Wall clock time and date at job start Mon Mar 30 2020 01:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47021 * 2 1 4 4 H 1.09008 * 109.46880 * 303.71368 * 3 2 1 5 5 C 1.50692 * 109.47128 * 183.71783 * 3 2 1 6 6 H 1.08003 * 119.99864 * 239.99742 * 5 3 2 7 7 C 1.37873 * 120.00379 * 59.71943 * 5 3 2 8 8 N 1.31509 * 120.00193 * 0.27451 * 7 5 3 9 9 Si 1.86807 * 120.00209 * 180.27614 * 7 5 3 10 10 H 1.48503 * 109.47028 * 89.99741 * 9 7 5 11 11 H 1.48494 * 109.47292 * 210.00051 * 9 7 5 12 12 H 1.48503 * 109.46904 * 330.00160 * 9 7 5 13 13 N 1.46902 * 109.47403 * 63.71021 * 3 2 1 14 14 C 1.46893 * 111.00047 * 206.51240 * 13 3 2 15 15 H 1.09005 * 110.66745 * 30.53400 * 14 13 3 16 16 C 1.54921 * 110.74824 * 267.11814 * 14 13 3 17 17 C 1.54353 * 104.20500 * 203.90708 * 16 14 13 18 18 C 1.53550 * 106.47219 * 23.55526 * 17 16 14 19 19 C 1.53963 * 106.93564 * 359.92917 * 18 17 16 20 20 C 1.52737 * 110.06765 * 119.18373 * 18 17 16 21 21 C 1.53113 * 109.29046 * 178.21984 * 20 18 17 22 22 N 1.46851 * 109.48095 * 301.44546 * 21 20 18 23 23 C 1.46851 * 111.26146 * 62.05967 * 22 21 20 24 24 C 1.52755 * 110.05544 * 240.69252 * 18 17 16 25 25 H 1.09007 * 109.47048 * 174.86818 * 1 2 3 26 26 H 1.08993 * 109.47464 * 294.86909 * 1 2 3 27 27 H 1.09001 * 109.47152 * 54.87684 * 1 2 3 28 28 H 1.08998 * 109.47521 * 239.99688 * 2 1 3 29 29 H 1.09004 * 109.46543 * 119.99201 * 2 1 3 30 30 H 0.96998 * 120.00329 * 180.02562 * 8 7 5 31 31 H 1.00900 * 110.99707 * 82.55448 * 13 3 2 32 32 H 1.09003 * 110.48495 * 322.58528 * 16 14 13 33 33 H 1.08996 * 110.48371 * 85.22550 * 16 14 13 34 34 H 1.09004 * 110.05359 * 264.30437 * 17 16 14 35 35 H 1.08994 * 110.05900 * 142.80729 * 17 16 14 36 36 H 1.09004 * 110.50130 * 217.92238 * 19 18 17 37 37 H 1.08998 * 110.50287 * 95.23233 * 19 18 17 38 38 H 1.09007 * 109.50047 * 298.16277 * 20 18 17 39 39 H 1.08998 * 109.50513 * 58.27487 * 20 18 17 40 40 H 1.08998 * 109.47272 * 181.44278 * 21 20 18 41 41 H 1.08997 * 109.46796 * 61.44759 * 21 20 18 42 42 H 1.00894 * 111.00350 * 297.91065 * 22 21 20 43 43 H 1.09012 * 109.46547 * 177.92857 * 23 22 21 44 44 H 1.08993 * 109.47270 * 57.93583 * 23 22 21 45 45 H 1.09005 * 109.50275 * 301.70998 * 24 18 17 46 46 H 1.08998 * 109.50387 * 61.82607 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6233 1.9752 -0.8549 5 6 3.5441 1.4436 -0.0921 6 1 4.1329 1.8940 0.6933 7 6 4.1688 0.8644 -1.1762 8 7 3.4520 0.3158 -2.1326 9 14 6.0336 0.8589 -1.2866 10 1 6.5641 -0.3682 -0.6400 11 1 6.4451 0.8842 -2.7131 12 1 6.5740 2.0563 -0.5941 13 7 1.6249 2.1087 1.2417 14 6 1.5151 3.5608 1.0488 15 1 1.2303 3.7921 0.0223 16 6 2.8415 4.2665 1.4267 17 6 2.4176 5.7101 1.7714 18 6 0.9354 5.6459 2.1673 19 6 0.5034 4.1727 2.0504 20 6 0.7560 6.1258 3.6061 21 6 -0.7317 6.0966 3.9673 22 7 -1.4784 6.9528 3.0367 23 6 -1.3645 6.4651 1.6562 24 6 0.1023 6.5066 1.2194 25 1 -0.3633 -1.0236 -0.0919 26 1 -0.3634 0.4321 0.9323 27 1 -0.3633 0.5913 -0.8406 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.8915 -0.0920 -2.8950 31 1 2.2569 1.8911 1.9975 32 1 3.2963 3.7854 2.2927 33 1 3.5299 4.2625 0.5817 34 1 2.5447 6.3547 0.9017 35 1 3.0112 6.0850 2.6051 36 1 -0.5115 4.1024 1.6590 37 1 0.5758 3.6758 3.0178 38 1 1.3069 5.4695 4.2800 39 1 1.1333 7.1441 3.6999 40 1 -0.8657 6.4629 4.9851 41 1 -1.1025 5.0741 3.8973 42 1 -1.1764 7.9129 3.1071 43 1 -1.9580 7.0987 0.9970 44 1 -1.7310 5.4401 1.6016 45 1 0.4624 7.5350 1.2503 46 1 0.1907 6.1199 0.2041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246129923.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:05 Heat of formation + Delta-G solvation = -44.740449 kcal Electronic energy + Delta-G solvation = -21757.927308 eV Core-core repulsion = 18872.835294 eV Total energy + Delta-G solvation = -2885.092015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17579 -38.30849 -36.41686 -34.03537 -32.76568 -31.79623 -30.56737 -29.40727 -27.53574 -25.46681 -24.41185 -23.90817 -22.56477 -21.48875 -21.23588 -19.39009 -18.52265 -17.05450 -16.95029 -16.30392 -15.73187 -15.63990 -15.24242 -15.11573 -14.81638 -14.62724 -14.18321 -13.98462 -13.87182 -13.48295 -13.14379 -13.09796 -13.05991 -12.67495 -12.57659 -12.43882 -12.24191 -12.10779 -12.02376 -11.94801 -11.78478 -11.54886 -11.48435 -11.32104 -11.00294 -10.96795 -10.85041 -10.44596 -9.20843 -8.95650 -8.03548 -6.25043 1.35953 1.37890 1.45939 2.39361 3.15640 3.44736 3.51592 3.69712 3.79978 3.97254 4.23633 4.28288 4.34418 4.41631 4.48978 4.51821 4.58450 4.64963 4.70291 4.76666 4.83012 4.91104 4.93526 4.95339 4.99564 5.06072 5.08929 5.14935 5.19367 5.22265 5.23052 5.36257 5.39748 5.42250 5.52738 5.54894 5.61910 5.65858 5.79215 6.13371 6.15056 6.23032 6.45447 6.59687 6.87079 7.05809 7.46109 8.92557 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.024765 B = 0.005162 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.365715 B = 5423.061252 C = 6061.957760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.225 3.775 4 H -0.007 1.007 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.674 5.674 14 C 0.095 3.905 15 H 0.044 0.956 16 C -0.139 4.139 17 C -0.106 4.106 18 C -0.055 4.055 19 C -0.088 4.088 20 C -0.134 4.134 21 C 0.058 3.942 22 N -0.688 5.688 23 C 0.058 3.942 24 C -0.138 4.138 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.329 0.671 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.346 0.654 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.479 12.773 10.222 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.011 0.989 5 C -0.587 4.587 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.772 3.228 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.302 5.302 14 C -0.016 4.016 15 H 0.063 0.937 16 C -0.178 4.178 17 C -0.144 4.144 18 C -0.056 4.056 19 C -0.126 4.126 20 C -0.173 4.173 21 C -0.071 4.071 22 N -0.317 5.317 23 C -0.072 4.072 24 C -0.177 4.177 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.146 0.854 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.164 0.836 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.775 12.236 10.056 17.643 hybrid contribution 3.258 0.047 -1.029 3.417 sum -4.516 12.283 9.027 15.898 Atomic orbital electron populations 1.21535 0.96488 0.99409 1.00553 1.21379 0.94320 0.98617 0.99941 1.18935 0.91538 0.91246 0.86666 0.98887 1.22169 0.93837 1.36813 1.05875 0.92930 1.25638 1.01795 0.95041 0.95592 1.70008 1.36311 1.38719 1.10242 0.85755 0.81589 0.78406 0.77048 1.20180 1.21145 1.19757 1.60814 1.54165 1.07346 1.07827 1.22410 0.94207 0.87581 0.97381 0.93738 1.22911 0.98210 0.96904 0.99771 1.22146 0.95752 0.95625 1.00882 1.20863 0.94190 0.94769 0.95762 1.22359 0.97856 0.93710 0.98711 1.22249 0.98658 1.01520 0.94910 1.22040 0.90429 0.98106 0.96572 1.60645 1.58826 1.06611 1.05575 1.22048 0.94281 1.01153 0.89684 1.22237 0.97052 0.99657 0.98800 0.93822 0.92380 0.95296 0.92230 0.95381 0.93059 0.85384 0.92361 0.94348 0.92307 0.91043 0.92085 0.91531 0.91463 0.91253 0.89621 0.91786 0.83615 0.90019 0.91744 0.91192 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.72 71.98 0.70 -4.33 16 2 C -0.10 -5.05 5.44 30.60 0.17 -4.89 16 3 C 0.22 11.24 1.99 44.17 0.09 11.32 16 4 H -0.01 -0.39 7.39 -2.38 -0.02 -0.41 16 5 C -0.55 -29.40 8.09 25.60 0.21 -29.19 16 6 H 0.05 2.78 7.34 -2.91 -0.02 2.76 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -52.62 11.29 21.44 0.24 -52.38 16 9 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.67 -27.84 5.65 -466.54 -2.63 -30.47 16 14 C 0.10 3.47 3.21 46.24 0.15 3.62 16 15 H 0.04 1.86 7.40 -2.38 -0.02 1.84 16 16 C -0.14 -4.75 5.58 31.71 0.18 -4.57 16 17 C -0.11 -2.79 6.11 31.24 0.19 -2.60 16 18 C -0.06 -1.29 0.63 -51.84 -0.03 -1.32 16 19 C -0.09 -2.51 4.41 31.59 0.14 -2.37 16 20 C -0.13 -2.52 4.49 30.54 0.14 -2.38 16 21 C 0.06 1.04 6.37 86.35 0.55 1.59 16 22 N -0.69 -12.40 6.86 -513.72 -3.52 -15.93 16 23 C 0.06 1.15 6.35 86.35 0.55 1.70 16 24 C -0.14 -2.96 4.59 30.55 0.14 -2.82 16 25 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.06 2.24 7.86 -2.39 -0.02 2.22 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 3.27 5.97 -2.39 -0.01 3.26 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.33 13.49 7.83 -89.69 -0.70 12.79 16 32 H 0.06 1.98 7.76 -2.39 -0.02 1.96 16 33 H 0.04 1.53 8.13 -2.39 -0.02 1.51 16 34 H 0.06 1.55 7.67 -2.39 -0.02 1.53 16 35 H 0.07 1.67 7.67 -2.39 -0.02 1.65 16 36 H 0.06 1.77 6.00 -2.38 -0.01 1.76 16 37 H 0.07 1.89 7.75 -2.39 -0.02 1.87 16 38 H 0.07 1.30 8.07 -2.38 -0.02 1.28 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.33 7.37 -2.39 -0.02 1.31 16 42 H 0.35 5.14 8.85 -89.70 -0.79 4.34 16 43 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.06 1.47 6.34 -2.39 -0.02 1.46 16 45 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -57.54 339.81 -0.83 -58.37 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.55 Total: 29.53 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 3.61 Total: -34.77 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -5.92 Total: -98.78 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -57.54 -0.83 -58.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246129923.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.631 kcal (2) G-P(sol) polarization free energy of solvation -57.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds