Wall clock time and date at job start Mon Mar 30 2020 00:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86807 * 119.99649 * 2 1 4 4 H 1.48496 * 109.46899 * 269.99686 * 3 2 1 5 5 H 1.48502 * 109.47184 * 29.99535 * 3 2 1 6 6 H 1.48497 * 109.46900 * 149.99762 * 3 2 1 7 7 C 1.38630 * 120.00519 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 0.02562 * 7 2 1 9 9 O 1.34922 * 120.00356 * 180.02562 * 7 2 1 10 10 C 1.42905 * 117.00304 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46812 * 89.99713 * 10 9 7 12 12 C 1.53002 * 109.46982 * 60.00328 * 11 10 9 13 13 C 1.53000 * 109.46911 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.46806 * 59.99917 * 13 12 11 15 15 C 1.52989 * 109.47566 * 299.99953 * 14 13 12 16 16 C 1.52997 * 109.47201 * 59.99856 * 15 14 13 17 17 C 1.52997 * 109.47264 * 210.00013 * 10 9 7 18 18 C 1.52996 * 109.47131 * 180.02562 * 17 10 9 19 19 C 1.53001 * 109.47486 * 180.02562 * 18 17 10 20 20 C 1.53000 * 109.46886 * 59.99437 * 19 18 17 21 21 C 1.52996 * 109.47328 * 300.00201 * 20 19 18 22 22 C 1.52997 * 109.47232 * 60.00091 * 17 10 9 23 23 H 0.96997 * 120.00284 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47103 * 330.00294 * 10 9 7 25 25 H 1.09002 * 109.46935 * 180.02562 * 11 10 9 26 26 H 1.08992 * 109.47060 * 299.99649 * 12 11 10 27 27 H 1.09004 * 109.47059 * 60.00133 * 12 11 10 28 28 H 1.09002 * 109.47398 * 299.99972 * 13 12 11 29 29 H 1.09001 * 109.47194 * 179.97438 * 13 12 11 30 30 H 1.09001 * 109.47248 * 179.97438 * 14 13 12 31 31 H 1.09002 * 109.46838 * 60.00357 * 14 13 12 32 32 H 1.09002 * 109.47371 * 300.00077 * 15 14 13 33 33 H 1.09000 * 109.47424 * 180.02562 * 15 14 13 34 34 H 1.09001 * 109.47375 * 180.02562 * 16 15 14 35 35 H 1.09002 * 109.47497 * 60.00054 * 16 15 14 36 36 H 1.09001 * 109.46832 * 299.99892 * 17 10 9 37 37 H 1.09001 * 109.46997 * 299.99574 * 18 17 10 38 38 H 1.09004 * 109.47298 * 59.99717 * 18 17 10 39 39 H 1.09001 * 109.46652 * 299.99782 * 19 18 17 40 40 H 1.08992 * 109.47514 * 179.97438 * 19 18 17 41 41 H 1.09000 * 109.46968 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.47194 * 60.00677 * 20 19 18 43 43 H 1.09001 * 109.47372 * 300.00367 * 21 20 19 44 44 H 1.09004 * 109.47108 * 180.02562 * 21 20 19 45 45 H 1.09002 * 109.46777 * 299.99578 * 22 17 10 46 46 H 1.08988 * 109.47529 * 59.99846 * 22 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6179 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4471 2.6528 0.6999 6 1 3.5473 1.4403 0.7001 7 6 2.0091 -1.2005 0.0005 8 1 1.4692 -2.1359 0.0005 9 8 3.3583 -1.2005 0.0011 10 6 4.0072 -2.4737 0.0022 11 6 4.2392 -2.9291 -1.4400 12 6 5.1210 -1.9079 -2.1616 13 6 5.3535 -2.3636 -3.6035 14 6 4.0093 -2.4773 -4.3255 15 6 3.1276 -3.4983 -3.6039 16 6 2.8951 -3.0427 -2.1620 17 6 5.3515 -2.3604 0.7238 18 6 6.0465 -3.7234 0.7244 19 6 7.3905 -3.6104 1.4467 20 6 7.1578 -3.1559 2.8889 21 6 6.4629 -1.7928 2.8883 22 6 5.1194 -1.9051 2.1659 23 1 -0.4850 0.8400 -0.0004 24 1 3.3790 -3.2012 0.5162 25 1 4.7337 -3.9004 -1.4392 26 1 4.6261 -0.9368 -2.1624 27 1 6.0788 -1.8273 -1.6475 28 1 5.8486 -3.3347 -3.6024 29 1 5.9814 -1.6359 -4.1178 30 1 4.1750 -2.8014 -5.3529 31 1 3.5143 -1.5061 -4.3267 32 1 3.6226 -4.4694 -3.6027 33 1 2.1702 -3.5796 -4.1185 34 1 2.2673 -3.7704 -1.6478 35 1 2.4001 -2.0716 -2.1630 36 1 5.9796 -1.6330 0.2097 37 1 5.4185 -4.4512 1.2383 38 1 6.2118 -4.0475 -0.3031 39 1 8.0187 -2.8825 0.9332 40 1 7.8854 -4.5815 1.4475 41 1 8.1153 -3.0749 3.4034 42 1 6.5296 -3.8837 3.4024 43 1 7.0911 -1.0649 2.3748 44 1 6.2975 -1.4688 3.9158 45 1 4.6246 -0.9339 2.1651 46 1 4.4913 -2.6325 2.6800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224381408.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:18 Heat of formation + Delta-G solvation = -104.747464 kcal Electronic energy + Delta-G solvation = -22333.838702 eV Core-core repulsion = 19413.851837 eV Total energy + Delta-G solvation = -2919.986865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.199 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.86301 -38.69231 -37.59088 -34.30645 -33.16622 -31.59893 -31.54587 -30.72419 -27.22230 -25.38555 -23.64995 -23.52014 -22.69251 -21.17623 -20.71522 -20.22373 -19.55750 -17.36144 -16.54618 -16.41688 -15.86950 -15.58108 -15.00916 -14.98790 -14.85890 -14.76867 -14.57626 -14.23501 -13.81304 -13.52728 -13.39280 -13.06739 -12.98305 -12.91793 -12.71052 -12.47008 -12.13380 -12.04475 -11.95424 -11.91939 -11.77733 -11.66576 -11.42325 -11.33328 -11.17284 -10.95903 -10.81153 -10.69938 -10.56609 -10.06513 -8.18713 -5.81455 1.35718 1.37819 1.56905 2.45749 3.14535 3.39422 3.71079 3.92282 3.93905 3.95479 4.06005 4.07736 4.34527 4.40672 4.42935 4.44610 4.56381 4.62529 4.68592 4.69926 4.73813 4.76015 4.77789 4.78430 4.85699 4.89017 4.96459 5.07006 5.16007 5.20646 5.24444 5.30806 5.33697 5.35069 5.38436 5.42527 5.43766 5.49543 5.53119 5.55555 5.62873 5.65108 5.75130 5.81373 6.25691 7.22949 7.96959 8.98186 Molecular weight = 266.20amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.009321 C = 0.006234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.618926 B = 3003.223028 C = 4490.670337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.020 4.020 3 Si 0.960 3.040 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.313 4.313 8 H 0.046 0.954 9 O -0.331 6.331 10 C 0.108 3.892 11 C -0.093 4.093 12 C -0.105 4.105 13 C -0.110 4.110 14 C -0.118 4.118 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.075 4.075 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.112 4.112 23 H 0.267 0.733 24 H 0.021 0.979 25 H 0.089 0.911 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.033 0.967 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.035 0.965 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.138 -8.234 -2.015 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.211 4.211 3 Si 0.787 3.213 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.392 4.392 8 H 0.063 0.937 9 O -0.246 6.246 10 C 0.049 3.951 11 C -0.112 4.112 12 C -0.142 4.142 13 C -0.147 4.147 14 C -0.156 4.156 15 C -0.148 4.148 16 C -0.152 4.152 17 C -0.093 4.093 18 C -0.145 4.145 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.152 4.152 22 C -0.149 4.149 23 H 0.076 0.924 24 H 0.039 0.961 25 H 0.107 0.893 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.156 -7.970 -2.006 19.023 hybrid contribution -1.078 0.817 0.192 1.366 sum 16.078 -7.153 -1.814 17.691 Atomic orbital electron populations 1.69796 1.06747 1.27625 1.56874 1.24987 0.95542 1.01175 0.99441 0.85315 0.78822 0.79123 0.78085 1.20585 1.21474 1.18608 1.20203 0.80173 0.93297 1.45557 0.93659 1.85203 1.18002 1.28166 1.93272 1.22094 0.92954 0.85222 0.94787 1.21598 0.95714 0.99314 0.94540 1.21452 0.98864 0.97868 0.96057 1.21511 0.96642 1.02021 0.94562 1.21527 0.96204 0.98445 0.99417 1.21488 0.99511 0.99273 0.94507 1.21540 0.97133 1.00407 0.96108 1.21190 0.94394 0.98757 0.94994 1.21579 0.96721 0.94803 1.01409 1.21506 0.96140 1.02023 0.95289 1.21535 1.00542 0.95960 0.97267 1.21512 0.95415 0.98415 0.99851 1.21443 0.97656 1.00132 0.95694 0.92361 0.96107 0.89319 0.94848 0.91061 0.90335 0.91351 0.90277 0.94423 0.90589 0.92929 0.94852 0.93813 0.91018 0.92539 0.90551 0.91629 0.90239 0.90532 0.92303 0.92070 0.92018 0.94599 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.56 13.96 21.61 0.30 -61.26 16 2 C -0.02 -1.22 5.49 84.82 0.47 -0.75 16 3 Si 0.96 49.20 28.62 68.60 1.96 51.16 16 4 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.26 -13.13 7.11 99.48 0.71 -12.43 16 7 C -0.31 -18.38 7.92 67.91 0.54 -17.84 16 8 H 0.05 2.89 7.63 -2.91 -0.02 2.87 16 9 O -0.33 -16.82 6.78 -81.91 -0.56 -17.38 16 10 C 0.11 4.32 1.66 30.60 0.05 4.37 16 11 C -0.09 -3.20 1.72 -10.79 -0.02 -3.22 16 12 C -0.10 -3.35 4.71 30.60 0.14 -3.21 16 13 C -0.11 -2.79 5.92 30.60 0.18 -2.60 16 14 C -0.12 -3.28 5.92 30.59 0.18 -3.10 16 15 C -0.11 -3.32 5.92 30.59 0.18 -3.14 16 16 C -0.11 -4.44 4.31 30.59 0.13 -4.31 16 17 C -0.07 -2.41 1.64 -10.80 -0.02 -2.43 16 18 C -0.11 -2.61 4.85 30.59 0.15 -2.46 16 19 C -0.11 -2.16 5.92 30.59 0.18 -1.98 16 20 C -0.12 -2.34 5.92 30.59 0.18 -2.15 16 21 C -0.11 -2.92 5.92 30.58 0.18 -2.74 16 22 C -0.11 -3.77 5.06 30.58 0.15 -3.61 16 23 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 24 H 0.02 0.92 7.80 -2.39 -0.02 0.90 16 25 H 0.09 2.55 6.43 -2.39 -0.02 2.53 16 26 H 0.03 1.32 7.68 -2.39 -0.02 1.30 16 27 H 0.07 2.03 6.43 -2.39 -0.02 2.01 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 2.12 6.27 -2.39 -0.01 2.11 16 36 H 0.07 2.33 6.43 -2.39 -0.02 2.32 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.67 6.43 -2.38 -0.02 1.65 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 45 H 0.04 1.46 7.68 -2.39 -0.02 1.44 16 46 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -67.12 336.79 5.30 -61.82 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.90 Total: 14.84 kcal Atomic # 6 Polarization: -51.86 SS G_CDS: 2.68 Total: -49.17 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.30 Total: -61.26 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.56 Total: -17.38 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 1.96 Total: 51.16 kcal Total: -67.12 5.30 -61.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224381408.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.928 kcal (2) G-P(sol) polarization free energy of solvation -67.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds