.05 Total: 53.57 kcal Total: -67.83 5.10 -62.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224370359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.053 kcal (2) G-P(sol) polarization free energy of solvation -67.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds