Wall clock time and date at job start Mon Mar 30 2020 01:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46994 * 2 1 4 4 H 1.09003 * 109.47414 * 304.17061 * 3 2 1 5 5 C 1.50700 * 109.47082 * 184.17205 * 3 2 1 6 6 H 1.08006 * 119.99802 * 240.00077 * 5 3 2 7 7 C 1.37874 * 120.00370 * 59.99997 * 5 3 2 8 8 N 1.31516 * 119.99512 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00536 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46976 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47032 * 119.99661 * 9 7 5 12 12 H 1.48496 * 109.47576 * 240.00210 * 9 7 5 13 13 N 1.46900 * 109.47117 * 64.17149 * 3 2 1 14 14 C 1.46901 * 111.00186 * 206.08127 * 13 3 2 15 15 H 1.08998 * 110.66344 * 327.77637 * 14 13 3 16 16 C 1.54917 * 110.74626 * 91.18924 * 14 13 3 17 17 C 1.54352 * 104.19858 * 156.09433 * 16 14 13 18 18 C 1.53554 * 106.47850 * 336.43490 * 17 16 14 19 19 C 1.53951 * 106.92724 * 0.08412 * 18 17 16 20 20 C 1.52745 * 110.05555 * 119.31856 * 18 17 16 21 21 C 1.53104 * 109.28487 * 178.20373 * 20 18 17 22 22 N 1.46848 * 109.49183 * 301.45598 * 21 20 18 23 23 C 1.46846 * 111.26648 * 62.06267 * 22 21 20 24 24 C 1.52752 * 110.05835 * 240.84566 * 18 17 16 25 25 H 1.09003 * 109.46995 * 174.77148 * 1 2 3 26 26 H 1.08992 * 109.47095 * 294.76615 * 1 2 3 27 27 H 1.08999 * 109.47285 * 54.77464 * 1 2 3 28 28 H 1.09003 * 109.47091 * 240.00032 * 2 1 3 29 29 H 1.08998 * 109.47084 * 120.00160 * 2 1 3 30 30 H 0.97004 * 120.00100 * 179.97438 * 8 7 5 31 31 H 1.00904 * 111.00043 * 82.12819 * 13 3 2 32 32 H 1.08993 * 110.48955 * 274.77602 * 16 14 13 33 33 H 1.08997 * 110.48626 * 37.41775 * 16 14 13 34 34 H 1.09002 * 110.05683 * 95.69087 * 17 16 14 35 35 H 1.09006 * 110.05825 * 217.12391 * 17 16 14 36 36 H 1.09000 * 110.50504 * 264.75094 * 19 18 17 37 37 H 1.09008 * 110.49911 * 142.06669 * 19 18 17 38 38 H 1.08992 * 109.50469 * 298.15165 * 20 18 17 39 39 H 1.09008 * 109.50007 * 58.26517 * 20 18 17 40 40 H 1.08999 * 109.47055 * 181.44978 * 21 20 18 41 41 H 1.09002 * 109.46979 * 61.45929 * 21 20 18 42 42 H 1.00904 * 110.99894 * 297.91697 * 22 21 20 43 43 H 1.08996 * 109.47396 * 177.93496 * 23 22 21 44 44 H 1.09001 * 109.46815 * 57.94327 * 23 22 21 45 45 H 1.08994 * 109.50533 * 301.74808 * 24 18 17 46 46 H 1.09009 * 109.49967 * 61.86085 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6169 1.9775 -0.8503 5 6 3.5435 1.4437 -0.1034 6 1 4.1381 1.8921 0.6789 7 6 4.1599 0.8726 -1.1964 8 7 3.4357 0.3271 -2.1491 9 14 6.0234 0.8748 -1.3249 10 1 6.6010 1.5455 -0.1325 11 1 6.5165 -0.5243 -1.3926 12 1 6.4342 1.6043 -2.5513 13 7 1.6343 2.1053 1.2466 14 6 1.5330 3.5590 1.0612 15 1 2.2612 3.9048 0.3276 16 6 0.0957 3.9602 0.6449 17 6 -0.0269 5.4356 1.0815 18 6 1.0026 5.6455 2.2013 19 6 1.7187 4.2988 2.4101 20 6 2.0153 6.7120 1.7887 21 6 3.0055 6.9391 2.9342 22 7 2.2748 7.3540 4.1385 23 6 1.3419 6.3101 4.5816 24 6 0.2969 6.0622 3.4904 25 1 -0.3633 -1.0234 -0.0937 26 1 -0.3633 0.4305 0.9331 27 1 -0.3634 0.5927 -0.8395 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8693 -0.0745 -2.9184 31 1 2.2681 1.8800 1.9988 32 1 -0.0281 3.8702 -0.4342 33 1 -0.6380 3.3459 1.1666 34 1 0.1952 6.0937 0.2414 35 1 -1.0319 5.6328 1.4547 36 1 1.2509 3.7391 3.2200 37 1 2.7773 4.4572 2.6160 38 1 2.5545 6.3783 0.9023 39 1 1.4935 7.6435 1.5687 40 1 3.7140 7.7181 2.6528 41 1 3.5446 6.0138 3.1372 42 1 1.7938 8.2279 3.9865 43 1 0.8433 6.6325 5.4956 44 1 1.8921 5.3889 4.7736 45 1 -0.2705 6.9762 3.3155 46 1 -0.3795 5.2684 3.8079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001246129926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:08 Heat of formation + Delta-G solvation = -45.852701 kcal Electronic energy + Delta-G solvation = -21751.475799 eV Core-core repulsion = 18866.335554 eV Total energy + Delta-G solvation = -2885.140245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.18345 -38.26047 -36.45576 -34.06330 -32.74743 -31.81658 -30.80810 -29.30821 -27.56427 -25.47000 -24.53654 -23.92676 -22.67641 -21.48469 -20.79934 -19.52017 -18.57213 -17.01552 -16.95912 -16.48798 -15.73730 -15.63910 -15.29194 -15.12587 -14.93070 -14.64762 -14.32298 -14.15940 -13.94525 -13.31036 -13.20020 -13.10699 -12.98085 -12.72838 -12.58914 -12.35156 -12.19904 -12.15374 -12.08678 -11.84218 -11.72633 -11.53295 -11.46964 -11.33218 -11.10496 -10.99777 -10.85649 -10.47743 -9.23358 -9.03317 -8.07040 -6.29527 1.34107 1.36892 1.46782 2.37703 3.12155 3.43517 3.54132 3.65765 3.69574 3.92063 4.24747 4.25554 4.35549 4.40014 4.48831 4.49630 4.60228 4.63250 4.70153 4.75182 4.78956 4.90442 4.92433 4.93147 5.01215 5.05638 5.07972 5.09787 5.17819 5.18783 5.21948 5.35164 5.39659 5.41542 5.50084 5.52949 5.56100 5.66438 5.78553 6.11070 6.12333 6.20835 6.42724 6.58077 6.85448 7.03172 7.42298 8.89390 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.005591 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.100138 B = 5006.529146 C = 5884.550158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.226 3.774 4 H -0.006 1.006 5 C -0.557 4.557 6 H 0.047 0.953 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.278 1.278 12 H -0.282 1.282 13 N -0.672 5.672 14 C 0.087 3.913 15 H 0.014 0.986 16 C -0.105 4.105 17 C -0.106 4.106 18 C -0.052 4.052 19 C -0.104 4.104 20 C -0.139 4.139 21 C 0.057 3.943 22 N -0.688 5.688 23 C 0.057 3.943 24 C -0.134 4.134 25 H 0.043 0.957 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.327 0.673 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.347 0.653 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 12.840 10.502 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.012 0.988 5 C -0.596 4.596 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.208 1.208 13 N -0.301 5.301 14 C -0.023 4.023 15 H 0.032 0.968 16 C -0.144 4.144 17 C -0.144 4.144 18 C -0.053 4.053 19 C -0.141 4.141 20 C -0.179 4.179 21 C -0.072 4.072 22 N -0.317 5.317 23 C -0.073 4.073 24 C -0.173 4.173 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.054 0.946 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.165 0.835 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.408 12.447 10.672 17.603 hybrid contribution 1.457 -0.174 -1.591 2.165 sum -4.951 12.272 9.081 16.049 Atomic orbital electron populations 1.21526 0.96382 0.99412 1.00545 1.21360 0.94413 0.98474 0.99911 1.18894 0.91256 0.91333 0.86829 0.98793 1.22204 0.94112 1.37556 1.05735 0.93448 1.25663 1.02108 0.94820 0.95454 1.70020 1.36352 1.38735 1.09951 0.85657 0.81158 0.77852 0.77868 1.19513 1.20390 1.20778 1.60894 1.54106 1.07205 1.07851 1.22357 0.95647 0.88137 0.96199 0.96789 1.22273 0.96669 0.96406 0.99014 1.22174 0.99357 0.95209 0.97639 1.20799 0.94874 0.94059 0.95522 1.22558 0.99745 0.95453 0.96382 1.22246 0.97815 0.98703 0.99108 1.22027 0.95887 1.01039 0.88271 1.60636 1.31152 1.06321 1.33547 1.22056 0.92612 0.95351 0.97260 1.22253 0.98416 1.02041 0.94553 0.93782 0.92352 0.95319 0.92287 0.95345 0.92922 0.85676 0.94637 0.91334 0.92218 0.90299 0.90780 0.92673 0.93158 0.90788 0.90160 0.92210 0.83480 0.89421 0.92045 0.90888 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.73 71.98 0.70 -4.29 16 2 C -0.10 -5.04 5.45 30.59 0.17 -4.88 16 3 C 0.23 11.45 1.85 44.17 0.08 11.54 16 4 H -0.01 -0.34 7.84 -2.39 -0.02 -0.36 16 5 C -0.56 -30.69 8.37 25.60 0.21 -30.47 16 6 H 0.05 2.60 7.73 -2.91 -0.02 2.58 16 7 C 0.02 1.08 5.29 84.65 0.45 1.53 16 8 N -0.91 -52.88 11.30 21.45 0.24 -52.64 16 9 Si 0.95 44.00 29.54 68.60 2.03 46.02 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 N -0.67 -28.22 5.65 -466.55 -2.64 -30.85 16 14 C 0.09 3.25 2.98 46.24 0.14 3.38 16 15 H 0.01 0.63 7.74 -2.39 -0.02 0.61 16 16 C -0.11 -3.47 6.52 31.71 0.21 -3.26 16 17 C -0.11 -2.66 6.11 31.24 0.19 -2.47 16 18 C -0.05 -1.21 0.63 -51.84 -0.03 -1.24 16 19 C -0.10 -3.02 4.12 31.59 0.13 -2.89 16 20 C -0.14 -3.11 4.59 30.54 0.14 -2.97 16 21 C 0.06 1.22 6.35 86.35 0.55 1.76 16 22 N -0.69 -12.80 6.86 -513.75 -3.52 -16.33 16 23 C 0.06 1.03 6.37 86.35 0.55 1.58 16 24 C -0.13 -2.45 4.49 30.55 0.14 -2.31 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.06 2.25 7.88 -2.39 -0.02 2.23 16 27 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 3.26 5.97 -2.39 -0.01 3.25 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.33 13.64 8.10 -89.69 -0.73 12.91 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.06 1.49 7.67 -2.39 -0.02 1.47 16 35 H 0.08 1.69 7.67 -2.38 -0.02 1.67 16 36 H 0.07 2.10 7.75 -2.39 -0.02 2.08 16 37 H 0.05 1.68 6.01 -2.38 -0.01 1.66 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 1.48 6.34 -2.39 -0.02 1.47 16 42 H 0.35 5.24 8.85 -89.69 -0.79 4.45 16 43 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.30 7.38 -2.39 -0.02 1.28 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.07 1.32 8.07 -2.38 -0.02 1.30 16 Total: -1.00 -59.10 342.24 -0.85 -59.95 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -0.58 Total: 28.84 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.62 Total: -34.99 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -5.92 Total: -99.82 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -59.10 -0.85 -59.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246129926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.097 kcal (2) G-P(sol) polarization free energy of solvation -59.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds