Wall clock time and date at job start Mon Mar 30 2020 01:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46994 * 2 1 4 4 H 1.09003 * 109.47414 * 304.17061 * 3 2 1 5 5 C 1.50700 * 109.47082 * 184.17205 * 3 2 1 6 6 H 1.08006 * 119.99802 * 240.00077 * 5 3 2 7 7 C 1.37874 * 120.00370 * 59.99997 * 5 3 2 8 8 N 1.31516 * 119.99512 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00536 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46976 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47032 * 119.99661 * 9 7 5 12 12 H 1.48496 * 109.47576 * 240.00210 * 9 7 5 13 13 N 1.46900 * 109.47117 * 64.17149 * 3 2 1 14 14 C 1.46901 * 111.00186 * 206.08127 * 13 3 2 15 15 H 1.08998 * 110.66344 * 327.77637 * 14 13 3 16 16 C 1.54917 * 110.74626 * 91.18924 * 14 13 3 17 17 C 1.54352 * 104.19858 * 156.09433 * 16 14 13 18 18 C 1.53554 * 106.47850 * 336.43490 * 17 16 14 19 19 C 1.53951 * 106.92724 * 0.08412 * 18 17 16 20 20 C 1.52745 * 110.05555 * 119.31856 * 18 17 16 21 21 C 1.53104 * 109.28487 * 178.20373 * 20 18 17 22 22 N 1.46848 * 109.49183 * 301.45598 * 21 20 18 23 23 C 1.46846 * 111.26648 * 62.06267 * 22 21 20 24 24 C 1.52752 * 110.05835 * 240.84566 * 18 17 16 25 25 H 1.09003 * 109.46995 * 174.77148 * 1 2 3 26 26 H 1.08992 * 109.47095 * 294.76615 * 1 2 3 27 27 H 1.08999 * 109.47285 * 54.77464 * 1 2 3 28 28 H 1.09003 * 109.47091 * 240.00032 * 2 1 3 29 29 H 1.08998 * 109.47084 * 120.00160 * 2 1 3 30 30 H 0.97004 * 120.00100 * 179.97438 * 8 7 5 31 31 H 1.00904 * 111.00043 * 82.12819 * 13 3 2 32 32 H 1.08993 * 110.48955 * 274.77602 * 16 14 13 33 33 H 1.08997 * 110.48626 * 37.41775 * 16 14 13 34 34 H 1.09002 * 110.05683 * 95.69087 * 17 16 14 35 35 H 1.09006 * 110.05825 * 217.12391 * 17 16 14 36 36 H 1.09000 * 110.50504 * 264.75094 * 19 18 17 37 37 H 1.09008 * 110.49911 * 142.06669 * 19 18 17 38 38 H 1.08992 * 109.50469 * 298.15165 * 20 18 17 39 39 H 1.09008 * 109.50007 * 58.26517 * 20 18 17 40 40 H 1.08999 * 109.47055 * 181.44978 * 21 20 18 41 41 H 1.09002 * 109.46979 * 61.45929 * 21 20 18 42 42 H 1.00904 * 110.99894 * 297.91697 * 22 21 20 43 43 H 1.08996 * 109.47396 * 177.93496 * 23 22 21 44 44 H 1.09001 * 109.46815 * 57.94327 * 23 22 21 45 45 H 1.08994 * 109.50533 * 301.74808 * 24 18 17 46 46 H 1.09009 * 109.49967 * 61.86085 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6169 1.9775 -0.8503 5 6 3.5435 1.4437 -0.1034 6 1 4.1381 1.8921 0.6789 7 6 4.1599 0.8726 -1.1964 8 7 3.4357 0.3271 -2.1491 9 14 6.0234 0.8748 -1.3249 10 1 6.6010 1.5455 -0.1325 11 1 6.5165 -0.5243 -1.3926 12 1 6.4342 1.6043 -2.5513 13 7 1.6343 2.1053 1.2466 14 6 1.5330 3.5590 1.0612 15 1 2.2612 3.9048 0.3276 16 6 0.0957 3.9602 0.6449 17 6 -0.0269 5.4356 1.0815 18 6 1.0026 5.6455 2.2013 19 6 1.7187 4.2988 2.4101 20 6 2.0153 6.7120 1.7887 21 6 3.0055 6.9391 2.9342 22 7 2.2748 7.3540 4.1385 23 6 1.3419 6.3101 4.5816 24 6 0.2969 6.0622 3.4904 25 1 -0.3633 -1.0234 -0.0937 26 1 -0.3633 0.4305 0.9331 27 1 -0.3634 0.5927 -0.8395 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8693 -0.0745 -2.9184 31 1 2.2681 1.8800 1.9988 32 1 -0.0281 3.8702 -0.4342 33 1 -0.6380 3.3459 1.1666 34 1 0.1952 6.0937 0.2414 35 1 -1.0319 5.6328 1.4547 36 1 1.2509 3.7391 3.2200 37 1 2.7773 4.4572 2.6160 38 1 2.5545 6.3783 0.9023 39 1 1.4935 7.6435 1.5687 40 1 3.7140 7.7181 2.6528 41 1 3.5446 6.0138 3.1372 42 1 1.7938 8.2279 3.9865 43 1 0.8433 6.6325 5.4956 44 1 1.8921 5.3889 4.7736 45 1 -0.2705 6.9762 3.3155 46 1 -0.3795 5.2684 3.8079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246129926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:08 Heat of formation + Delta-G solvation = -29.199761 kcal Electronic energy + Delta-G solvation = -21750.753674 eV Core-core repulsion = 18866.335554 eV Total energy + Delta-G solvation = -2884.418120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10534 -36.76830 -34.96220 -32.20214 -31.08742 -30.91444 -29.55809 -27.78536 -25.77249 -24.28730 -23.03093 -22.68804 -21.60399 -19.70571 -19.29068 -18.40441 -16.52049 -15.97785 -15.45619 -14.77540 -14.57994 -14.45920 -14.15502 -13.74030 -13.41183 -13.31697 -13.04222 -12.68476 -12.43422 -12.18120 -11.60664 -11.40536 -11.33033 -11.24579 -11.15071 -11.00030 -10.89854 -10.75587 -10.69599 -10.46595 -10.18402 -10.07494 -10.00445 -9.95696 -9.54719 -9.35959 -9.00487 -8.38323 -8.36451 -7.21760 -5.98979 -4.11898 3.25288 3.34038 3.37089 4.26918 4.39497 4.64634 4.72224 4.84669 5.14204 5.16589 5.26646 5.33865 5.40521 5.44428 5.49218 5.65876 5.73822 5.84273 5.86217 5.92994 5.97881 6.04882 6.06412 6.12752 6.26084 6.34113 6.41226 6.45008 6.49117 6.52196 6.66165 6.72150 6.74759 6.91108 6.97981 7.16187 7.19667 7.31784 7.49269 7.63087 7.79372 8.11937 8.19066 8.38257 8.71360 9.02471 9.55898 11.00946 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.005591 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.100138 B = 5006.529146 C = 5884.550158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.031 0.969 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.682 5.682 14 C 0.092 3.908 15 H 0.051 0.949 16 C -0.109 4.109 17 C -0.113 4.113 18 C -0.056 4.056 19 C -0.116 4.116 20 C -0.143 4.143 21 C 0.053 3.947 22 N -0.686 5.686 23 C 0.055 3.945 24 C -0.141 4.141 25 H 0.023 0.977 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.089 0.911 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.327 0.673 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.335 0.665 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.691 11.469 8.887 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.049 0.951 5 C -0.582 4.582 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.311 5.311 14 C -0.019 4.019 15 H 0.069 0.931 16 C -0.148 4.148 17 C -0.151 4.151 18 C -0.057 4.057 19 C -0.154 4.154 20 C -0.182 4.182 21 C -0.076 4.076 22 N -0.314 5.314 23 C -0.074 4.074 24 C -0.181 4.181 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.143 0.857 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.152 0.848 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.832 11.060 9.045 15.432 hybrid contribution 1.283 0.251 -1.074 1.692 sum -4.549 11.311 7.972 14.566 Atomic orbital electron populations 1.21677 0.99049 0.98142 1.00316 1.21493 0.92041 0.99378 1.01560 1.19165 0.92506 0.91073 0.86480 0.95130 1.21921 0.92789 1.37731 1.05751 0.92912 1.24932 0.97868 0.95054 0.95693 1.69893 1.34732 1.38182 1.09544 0.86631 0.86246 0.77754 0.77909 1.19933 1.20956 1.21079 1.60927 1.54847 1.05721 1.09641 1.22307 0.95271 0.89445 0.94834 0.93109 1.22343 0.98189 0.93925 1.00307 1.22208 0.97880 0.97818 0.97233 1.20827 0.95039 0.95272 0.94544 1.22664 0.99585 0.94437 0.98680 1.22282 0.97891 0.98344 0.99732 1.22115 0.95859 1.01501 0.88154 1.60665 1.30806 1.05735 1.34223 1.22053 0.92885 0.95853 0.96637 1.22313 0.98497 1.01276 0.95968 0.95800 0.93504 0.94542 0.89307 0.95183 0.92989 0.85676 0.92546 0.91385 0.92374 0.92424 0.91277 0.92047 0.91033 0.92483 0.91108 0.90411 0.84782 0.91244 0.90638 0.92564 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 9.73 37.16 0.36 -2.43 16 2 C -0.11 -2.55 5.45 -26.73 -0.15 -2.70 16 3 C 0.22 5.28 1.85 -68.87 -0.13 5.15 16 4 H 0.03 0.84 7.84 -51.93 -0.41 0.43 16 5 C -0.54 -14.53 8.37 -34.44 -0.29 -14.81 16 6 H 0.05 1.41 7.73 -52.48 -0.41 1.01 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.02 11.30 55.43 0.63 -24.39 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.68 -14.01 5.65 -98.82 -0.56 -14.57 16 14 C 0.09 1.67 2.98 -65.67 -0.20 1.48 16 15 H 0.05 1.07 7.74 -51.93 -0.40 0.67 16 16 C -0.11 -1.79 6.52 -25.01 -0.16 -1.96 16 17 C -0.11 -1.52 6.11 -25.74 -0.16 -1.67 16 18 C -0.06 -0.70 0.63 -153.98 -0.10 -0.80 16 19 C -0.12 -1.71 4.12 -25.20 -0.10 -1.81 16 20 C -0.14 -1.70 4.59 -26.81 -0.12 -1.82 16 21 C 0.05 0.60 6.35 -3.80 -0.02 0.58 16 22 N -0.69 -7.28 6.86 -113.74 -0.78 -8.06 16 23 C 0.06 0.58 6.37 -3.80 -0.02 0.55 16 24 C -0.14 -1.52 4.49 -26.80 -0.12 -1.64 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.93 7.88 -51.93 -0.41 0.52 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.33 6.72 8.10 -39.29 -0.32 6.40 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 35 H 0.06 0.71 7.67 -51.93 -0.40 0.31 16 36 H 0.07 1.02 7.75 -51.93 -0.40 0.62 16 37 H 0.06 0.93 6.01 -51.92 -0.31 0.62 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.99 6.34 -51.93 -0.33 0.66 16 42 H 0.34 3.10 8.85 -39.29 -0.35 2.75 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.87 7.38 -51.93 -0.38 0.49 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.76 8.07 -51.92 -0.42 0.34 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -26.97 342.24 -10.48 -37.45 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -8.60 Total: 8.46 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -1.30 Total: -20.15 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.71 Total: -47.03 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -26.97 -10.48 -37.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246129926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.249 kcal (2) G-P(sol) polarization free energy of solvation -26.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds