Wall clock time and date at job start Mon Mar 30 2020 01:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47021 * 2 1 4 4 H 1.09008 * 109.46880 * 303.71368 * 3 2 1 5 5 C 1.50692 * 109.47128 * 183.71783 * 3 2 1 6 6 H 1.08003 * 119.99864 * 239.99742 * 5 3 2 7 7 C 1.37873 * 120.00379 * 59.71943 * 5 3 2 8 8 N 1.31509 * 120.00193 * 0.27451 * 7 5 3 9 9 Si 1.86807 * 120.00209 * 180.27614 * 7 5 3 10 10 H 1.48503 * 109.47028 * 89.99741 * 9 7 5 11 11 H 1.48494 * 109.47292 * 210.00051 * 9 7 5 12 12 H 1.48503 * 109.46904 * 330.00160 * 9 7 5 13 13 N 1.46902 * 109.47403 * 63.71021 * 3 2 1 14 14 C 1.46893 * 111.00047 * 206.51240 * 13 3 2 15 15 H 1.09005 * 110.66745 * 30.53400 * 14 13 3 16 16 C 1.54921 * 110.74824 * 267.11814 * 14 13 3 17 17 C 1.54353 * 104.20500 * 203.90708 * 16 14 13 18 18 C 1.53550 * 106.47219 * 23.55526 * 17 16 14 19 19 C 1.53963 * 106.93564 * 359.92917 * 18 17 16 20 20 C 1.52737 * 110.06765 * 119.18373 * 18 17 16 21 21 C 1.53113 * 109.29046 * 178.21984 * 20 18 17 22 22 N 1.46851 * 109.48095 * 301.44546 * 21 20 18 23 23 C 1.46851 * 111.26146 * 62.05967 * 22 21 20 24 24 C 1.52755 * 110.05544 * 240.69252 * 18 17 16 25 25 H 1.09007 * 109.47048 * 174.86818 * 1 2 3 26 26 H 1.08993 * 109.47464 * 294.86909 * 1 2 3 27 27 H 1.09001 * 109.47152 * 54.87684 * 1 2 3 28 28 H 1.08998 * 109.47521 * 239.99688 * 2 1 3 29 29 H 1.09004 * 109.46543 * 119.99201 * 2 1 3 30 30 H 0.96998 * 120.00329 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99707 * 82.55448 * 13 3 2 32 32 H 1.09003 * 110.48495 * 322.58528 * 16 14 13 33 33 H 1.08996 * 110.48371 * 85.22550 * 16 14 13 34 34 H 1.09004 * 110.05359 * 264.30437 * 17 16 14 35 35 H 1.08994 * 110.05900 * 142.80729 * 17 16 14 36 36 H 1.09004 * 110.50130 * 217.92238 * 19 18 17 37 37 H 1.08998 * 110.50287 * 95.23233 * 19 18 17 38 38 H 1.09007 * 109.50047 * 298.16277 * 20 18 17 39 39 H 1.08998 * 109.50513 * 58.27487 * 20 18 17 40 40 H 1.08998 * 109.47272 * 181.44278 * 21 20 18 41 41 H 1.08997 * 109.46796 * 61.44759 * 21 20 18 42 42 H 1.00894 * 111.00350 * 297.91065 * 22 21 20 43 43 H 1.09012 * 109.46547 * 177.92857 * 23 22 21 44 44 H 1.08993 * 109.47270 * 57.93583 * 23 22 21 45 45 H 1.09005 * 109.50275 * 301.70998 * 24 18 17 46 46 H 1.08998 * 109.50387 * 61.82607 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6233 1.9752 -0.8549 5 6 3.5441 1.4436 -0.0921 6 1 4.1329 1.8940 0.6933 7 6 4.1688 0.8644 -1.1762 8 7 3.4520 0.3158 -2.1326 9 14 6.0336 0.8589 -1.2866 10 1 6.5641 -0.3682 -0.6400 11 1 6.4451 0.8842 -2.7131 12 1 6.5740 2.0563 -0.5941 13 7 1.6249 2.1087 1.2417 14 6 1.5151 3.5608 1.0488 15 1 1.2303 3.7921 0.0223 16 6 2.8415 4.2665 1.4267 17 6 2.4176 5.7101 1.7714 18 6 0.9354 5.6459 2.1673 19 6 0.5034 4.1727 2.0504 20 6 0.7560 6.1258 3.6061 21 6 -0.7317 6.0966 3.9673 22 7 -1.4784 6.9528 3.0367 23 6 -1.3645 6.4651 1.6562 24 6 0.1023 6.5066 1.2194 25 1 -0.3633 -1.0236 -0.0919 26 1 -0.3634 0.4321 0.9323 27 1 -0.3633 0.5913 -0.8406 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.8915 -0.0920 -2.8950 31 1 2.2569 1.8911 1.9975 32 1 3.2963 3.7854 2.2927 33 1 3.5299 4.2625 0.5817 34 1 2.5447 6.3547 0.9017 35 1 3.0112 6.0850 2.6051 36 1 -0.5115 4.1024 1.6590 37 1 0.5758 3.6758 3.0178 38 1 1.3069 5.4695 4.2800 39 1 1.1333 7.1441 3.6999 40 1 -0.8657 6.4629 4.9851 41 1 -1.1025 5.0741 3.8973 42 1 -1.1764 7.9129 3.1071 43 1 -1.9580 7.0987 0.9970 44 1 -1.7310 5.4401 1.6016 45 1 0.4624 7.5350 1.2503 46 1 0.1907 6.1199 0.2041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246129923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:06 Heat of formation + Delta-G solvation = -28.628905 kcal Electronic energy + Delta-G solvation = -21757.228659 eV Core-core repulsion = 18872.835294 eV Total energy + Delta-G solvation = -2884.393366 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09183 -36.83602 -34.92508 -32.20118 -31.12748 -30.91876 -29.29035 -27.89095 -25.74942 -24.25107 -23.02503 -22.63523 -21.46797 -19.89748 -19.51540 -18.33086 -16.51599 -15.97108 -15.35078 -14.78541 -14.51682 -14.48409 -14.14331 -13.71529 -13.45835 -13.12136 -12.89427 -12.53656 -12.39560 -12.17416 -11.81605 -11.49323 -11.27733 -11.21066 -11.16372 -11.02151 -10.83225 -10.71952 -10.64962 -10.57643 -10.18121 -10.13019 -9.99922 -9.97742 -9.55944 -9.32137 -8.97848 -8.36915 -8.36471 -7.19104 -5.98323 -4.10746 3.25961 3.33475 3.35479 4.27656 4.39396 4.65925 4.74373 4.90248 5.15354 5.18076 5.26934 5.36103 5.45625 5.49929 5.51475 5.64548 5.76322 5.85370 5.88901 5.95176 5.98724 6.00159 6.11422 6.23932 6.25269 6.29747 6.42038 6.46287 6.52393 6.53165 6.64901 6.73396 6.83552 6.89041 6.98665 7.16765 7.19640 7.32296 7.47787 7.62246 7.79751 8.12337 8.18789 8.38208 8.70272 9.02840 9.56662 11.01676 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.024765 B = 0.005162 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.365715 B = 5423.061252 C = 6061.957760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.216 3.784 4 H 0.030 0.970 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.682 5.682 14 C 0.100 3.900 15 H 0.071 0.929 16 C -0.143 4.143 17 C -0.113 4.113 18 C -0.061 4.061 19 C -0.103 4.103 20 C -0.141 4.141 21 C 0.056 3.944 22 N -0.687 5.687 23 C 0.053 3.947 24 C -0.142 4.142 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.089 0.911 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.328 0.672 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.335 0.665 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 11.337 8.477 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.146 4.146 3 C 0.108 3.892 4 H 0.048 0.952 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.310 5.310 14 C -0.012 4.012 15 H 0.089 0.911 16 C -0.182 4.182 17 C -0.151 4.151 18 C -0.061 4.061 19 C -0.141 4.141 20 C -0.180 4.180 21 C -0.074 4.074 22 N -0.314 5.314 23 C -0.076 4.076 24 C -0.181 4.181 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.152 0.848 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.074 0.926 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.571 10.781 8.295 15.568 hybrid contribution 3.210 0.485 -0.472 3.280 sum -4.361 11.266 7.823 14.392 Atomic orbital electron populations 1.21681 0.99047 0.98175 1.00348 1.21511 0.92036 0.99422 1.01600 1.19191 0.92624 0.91033 0.86334 0.95229 1.21893 0.92659 1.37339 1.06013 0.92745 1.24926 0.97748 0.95127 0.95734 1.69874 1.34806 1.37960 1.09798 0.86707 0.86423 0.78348 0.77164 1.20701 1.21271 1.20146 1.60848 1.54719 1.05845 1.09568 1.22365 0.92337 0.88797 0.97659 0.91074 1.23033 0.99553 0.94487 1.01139 1.22185 0.94626 0.98121 1.00196 1.20912 0.95167 0.96117 0.93944 1.22493 0.99129 0.92401 1.00049 1.22303 0.98124 1.00858 0.96735 1.22053 0.91042 0.98596 0.95702 1.60667 1.58711 1.05947 1.06113 1.22119 0.94875 1.01618 0.88988 1.22270 0.96524 0.99293 1.00021 0.95781 0.93467 0.94544 0.89266 0.95189 0.92962 0.85528 0.92323 0.91232 0.92387 0.92696 0.91916 0.91744 0.91464 0.92671 0.91312 0.90529 0.84819 0.91179 0.90310 0.92600 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.72 37.16 0.36 -2.43 16 2 C -0.11 -2.56 5.44 -26.73 -0.15 -2.70 16 3 C 0.22 5.23 1.99 -68.87 -0.14 5.09 16 4 H 0.03 0.80 7.39 -51.92 -0.38 0.42 16 5 C -0.54 -14.15 8.09 -34.45 -0.28 -14.43 16 6 H 0.05 1.42 7.34 -52.48 -0.39 1.03 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.89 -24.86 11.29 55.43 0.63 -24.23 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.86 5.65 -98.81 -0.56 -14.42 16 14 C 0.10 1.78 3.21 -65.67 -0.21 1.57 16 15 H 0.07 1.41 7.40 -51.93 -0.38 1.03 16 16 C -0.14 -2.43 5.58 -25.01 -0.14 -2.57 16 17 C -0.11 -1.57 6.11 -25.74 -0.16 -1.73 16 18 C -0.06 -0.76 0.63 -153.98 -0.10 -0.86 16 19 C -0.10 -1.50 4.41 -25.19 -0.11 -1.61 16 20 C -0.14 -1.54 4.49 -26.81 -0.12 -1.66 16 21 C 0.06 0.58 6.37 -3.79 -0.02 0.56 16 22 N -0.69 -7.15 6.86 -113.73 -0.78 -7.93 16 23 C 0.05 0.58 6.35 -3.80 -0.02 0.56 16 24 C -0.14 -1.64 4.59 -26.80 -0.12 -1.77 16 25 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 26 H 0.05 0.93 7.86 -51.93 -0.41 0.52 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.33 6.69 7.83 -39.29 -0.31 6.38 16 32 H 0.06 1.01 7.76 -51.93 -0.40 0.60 16 33 H 0.07 1.35 8.13 -51.93 -0.42 0.93 16 34 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 35 H 0.05 0.71 7.67 -51.93 -0.40 0.32 16 36 H 0.06 0.93 6.00 -51.93 -0.31 0.62 16 37 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 38 H 0.07 0.76 8.07 -51.92 -0.42 0.34 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.88 7.37 -51.93 -0.38 0.50 16 42 H 0.34 3.06 8.85 -39.29 -0.35 2.71 16 43 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 44 H 0.08 0.95 6.34 -51.93 -0.33 0.62 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -26.44 339.81 -10.43 -36.87 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -8.51 Total: 8.89 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -1.30 Total: -20.27 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.71 Total: -46.58 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.44 -10.43 -36.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246129923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.242 kcal (2) G-P(sol) polarization free energy of solvation -26.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds