Wall clock time and date at job start Mon Mar 30 2020 00:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00188 * 2 1 4 4 H 1.48495 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46665 * 299.99506 * 3 2 1 6 6 H 1.48493 * 109.47128 * 59.99174 * 3 2 1 7 7 C 1.37882 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47284 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47340 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46709 * 60.00367 * 11 10 9 13 13 N 1.46896 * 109.47190 * 60.00109 * 12 11 10 14 14 C 1.46898 * 110.99847 * 153.83037 * 13 12 11 15 15 H 1.09004 * 109.79522 * 33.97015 * 14 13 12 16 16 C 1.54310 * 109.63458 * 273.47221 * 14 13 12 17 17 C 1.45879 * 112.11582 * 161.72129 * 16 14 13 18 18 C 1.54305 * 112.19186 * 61.16409 * 17 16 14 19 19 C 1.50445 * 108.49661 * 281.46694 * 18 17 16 20 20 N 1.48003 * 112.82584 * 93.72516 * 19 18 17 21 21 C 1.47996 * 114.63013 * 318.08744 * 20 19 18 22 22 C 1.53002 * 109.47119 * 299.99873 * 12 11 10 23 23 C 1.52997 * 109.46769 * 59.99610 * 9 7 2 24 24 H 0.96992 * 119.99973 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46768 * 299.99963 * 9 7 2 26 26 H 1.09010 * 109.46967 * 59.99704 * 10 9 7 27 27 H 1.08995 * 109.47166 * 300.00600 * 10 9 7 28 28 H 1.09003 * 109.47233 * 300.00431 * 11 10 9 29 29 H 1.09003 * 109.47240 * 180.02562 * 11 10 9 30 30 H 1.08998 * 109.46663 * 180.02562 * 12 11 10 31 31 H 1.00897 * 111.00181 * 29.87426 * 13 12 11 32 32 H 1.09001 * 108.93772 * 41.06569 * 16 14 13 33 33 H 1.09004 * 108.94048 * 282.37106 * 16 14 13 34 34 H 1.08996 * 108.93784 * 181.86847 * 17 16 14 35 35 H 1.09002 * 108.93403 * 300.46696 * 17 16 14 36 36 H 1.09003 * 109.62618 * 41.16738 * 18 17 16 37 37 H 1.09001 * 109.63469 * 161.76089 * 18 17 16 38 38 H 1.09004 * 108.80994 * 214.58568 * 19 18 17 39 39 H 1.08999 * 108.81444 * 332.86303 * 19 18 17 40 40 H 1.00898 * 110.99675 * 191.34092 * 20 19 18 41 41 H 1.09004 * 108.80771 * 78.95902 * 21 20 19 42 42 H 1.09000 * 108.80745 * 197.33879 * 21 20 19 43 43 H 1.08995 * 109.47353 * 180.02562 * 22 12 11 44 44 H 1.09002 * 109.46764 * 300.00451 * 22 12 11 45 45 H 1.08998 * 109.47820 * 300.00157 * 23 9 7 46 46 H 1.09003 * 109.47000 * 60.00234 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4993 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4802 -4.9872 0.0012 12 6 0.6003 -5.0685 -1.2478 13 7 1.4445 -4.9911 -2.4475 14 6 0.8015 -5.6580 -3.5876 15 1 -0.2792 -5.5286 -3.5294 16 6 1.1453 -7.1622 -3.5696 17 6 0.2265 -7.9453 -4.3885 18 6 0.2650 -7.5245 -5.8725 19 6 -0.5382 -6.2624 -6.0316 20 7 0.2901 -5.0393 -5.9401 21 6 1.3152 -5.0670 -4.8730 22 6 -0.3940 -3.9056 -1.2479 23 6 0.3719 -2.5805 -1.2490 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8893 28 1 0.8538 -5.0446 0.8914 29 1 2.1886 -5.8157 0.0016 30 1 0.0550 -6.0123 -1.2471 31 1 2.3595 -5.3779 -2.2713 32 1 1.0993 -7.5233 -2.5422 33 1 2.1589 -7.2980 -3.9469 34 1 0.4952 -8.9989 -4.3124 35 1 -0.7866 -7.8121 -4.0091 36 1 1.2963 -7.3428 -6.1749 37 1 -0.1668 -8.3134 -6.4883 38 1 -1.0323 -6.2803 -7.0031 39 1 -1.3001 -6.2300 -5.2528 40 1 -0.2881 -4.2158 -5.8647 41 1 2.1648 -5.6568 -5.2171 42 1 1.6503 -4.0477 -4.6810 43 1 -1.0212 -3.9638 -2.1374 44 1 -1.0203 -3.9631 -0.3577 45 1 -0.3364 -1.7520 -1.2495 46 1 0.9989 -2.5229 -2.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246093026.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:10 Heat of formation + Delta-G solvation = -21.140754 kcal Electronic energy + Delta-G solvation = -21792.252245 eV Core-core repulsion = 18908.183590 eV Total energy + Delta-G solvation = -2884.068655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.58555 -37.71279 -34.39910 -33.25913 -32.41431 -30.18035 -29.64553 -27.94780 -25.61054 -24.48044 -23.96907 -21.61186 -20.64030 -20.46337 -19.71378 -18.15803 -16.50277 -16.22260 -15.54770 -15.39361 -14.81334 -14.56348 -14.16708 -13.74923 -13.65537 -13.41852 -12.78197 -12.65146 -12.51466 -12.27319 -12.00963 -11.47553 -11.40495 -11.30059 -11.15462 -10.95509 -10.85931 -10.75995 -10.60383 -10.55235 -10.36949 -10.16719 -10.01905 -9.68238 -9.20774 -8.81152 -8.48949 -8.37030 -8.15371 -7.83581 -5.86216 -3.91247 3.36010 3.43994 3.48130 4.11609 4.47775 4.53614 4.58000 4.66897 4.97208 5.10924 5.19574 5.39096 5.42672 5.43987 5.46967 5.57732 5.63364 5.72715 5.76933 5.84306 5.86468 5.96739 6.03188 6.16110 6.19363 6.20262 6.31285 6.38759 6.46641 6.53005 6.60722 6.82381 6.90793 7.06893 7.10336 7.32358 7.38652 7.52058 7.59682 7.72435 7.80621 7.90810 8.23470 8.33792 8.63350 9.13242 9.72383 11.19095 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.027103 B = 0.004803 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.832110 B = 5828.052170 C = 6312.883458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.506 4.506 8 H 0.052 0.948 9 C 0.051 3.949 10 C -0.102 4.102 11 C -0.119 4.119 12 C 0.095 3.905 13 N -0.661 5.661 14 C 0.063 3.937 15 H 0.074 0.926 16 C -0.148 4.148 17 C -0.116 4.116 18 C -0.120 4.120 19 C 0.063 3.937 20 N -0.700 5.700 21 C 0.069 3.931 22 C -0.104 4.104 23 C -0.096 4.096 24 H 0.256 0.744 25 H 0.017 0.983 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.023 0.977 31 H 0.336 0.664 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.345 0.655 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.034 0.966 44 H 0.048 0.952 45 H 0.080 0.920 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 -15.010 -8.840 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.714 3.286 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.544 4.544 8 H 0.070 0.930 9 C 0.033 3.967 10 C -0.139 4.139 11 C -0.157 4.157 12 C -0.014 4.014 13 N -0.292 5.292 14 C -0.049 4.049 15 H 0.092 0.908 16 C -0.188 4.188 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.066 4.066 20 N -0.332 5.332 21 C -0.060 4.060 22 C -0.142 4.142 23 C -0.134 4.134 24 H 0.066 0.934 25 H 0.035 0.965 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.155 0.845 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.163 0.837 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.526 -14.486 -9.450 17.303 hybrid contribution -0.111 0.000 1.096 1.102 sum -0.637 -14.485 -8.353 16.733 Atomic orbital electron populations 1.69905 1.05807 1.25879 1.51549 1.24948 0.94775 0.98825 0.95475 0.86639 0.80222 0.84329 0.77399 1.19910 1.21164 1.21282 1.21282 0.92800 0.90887 1.49426 0.92970 1.18606 0.92590 0.91306 0.94198 1.21533 0.98616 0.93861 0.99906 1.21757 0.98238 0.98886 0.96792 1.21502 0.94240 0.96516 0.89158 1.60649 1.05177 1.58646 1.04683 1.22030 0.99357 0.90423 0.93099 0.90800 1.21328 1.00125 0.97323 0.99984 1.20529 1.00078 0.99476 0.95333 1.21418 1.01723 0.96633 0.96040 1.21606 0.94625 0.89997 1.00382 1.60268 1.20096 1.04515 1.48278 1.21795 0.94148 1.02698 0.87393 1.21613 0.96447 0.97272 0.98886 1.21427 0.99166 0.93628 0.99182 0.93375 0.96537 0.94310 0.92500 0.92281 0.94063 0.95862 0.84516 0.92488 0.91953 0.92458 0.92445 0.90729 0.91470 0.91522 0.95357 0.83699 0.91889 0.89539 0.94710 0.93374 0.90129 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 11.32 55.43 0.63 -25.25 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.51 -14.08 8.56 -34.44 -0.29 -14.37 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.28 2.10 -91.77 -0.19 1.09 16 10 C -0.10 -2.10 4.98 -26.74 -0.13 -2.23 16 11 C -0.12 -2.04 5.29 -26.73 -0.14 -2.18 16 12 C 0.10 1.57 2.55 -67.71 -0.17 1.40 16 13 N -0.66 -9.96 4.46 -100.33 -0.45 -10.41 16 14 C 0.06 0.81 1.95 -68.27 -0.13 0.68 16 15 H 0.07 1.07 6.16 -51.93 -0.32 0.75 16 16 C -0.15 -1.63 4.59 -29.42 -0.14 -1.77 16 17 C -0.12 -1.14 5.29 -29.42 -0.16 -1.29 16 18 C -0.12 -1.14 5.63 -27.32 -0.15 -1.30 16 19 C 0.06 0.65 6.01 -4.49 -0.03 0.62 16 20 N -0.70 -8.34 6.89 -114.87 -0.79 -9.13 16 21 C 0.07 0.88 5.74 -4.46 -0.03 0.86 16 22 C -0.10 -2.03 5.53 -26.70 -0.15 -2.18 16 23 C -0.10 -2.27 4.82 -26.71 -0.13 -2.40 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 27 H 0.06 1.18 7.45 -51.93 -0.39 0.79 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 30 H 0.02 0.36 7.32 -51.93 -0.38 -0.02 16 31 H 0.34 4.79 7.86 -39.29 -0.31 4.48 16 32 H 0.06 0.66 7.52 -51.93 -0.39 0.27 16 33 H 0.06 0.67 7.51 -51.93 -0.39 0.27 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.59 7.52 -51.93 -0.39 0.20 16 36 H 0.07 0.77 7.08 -51.93 -0.37 0.40 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.03 0.31 6.58 -51.93 -0.34 -0.03 16 40 H 0.35 4.07 8.91 -39.29 -0.35 3.72 16 41 H 0.06 0.78 6.58 -51.93 -0.34 0.44 16 42 H 0.09 1.27 7.94 -51.93 -0.41 0.86 16 43 H 0.03 0.65 7.54 -51.93 -0.39 0.25 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 46 H 0.05 1.17 7.60 -51.93 -0.39 0.78 16 LS Contribution 332.70 15.07 5.01 5.01 Total: -1.00 -28.00 332.70 -10.96 -38.95 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.40 Total: 5.64 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -1.94 Total: -21.47 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.61 Total: -44.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.00 -10.96 -38.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246093026.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.814 kcal (2) G-P(sol) polarization free energy of solvation -27.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds