Wall clock time and date at job start Mon Mar 30 2020 00:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00188 * 2 1 4 4 H 1.48495 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46665 * 299.99506 * 3 2 1 6 6 H 1.48493 * 109.47128 * 59.99174 * 3 2 1 7 7 C 1.37882 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00153 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47284 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47340 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46709 * 60.00367 * 11 10 9 13 13 N 1.46896 * 109.47190 * 60.00109 * 12 11 10 14 14 C 1.46898 * 110.99847 * 153.83037 * 13 12 11 15 15 H 1.09004 * 109.79522 * 33.97015 * 14 13 12 16 16 C 1.54310 * 109.63458 * 273.47221 * 14 13 12 17 17 C 1.45879 * 112.11582 * 161.72129 * 16 14 13 18 18 C 1.54305 * 112.19186 * 61.16409 * 17 16 14 19 19 C 1.50445 * 108.49661 * 281.46694 * 18 17 16 20 20 N 1.48003 * 112.82584 * 93.72516 * 19 18 17 21 21 C 1.47996 * 114.63013 * 318.08744 * 20 19 18 22 22 C 1.53002 * 109.47119 * 299.99873 * 12 11 10 23 23 C 1.52997 * 109.46769 * 59.99610 * 9 7 2 24 24 H 0.96992 * 119.99973 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46768 * 299.99963 * 9 7 2 26 26 H 1.09010 * 109.46967 * 59.99704 * 10 9 7 27 27 H 1.08995 * 109.47166 * 300.00600 * 10 9 7 28 28 H 1.09003 * 109.47233 * 300.00431 * 11 10 9 29 29 H 1.09003 * 109.47240 * 180.02562 * 11 10 9 30 30 H 1.08998 * 109.46663 * 180.02562 * 12 11 10 31 31 H 1.00897 * 111.00181 * 29.87426 * 13 12 11 32 32 H 1.09001 * 108.93772 * 41.06569 * 16 14 13 33 33 H 1.09004 * 108.94048 * 282.37106 * 16 14 13 34 34 H 1.08996 * 108.93784 * 181.86847 * 17 16 14 35 35 H 1.09002 * 108.93403 * 300.46696 * 17 16 14 36 36 H 1.09003 * 109.62618 * 41.16738 * 18 17 16 37 37 H 1.09001 * 109.63469 * 161.76089 * 18 17 16 38 38 H 1.09004 * 108.80994 * 214.58568 * 19 18 17 39 39 H 1.08999 * 108.81444 * 332.86303 * 19 18 17 40 40 H 1.00898 * 110.99675 * 191.34092 * 20 19 18 41 41 H 1.09004 * 108.80771 * 78.95902 * 21 20 19 42 42 H 1.09000 * 108.80745 * 197.33879 * 21 20 19 43 43 H 1.08995 * 109.47353 * 180.02562 * 22 12 11 44 44 H 1.09002 * 109.46764 * 300.00451 * 22 12 11 45 45 H 1.08998 * 109.47820 * 300.00157 * 23 9 7 46 46 H 1.09003 * 109.47000 * 60.00234 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4993 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4802 -4.9872 0.0012 12 6 0.6003 -5.0685 -1.2478 13 7 1.4445 -4.9911 -2.4475 14 6 0.8015 -5.6580 -3.5876 15 1 -0.2792 -5.5286 -3.5294 16 6 1.1453 -7.1622 -3.5696 17 6 0.2265 -7.9453 -4.3885 18 6 0.2650 -7.5245 -5.8725 19 6 -0.5382 -6.2624 -6.0316 20 7 0.2901 -5.0393 -5.9401 21 6 1.3152 -5.0670 -4.8730 22 6 -0.3940 -3.9056 -1.2479 23 6 0.3719 -2.5805 -1.2490 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8893 28 1 0.8538 -5.0446 0.8914 29 1 2.1886 -5.8157 0.0016 30 1 0.0550 -6.0123 -1.2471 31 1 2.3595 -5.3779 -2.2713 32 1 1.0993 -7.5233 -2.5422 33 1 2.1589 -7.2980 -3.9469 34 1 0.4952 -8.9989 -4.3124 35 1 -0.7866 -7.8121 -4.0091 36 1 1.2963 -7.3428 -6.1749 37 1 -0.1668 -8.3134 -6.4883 38 1 -1.0323 -6.2803 -7.0031 39 1 -1.3001 -6.2300 -5.2528 40 1 -0.2881 -4.2158 -5.8647 41 1 2.1648 -5.6568 -5.2171 42 1 1.6503 -4.0477 -4.6810 43 1 -1.0212 -3.9638 -2.1374 44 1 -1.0203 -3.9631 -0.3577 45 1 -0.3364 -1.7520 -1.2495 46 1 0.9989 -2.5229 -2.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246093026.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:09 Heat of formation + Delta-G solvation = -38.555282 kcal Electronic energy + Delta-G solvation = -21793.007395 eV Core-core repulsion = 18908.183590 eV Total energy + Delta-G solvation = -2884.823806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.67916 -39.10018 -35.87268 -34.29763 -34.00002 -31.65762 -31.31506 -29.33553 -26.79564 -26.10060 -25.04476 -23.22892 -22.24044 -21.53502 -20.64195 -19.76812 -18.34409 -17.44571 -16.75314 -16.46168 -16.38543 -16.07709 -15.44129 -14.98476 -14.72994 -14.55642 -14.30572 -14.10368 -13.95321 -13.50267 -13.24845 -13.20573 -12.91107 -12.81152 -12.50151 -12.39588 -12.18417 -11.98894 -11.97493 -11.81326 -11.69914 -11.57479 -11.51685 -11.22149 -11.11364 -10.66504 -10.38601 -10.25661 -9.39610 -8.97316 -8.01734 -6.14959 1.40127 1.42075 1.53237 2.46592 3.11066 3.24229 3.45654 3.68286 3.84817 4.02301 4.07944 4.19512 4.23207 4.31989 4.36420 4.48351 4.58836 4.68140 4.72619 4.79646 4.86565 4.91011 4.92242 4.99072 5.02390 5.04429 5.12710 5.16943 5.19795 5.22972 5.31135 5.33196 5.38230 5.41988 5.52391 5.65047 5.71834 5.84959 6.12466 6.19510 6.30443 6.35203 6.46933 6.53050 6.68518 6.99369 7.52272 9.01712 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.027103 B = 0.004803 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.832110 B = 5828.052170 C = 6312.883458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.048 0.952 9 C 0.048 3.952 10 C -0.092 4.092 11 C -0.112 4.112 12 C 0.107 3.893 13 N -0.674 5.674 14 C 0.069 3.931 15 H 0.059 0.941 16 C -0.140 4.140 17 C -0.115 4.115 18 C -0.116 4.116 19 C 0.061 3.939 20 N -0.705 5.705 21 C 0.076 3.924 22 C -0.098 4.098 23 C -0.081 4.081 24 H 0.257 0.743 25 H -0.018 1.018 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.345 0.655 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.023 0.977 40 H 0.343 0.657 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.040 0.960 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 -16.906 -9.617 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.066 0.934 9 C 0.029 3.971 10 C -0.130 4.130 11 C -0.150 4.150 12 C -0.003 4.003 13 N -0.306 5.306 14 C -0.043 4.043 15 H 0.078 0.922 16 C -0.179 4.179 17 C -0.153 4.153 18 C -0.154 4.154 19 C -0.067 4.067 20 N -0.336 5.336 21 C -0.053 4.053 22 C -0.136 4.136 23 C -0.119 4.119 24 H 0.066 0.934 25 H 0.000 1.000 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.164 0.836 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.041 0.959 40 H 0.160 0.840 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.248 -16.398 -10.232 19.330 hybrid contribution -0.370 0.627 1.318 1.506 sum -0.122 -15.770 -8.914 18.116 Atomic orbital electron populations 1.70055 1.07128 1.26599 1.52112 1.25711 0.95595 1.02182 0.95213 0.85654 0.79208 0.80240 0.77447 1.19196 1.20789 1.20793 1.21679 0.92857 0.92597 1.49443 0.93417 1.18595 0.93106 0.92289 0.93087 1.21359 0.97745 0.94194 0.99712 1.21692 0.98566 0.97735 0.96982 1.21290 0.93714 0.95720 0.89588 1.60524 1.05548 1.59900 1.04609 1.21964 0.98188 0.91938 0.92164 0.92241 1.21230 1.00799 0.95492 1.00359 1.20515 0.99489 1.00138 0.95165 1.21410 1.01246 0.96528 0.96225 1.21704 0.94492 0.89778 1.00772 1.60315 1.20357 1.05244 1.47729 1.21676 0.94677 1.01282 0.87699 1.21499 0.96872 0.96424 0.98805 1.21128 0.98133 0.94686 0.97979 0.93406 1.00001 0.94646 0.92469 0.92551 0.90605 0.93678 0.83591 0.92460 0.91266 0.90902 0.92884 0.91326 0.89644 0.90512 0.95882 0.83962 0.91213 0.91979 0.94077 0.94171 0.94130 0.94431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.96 11.32 21.45 0.24 -54.72 16 2 C 0.01 0.62 5.30 84.66 0.45 1.06 16 3 Si 0.95 45.09 29.54 68.60 2.03 47.12 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 7 C -0.53 -30.06 8.56 25.60 0.22 -29.84 16 8 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 9 C 0.05 2.44 2.10 -11.54 -0.02 2.41 16 10 C -0.09 -3.78 4.98 30.59 0.15 -3.63 16 11 C -0.11 -3.61 5.29 30.59 0.16 -3.45 16 12 C 0.11 3.33 2.55 44.92 0.11 3.44 16 13 N -0.67 -19.27 4.46 -471.33 -2.10 -21.38 16 14 C 0.07 1.68 1.95 44.55 0.09 1.76 16 15 H 0.06 1.63 6.16 -2.38 -0.01 1.62 16 16 C -0.14 -2.67 4.59 28.86 0.13 -2.54 16 17 C -0.12 -1.91 5.29 28.85 0.15 -1.76 16 18 C -0.12 -1.89 5.63 30.21 0.17 -1.72 16 19 C 0.06 1.16 6.01 85.26 0.51 1.67 16 20 N -0.71 -16.13 6.89 -517.34 -3.56 -19.69 16 21 C 0.08 1.87 5.74 85.29 0.49 2.36 16 22 C -0.10 -3.82 5.53 30.61 0.17 -3.65 16 23 C -0.08 -3.95 4.82 30.61 0.15 -3.80 16 24 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 25 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 26 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.06 2.32 7.45 -2.39 -0.02 2.30 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.08 1.98 8.12 -2.39 -0.02 1.96 16 30 H 0.05 1.27 7.32 -2.39 -0.02 1.25 16 31 H 0.34 8.99 7.86 -89.70 -0.71 8.28 16 32 H 0.06 1.12 7.52 -2.39 -0.02 1.10 16 33 H 0.07 1.25 7.51 -2.39 -0.02 1.24 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.95 7.52 -2.39 -0.02 0.93 16 36 H 0.07 1.23 7.08 -2.39 -0.02 1.21 16 37 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.02 0.47 6.58 -2.39 -0.02 0.45 16 40 H 0.34 8.01 8.91 -89.70 -0.80 7.21 16 41 H 0.07 1.61 6.58 -2.39 -0.02 1.60 16 42 H 0.06 1.83 7.94 -2.39 -0.02 1.81 16 43 H 0.04 1.53 7.54 -2.39 -0.02 1.51 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.04 2.29 6.07 -2.39 -0.01 2.27 16 46 H 0.04 1.87 7.60 -2.39 -0.02 1.85 16 Total: -1.00 -61.56 332.70 -1.02 -62.58 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -0.55 Total: 23.75 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 2.93 Total: -37.66 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -5.42 Total: -95.78 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -61.56 -1.02 -62.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246093026.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.026 kcal (2) G-P(sol) polarization free energy of solvation -61.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds