Wall clock time and date at job start Mon Mar 30 2020 00:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99438 * 2 1 4 4 H 1.48504 * 109.46552 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47359 * 299.99710 * 3 2 1 6 6 H 1.48496 * 109.47246 * 59.99913 * 3 2 1 7 7 C 1.37872 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99578 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00327 * 359.73185 * 7 2 1 10 10 C 1.53004 * 109.46880 * 300.27226 * 9 7 2 11 11 C 1.52998 * 109.47489 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46944 * 59.99771 * 11 10 9 13 13 N 1.46902 * 109.47336 * 180.02562 * 12 11 10 14 14 C 1.46895 * 111.00427 * 206.77828 * 13 12 11 15 15 H 1.09004 * 109.47233 * 325.75884 * 14 13 12 16 16 C 1.53007 * 109.47150 * 85.75519 * 14 13 12 17 17 C 1.52997 * 109.47106 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47197 * 300.00181 * 17 16 14 19 19 C 1.52998 * 109.47072 * 60.00296 * 18 17 16 20 20 C 1.52991 * 109.47436 * 205.75967 * 14 13 12 21 21 H 1.08995 * 109.47687 * 59.99722 * 20 14 13 22 22 N 1.46905 * 109.47070 * 300.00075 * 20 14 13 23 23 C 1.53003 * 109.47529 * 300.00188 * 12 11 10 24 24 C 1.52997 * 109.47182 * 180.27224 * 9 7 2 25 25 H 0.96998 * 120.00251 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47257 * 60.26835 * 9 7 2 27 27 H 1.09002 * 109.47099 * 300.00459 * 10 9 7 28 28 H 1.09001 * 109.47366 * 59.99357 * 10 9 7 29 29 H 1.09003 * 109.46771 * 300.00072 * 11 10 9 30 30 H 1.08999 * 109.47119 * 180.02562 * 11 10 9 31 31 H 1.08995 * 109.47342 * 60.00264 * 12 11 10 32 32 H 1.00902 * 110.99886 * 82.81720 * 13 12 11 33 33 H 1.09000 * 109.47317 * 300.00460 * 16 14 13 34 34 H 1.09004 * 109.46755 * 60.00072 * 16 14 13 35 35 H 1.09004 * 109.47252 * 60.00380 * 17 16 14 36 36 H 1.08997 * 109.46937 * 180.02562 * 17 16 14 37 37 H 1.09005 * 109.47150 * 179.97438 * 18 17 16 38 38 H 1.08997 * 109.47638 * 299.99795 * 18 17 16 39 39 H 1.08995 * 109.47288 * 59.99839 * 19 18 17 40 40 H 1.09000 * 109.47148 * 179.97438 * 19 18 17 41 41 H 1.00905 * 111.00273 * 180.02562 * 22 20 14 42 42 H 1.00900 * 110.99880 * 303.95439 * 22 20 14 43 43 H 1.09003 * 109.47186 * 300.00312 * 23 12 11 44 44 H 1.08993 * 109.47450 * 180.02562 * 23 12 11 45 45 H 1.08999 * 109.47406 * 299.99461 * 24 9 7 46 46 H 1.09003 * 109.47141 * 59.99928 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0072 10 6 0.3715 -2.5737 1.2569 11 6 -0.3930 -3.8990 1.2641 12 6 0.6017 -5.0615 1.2705 13 7 -0.1322 -6.3340 1.2768 14 6 0.6651 -7.3985 1.9005 15 1 1.7198 -7.2428 1.6738 16 6 0.4594 -7.3683 3.4164 17 6 1.2893 -8.4775 4.0659 18 6 0.8443 -9.8348 3.5178 19 6 1.0501 -9.8650 2.0020 20 6 0.2208 -8.7561 1.3525 21 1 0.3673 -8.7777 0.2726 22 7 -1.2007 -8.9661 1.6580 23 6 1.4814 -4.9870 0.0209 24 6 2.2455 -3.6619 0.0133 25 1 -0.4850 0.8400 -0.0004 26 1 0.6245 -2.5615 -0.8824 27 1 0.9981 -2.5112 2.1466 28 1 -0.3368 -1.7452 1.2526 29 1 -1.0196 -3.9618 0.3744 30 1 -1.0200 -3.9519 2.1541 31 1 1.2283 -4.9986 2.1601 32 1 -0.4146 -6.5932 0.3435 33 1 0.7759 -6.4011 3.8068 34 1 -0.5954 -7.5241 3.6430 35 1 2.3441 -8.3222 3.8392 36 1 1.1424 -8.4562 5.1457 37 1 1.4359 -10.6250 3.9802 38 1 -0.2104 -9.9902 3.7444 39 1 2.1049 -9.7097 1.7753 40 1 0.7336 -10.8322 1.6116 41 1 -1.5184 -9.8569 1.3064 42 1 -1.3732 -8.8865 2.6489 43 1 0.8548 -5.0498 -0.8689 44 1 2.1897 -5.8153 0.0252 45 1 2.8721 -3.6088 -0.8770 46 1 2.8721 -3.5995 0.9030 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246477683.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:18 Heat of formation + Delta-G solvation = -37.261391 kcal Electronic energy + Delta-G solvation = -21420.319560 eV Core-core repulsion = 18535.551862 eV Total energy + Delta-G solvation = -2884.767698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.66591 -37.67207 -34.31325 -32.92915 -32.14661 -29.93811 -29.60577 -28.56563 -26.74975 -24.14525 -22.63053 -21.93545 -21.38337 -20.23491 -19.20719 -18.55124 -16.58781 -16.25109 -15.34127 -15.12167 -14.94822 -14.52196 -14.16230 -14.03807 -13.38881 -13.10107 -12.95683 -12.73253 -12.38964 -12.22080 -12.09833 -11.88990 -11.82596 -11.34277 -11.18738 -10.99011 -10.85240 -10.65849 -10.50712 -10.40325 -10.26175 -10.11304 -10.03047 -9.69617 -9.29516 -8.84658 -8.68332 -8.59665 -8.22243 -7.80301 -5.90687 -3.96824 3.33253 3.41310 3.45101 4.25284 4.49399 4.52130 4.59636 4.68388 4.86452 5.05207 5.21131 5.29497 5.35686 5.38855 5.42004 5.51262 5.52273 5.66372 5.69299 5.82040 5.87154 5.94156 5.98754 6.08713 6.18134 6.23942 6.38949 6.48598 6.49496 6.60448 6.74934 6.81136 6.87400 6.99598 7.11749 7.22857 7.37915 7.42362 7.58184 7.65630 7.84118 7.89233 8.11638 8.27171 8.55951 9.07671 9.67443 11.14648 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.041983 B = 0.003828 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.770979 B = 7313.396824 C = 7377.465852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.109 4.109 11 C -0.099 4.099 12 C 0.090 3.910 13 N -0.669 5.669 14 C 0.097 3.903 15 H 0.042 0.958 16 C -0.110 4.110 17 C -0.122 4.122 18 C -0.120 4.120 19 C -0.154 4.154 20 C 0.091 3.909 21 H 0.076 0.924 22 N -0.829 5.829 23 C -0.141 4.141 24 C -0.104 4.104 25 H 0.258 0.742 26 H 0.024 0.976 27 H 0.030 0.970 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.341 0.659 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.332 0.668 42 H 0.341 0.659 43 H 0.055 0.945 44 H 0.038 0.962 45 H 0.043 0.957 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 -19.458 5.638 20.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.147 4.147 11 C -0.137 4.137 12 C -0.019 4.019 13 N -0.299 5.299 14 C -0.014 4.014 15 H 0.060 0.940 16 C -0.148 4.148 17 C -0.160 4.160 18 C -0.157 4.157 19 C -0.194 4.194 20 C -0.021 4.021 21 H 0.094 0.906 22 N -0.359 5.359 23 C -0.181 4.181 24 C -0.142 4.142 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.144 0.856 42 H 0.157 0.843 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.343 -18.532 5.762 19.410 hybrid contribution 1.588 -0.106 -0.162 1.600 sum 1.246 -18.638 5.600 19.501 Atomic orbital electron populations 1.69894 1.05793 1.26075 1.51084 1.24963 0.94817 0.98907 0.95322 0.86619 0.80160 0.84191 0.77502 1.19921 1.21132 1.21104 1.21286 0.92840 0.90897 1.50015 0.92918 1.18651 0.92586 0.91309 0.94426 1.21611 0.99546 0.95231 0.98353 1.21540 0.97141 0.94616 1.00444 1.21700 0.94122 0.89298 0.96776 1.60568 1.41543 1.01799 1.26015 1.21445 0.95198 0.89992 0.94718 0.93982 1.21554 1.00397 0.98254 0.94629 1.21580 1.00142 0.94536 0.99753 1.21528 1.01109 0.97654 0.95443 1.22346 1.01579 0.99325 0.96178 1.21568 0.87736 0.93795 0.99049 0.90627 1.58822 1.16733 1.38602 1.21779 1.22229 0.98776 0.98414 0.98643 1.21553 0.98576 0.94307 0.99776 0.93197 0.95826 0.95143 0.89037 0.93128 0.93481 0.91611 0.84045 0.91741 0.91113 0.92116 0.91953 0.92189 0.92260 0.91580 0.92154 0.85589 0.84309 0.92627 0.94365 0.93826 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 11.31 55.43 0.63 -25.12 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.29 8.56 -34.44 -0.29 -14.59 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.05 1.22 2.11 -91.77 -0.19 1.03 16 10 C -0.11 -2.60 4.98 -26.73 -0.13 -2.74 16 11 C -0.10 -1.99 5.53 -26.73 -0.15 -2.14 16 12 C 0.09 1.56 2.27 -67.71 -0.15 1.41 16 13 N -0.67 -9.82 5.90 -99.74 -0.59 -10.41 16 14 C 0.10 1.19 2.07 -67.72 -0.14 1.05 16 15 H 0.04 0.56 7.25 -51.93 -0.38 0.19 16 16 C -0.11 -1.27 5.16 -26.73 -0.14 -1.41 16 17 C -0.12 -1.14 5.92 -26.74 -0.16 -1.30 16 18 C -0.12 -0.96 5.66 -26.73 -0.15 -1.12 16 19 C -0.15 -1.30 5.60 -26.76 -0.15 -1.45 16 20 C 0.09 0.92 3.01 -67.74 -0.20 0.71 16 21 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 22 N -0.83 -8.05 8.95 -4.69 -0.04 -8.09 16 23 C -0.14 -2.51 5.15 -26.75 -0.14 -2.65 16 24 C -0.10 -2.20 5.14 -26.76 -0.14 -2.34 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.18 7.17 -51.93 -0.37 0.81 16 32 H 0.34 5.04 8.04 -39.29 -0.32 4.72 16 33 H 0.06 0.85 7.51 -51.93 -0.39 0.46 16 34 H 0.07 0.83 6.57 -51.93 -0.34 0.49 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.45 6.76 -51.93 -0.35 0.10 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.33 2.64 9.04 -39.29 -0.36 2.28 16 42 H 0.34 3.26 5.44 -39.29 -0.21 3.05 16 43 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 44 H 0.04 0.61 7.57 -51.93 -0.39 0.22 16 45 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 336.75 15.07 5.07 5.07 Total: -1.00 -28.00 336.75 -10.64 -38.64 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -8.46 Total: 7.28 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -2.23 Total: -23.92 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.00 Total: -43.62 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.00 -10.64 -38.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246477683.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.377 kcal (2) G-P(sol) polarization free energy of solvation -27.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds