Wall clock time and date at job start Mon Mar 30 2020 00:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86807 * 119.99649 * 2 1 4 4 H 1.48496 * 109.46899 * 269.99686 * 3 2 1 5 5 H 1.48502 * 109.47184 * 29.99535 * 3 2 1 6 6 H 1.48497 * 109.46900 * 149.99762 * 3 2 1 7 7 C 1.38630 * 120.00519 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 0.02562 * 7 2 1 9 9 O 1.34922 * 120.00356 * 180.02562 * 7 2 1 10 10 C 1.42905 * 117.00304 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46812 * 89.99713 * 10 9 7 12 12 C 1.53002 * 109.46982 * 60.00328 * 11 10 9 13 13 C 1.53000 * 109.46911 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46806 * 59.99917 * 13 12 11 15 15 C 1.52989 * 109.47566 * 299.99953 * 14 13 12 16 16 C 1.52997 * 109.47201 * 59.99856 * 15 14 13 17 17 C 1.52997 * 109.47264 * 210.00013 * 10 9 7 18 18 C 1.52996 * 109.47131 * 180.02562 * 17 10 9 19 19 C 1.53001 * 109.47486 * 180.02562 * 18 17 10 20 20 C 1.53000 * 109.46886 * 59.99437 * 19 18 17 21 21 C 1.52996 * 109.47328 * 300.00201 * 20 19 18 22 22 C 1.52997 * 109.47232 * 60.00091 * 17 10 9 23 23 H 0.96997 * 120.00284 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47103 * 330.00294 * 10 9 7 25 25 H 1.09002 * 109.46935 * 180.02562 * 11 10 9 26 26 H 1.08992 * 109.47060 * 299.99649 * 12 11 10 27 27 H 1.09004 * 109.47059 * 60.00133 * 12 11 10 28 28 H 1.09002 * 109.47398 * 299.99972 * 13 12 11 29 29 H 1.09001 * 109.47194 * 179.97438 * 13 12 11 30 30 H 1.09001 * 109.47248 * 179.97438 * 14 13 12 31 31 H 1.09002 * 109.46838 * 60.00357 * 14 13 12 32 32 H 1.09002 * 109.47371 * 300.00077 * 15 14 13 33 33 H 1.09000 * 109.47424 * 180.02562 * 15 14 13 34 34 H 1.09001 * 109.47375 * 180.02562 * 16 15 14 35 35 H 1.09002 * 109.47497 * 60.00054 * 16 15 14 36 36 H 1.09001 * 109.46832 * 299.99892 * 17 10 9 37 37 H 1.09001 * 109.46997 * 299.99574 * 18 17 10 38 38 H 1.09004 * 109.47298 * 59.99717 * 18 17 10 39 39 H 1.09001 * 109.46652 * 299.99782 * 19 18 17 40 40 H 1.08992 * 109.47514 * 179.97438 * 19 18 17 41 41 H 1.09000 * 109.46968 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.47194 * 60.00677 * 20 19 18 43 43 H 1.09001 * 109.47372 * 300.00367 * 21 20 19 44 44 H 1.09004 * 109.47108 * 180.02562 * 21 20 19 45 45 H 1.09002 * 109.46777 * 299.99578 * 22 17 10 46 46 H 1.08988 * 109.47529 * 59.99846 * 22 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6179 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4471 2.6528 0.6999 6 1 3.5473 1.4403 0.7001 7 6 2.0091 -1.2005 0.0005 8 1 1.4692 -2.1359 0.0005 9 8 3.3583 -1.2005 0.0011 10 6 4.0072 -2.4737 0.0022 11 6 4.2392 -2.9291 -1.4400 12 6 5.1210 -1.9079 -2.1616 13 6 5.3535 -2.3636 -3.6035 14 6 4.0093 -2.4773 -4.3255 15 6 3.1276 -3.4983 -3.6039 16 6 2.8951 -3.0427 -2.1620 17 6 5.3515 -2.3604 0.7238 18 6 6.0465 -3.7234 0.7244 19 6 7.3905 -3.6104 1.4467 20 6 7.1578 -3.1559 2.8889 21 6 6.4629 -1.7928 2.8883 22 6 5.1194 -1.9051 2.1659 23 1 -0.4850 0.8400 -0.0004 24 1 3.3790 -3.2012 0.5162 25 1 4.7337 -3.9004 -1.4392 26 1 4.6261 -0.9368 -2.1624 27 1 6.0788 -1.8273 -1.6475 28 1 5.8486 -3.3347 -3.6024 29 1 5.9814 -1.6359 -4.1178 30 1 4.1750 -2.8014 -5.3529 31 1 3.5143 -1.5061 -4.3267 32 1 3.6226 -4.4694 -3.6027 33 1 2.1702 -3.5796 -4.1185 34 1 2.2673 -3.7704 -1.6478 35 1 2.4001 -2.0716 -2.1630 36 1 5.9796 -1.6330 0.2097 37 1 5.4185 -4.4512 1.2383 38 1 6.2118 -4.0475 -0.3031 39 1 8.0187 -2.8825 0.9332 40 1 7.8854 -4.5815 1.4475 41 1 8.1153 -3.0749 3.4034 42 1 6.5296 -3.8837 3.4024 43 1 7.0911 -1.0649 2.3748 44 1 6.2975 -1.4688 3.9158 45 1 4.6246 -0.9339 2.1651 46 1 4.4913 -2.6325 2.6800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224381408.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:18 Heat of formation + Delta-G solvation = -90.593722 kcal Electronic energy + Delta-G solvation = -22333.224950 eV Core-core repulsion = 19413.851837 eV Total energy + Delta-G solvation = -2919.373113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.41154 -37.47422 -35.84712 -32.51211 -31.34054 -30.42683 -30.21094 -29.48325 -25.43075 -23.59350 -22.34473 -22.30822 -21.47634 -19.87681 -19.43360 -18.75673 -17.44282 -15.51961 -15.19333 -15.06587 -14.17361 -13.98268 -13.89134 -13.77283 -13.55241 -13.50840 -12.86619 -12.63617 -12.32834 -11.93777 -11.81380 -11.66502 -11.66020 -11.52428 -11.07263 -10.96745 -10.84055 -10.66198 -10.64413 -10.45374 -10.23786 -10.13812 -10.04627 -9.86536 -9.71915 -9.65607 -9.22554 -9.10903 -8.92111 -8.04388 -5.91593 -3.55079 3.45099 3.48946 3.65030 4.62094 4.84962 4.95791 5.03147 5.19869 5.21734 5.25038 5.33524 5.42967 5.52476 5.62498 5.69809 5.76918 5.80604 5.82108 5.85159 5.87551 5.97522 6.04093 6.05850 6.07004 6.12231 6.13784 6.22142 6.27356 6.36493 6.40104 6.42130 6.44435 6.48238 6.59827 6.61764 6.66890 6.79933 6.85797 6.89888 6.97471 7.00264 7.06459 7.38220 8.01985 8.45815 9.49624 10.07927 11.21623 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.009321 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.618926 B = 3003.223028 C = 4490.670337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.041 3.959 3 Si 0.899 3.101 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.339 4.339 8 H 0.078 0.922 9 O -0.319 6.319 10 C 0.118 3.882 11 C -0.100 4.100 12 C -0.108 4.108 13 C -0.116 4.116 14 C -0.118 4.118 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.082 4.082 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.110 4.110 23 H 0.266 0.734 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.409 -7.039 -1.282 15.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.155 4.155 3 Si 0.727 3.273 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.189 1.189 7 C -0.417 4.417 8 H 0.096 0.904 9 O -0.234 6.234 10 C 0.059 3.941 11 C -0.119 4.119 12 C -0.145 4.145 13 C -0.154 4.154 14 C -0.155 4.155 15 C -0.153 4.153 16 C -0.153 4.153 17 C -0.101 4.101 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.147 4.147 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.403 -6.760 -1.273 15.065 hybrid contribution 0.111 0.556 -0.060 0.571 sum 13.514 -6.203 -1.333 14.929 Atomic orbital electron populations 1.69681 1.05281 1.26842 1.54557 1.24250 0.94729 0.97849 0.98720 0.86275 0.80097 0.82921 0.78001 1.21056 1.22163 1.18878 1.20379 0.78747 0.94685 1.47920 0.90425 1.85251 1.20038 1.24991 1.93153 1.21694 0.92032 0.87708 0.92633 1.21655 0.96131 0.97595 0.96536 1.21492 0.99013 1.00227 0.93805 1.21529 0.96755 1.00286 0.96784 1.21509 0.96230 1.00033 0.97758 1.21526 0.98796 0.97818 0.97191 1.21643 0.96827 1.03594 0.93222 1.21211 0.96433 0.96464 0.95961 1.21601 0.95874 0.97402 1.00182 1.21507 0.97473 1.00472 0.95920 1.21535 0.99754 0.97610 0.96661 1.21548 0.97399 0.96656 1.00062 1.21467 0.95892 1.02642 0.94749 0.92407 0.93928 0.92365 0.90961 0.92737 0.92915 0.92960 0.93196 0.91884 0.93249 0.92755 0.93143 0.88817 0.90954 0.92280 0.91814 0.92279 0.92626 0.92814 0.92264 0.92422 0.92586 0.90693 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.07 13.96 55.48 0.77 -27.29 16 2 C 0.04 1.18 5.49 -17.51 -0.10 1.08 16 3 Si 0.90 23.02 28.62 -169.99 -4.86 18.15 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.26 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.34 -9.38 7.92 30.88 0.24 -9.14 16 8 H 0.08 2.29 7.63 -52.49 -0.40 1.88 16 9 O -0.32 -7.77 6.78 -16.49 -0.11 -7.88 16 10 C 0.12 2.33 1.66 -26.73 -0.04 2.28 16 11 C -0.10 -1.75 1.72 -90.62 -0.16 -1.91 16 12 C -0.11 -1.81 4.71 -26.73 -0.13 -1.93 16 13 C -0.12 -1.67 5.92 -26.73 -0.16 -1.82 16 14 C -0.12 -1.75 5.92 -26.74 -0.16 -1.91 16 15 C -0.12 -1.82 5.92 -26.74 -0.16 -1.98 16 16 C -0.12 -2.18 4.31 -26.73 -0.12 -2.30 16 17 C -0.08 -1.36 1.64 -90.62 -0.15 -1.50 16 18 C -0.11 -1.53 4.85 -26.73 -0.13 -1.66 16 19 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 20 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 21 C -0.12 -1.62 5.92 -26.76 -0.16 -1.78 16 22 C -0.11 -1.84 5.06 -26.76 -0.14 -1.98 16 23 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 24 H 0.04 0.89 7.80 -51.93 -0.41 0.49 16 25 H 0.06 0.92 6.43 -51.93 -0.33 0.59 16 26 H 0.07 1.42 7.68 -51.93 -0.40 1.03 16 27 H 0.05 0.85 6.43 -51.93 -0.33 0.52 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 2.14 6.27 -51.93 -0.33 1.82 16 36 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.83 6.43 -51.93 -0.33 0.50 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.48 7.68 -51.93 -0.40 1.08 16 46 H 0.06 0.95 8.14 -51.94 -0.42 0.52 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -29.11 336.79 -9.52 -38.63 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.74 Total: 0.94 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: -1.66 Total: -27.62 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.77 Total: -27.29 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.11 Total: -7.88 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.86 Total: 18.15 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.11 -9.52 -38.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381408.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.964 kcal (2) G-P(sol) polarization free energy of solvation -29.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds