Wall clock time and date at job start Mon Mar 30 2020 00:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99683 * 2 1 4 4 H 1.48504 * 109.47122 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47069 * 299.99396 * 3 2 1 6 6 H 1.48495 * 109.47461 * 59.99608 * 3 2 1 7 7 C 1.37876 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99887 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46795 * 300.00201 * 10 9 7 12 12 C 1.53008 * 109.46984 * 299.99755 * 11 10 9 13 13 N 1.46898 * 109.47065 * 180.02562 * 12 11 10 14 14 C 1.46847 * 110.99897 * 179.97438 * 13 12 11 15 15 C 1.53034 * 109.51345 * 174.16738 * 14 13 12 16 16 C 1.53099 * 109.29509 * 59.18740 * 15 14 13 17 17 C 1.52993 * 109.52781 * 182.43453 * 16 15 14 18 18 N 1.46897 * 109.47509 * 294.67817 * 17 16 15 19 19 C 1.53126 * 109.15071 * 302.33888 * 16 15 14 20 20 C 1.46854 * 110.99958 * 55.78893 * 13 12 11 21 21 C 1.52992 * 109.46955 * 60.00094 * 12 11 10 22 22 C 1.52999 * 109.47690 * 299.99954 * 21 12 11 23 23 H 0.97003 * 120.00435 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46898 * 299.99957 * 9 7 2 25 25 H 1.08996 * 109.47064 * 179.97438 * 10 9 7 26 26 H 1.08995 * 109.46735 * 59.99671 * 10 9 7 27 27 H 1.09002 * 109.47119 * 180.02562 * 11 10 9 28 28 H 1.08997 * 109.47975 * 59.99745 * 11 10 9 29 29 H 1.09005 * 109.46956 * 299.99915 * 12 11 10 30 30 H 1.09002 * 109.46481 * 294.17890 * 14 13 12 31 31 H 1.08994 * 109.46283 * 54.15743 * 14 13 12 32 32 H 1.09007 * 109.50453 * 179.12106 * 15 14 13 33 33 H 1.09009 * 109.50412 * 299.23146 * 15 14 13 34 34 H 1.09002 * 109.57693 * 62.27167 * 16 15 14 35 35 H 1.09004 * 109.47084 * 54.67770 * 17 16 15 36 36 H 1.09001 * 109.46990 * 174.67248 * 17 16 15 37 37 H 1.00903 * 110.99914 * 56.04345 * 18 17 16 38 38 H 1.00897 * 111.00063 * 180.02562 * 18 17 16 39 39 H 1.08994 * 109.50076 * 297.71308 * 19 16 15 40 40 H 1.08998 * 109.53581 * 177.61293 * 19 16 15 41 41 H 1.08993 * 109.46229 * 305.85774 * 20 13 12 42 42 H 1.09008 * 109.45803 * 65.83386 * 20 13 12 43 43 H 1.09007 * 109.46915 * 60.00670 * 21 12 11 44 44 H 1.09004 * 109.47113 * 179.97438 * 21 12 11 45 45 H 1.08995 * 109.46869 * 300.00514 * 22 21 12 46 46 H 1.08993 * 109.47029 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 3.1260 -3.5814 -1.2467 12 6 2.2473 -3.6631 -2.4967 13 7 3.0928 -3.5863 -3.6955 14 6 2.2816 -3.6623 -4.9172 15 6 3.1747 -3.4340 -6.1388 16 6 4.2747 -4.4985 -6.1674 17 6 5.2068 -4.2391 -7.3526 18 7 4.4658 -4.4227 -8.6076 19 6 5.0741 -4.4300 -4.8631 20 6 4.1258 -4.6299 -3.6786 21 6 1.2530 -2.5003 -2.4979 22 6 0.3724 -2.5808 -1.2493 23 1 -0.4851 0.8400 -0.0004 24 1 0.6241 -2.5567 0.8903 25 1 1.7005 -4.6060 0.0023 26 1 2.8714 -3.6038 0.8922 27 1 3.8341 -4.4101 -1.2461 28 1 3.6710 -2.6375 -1.2469 29 1 1.7024 -4.6072 -2.4967 30 1 1.8184 -4.6467 -4.9850 31 1 1.5060 -2.8973 -4.8864 32 1 2.5754 -3.5059 -7.0464 33 1 3.6276 -2.4442 -6.0786 34 1 3.8246 -5.4862 -6.2673 35 1 5.5856 -3.2183 -7.3003 36 1 6.0419 -4.9387 -7.3179 37 1 3.6493 -3.8306 -8.6354 38 1 5.0602 -4.2573 -9.4060 39 1 5.5567 -3.4560 -4.7829 40 1 5.8321 -5.2132 -4.8586 41 1 4.6895 -4.5679 -2.7479 42 1 3.6535 -5.6096 -3.7526 43 1 1.7980 -1.5563 -2.4980 44 1 0.6273 -2.5582 -3.3886 45 1 -0.1725 -3.5248 -1.2493 46 1 -0.3356 -1.7521 -1.2500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246537700.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:06 Heat of formation + Delta-G solvation = -23.870964 kcal Electronic energy + Delta-G solvation = -21725.011323 eV Core-core repulsion = 18840.824277 eV Total energy + Delta-G solvation = -2884.187046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.48365 -37.42017 -35.13324 -32.63835 -31.49427 -30.89950 -29.39038 -28.24894 -25.59069 -24.42801 -23.28296 -21.88591 -20.82418 -20.18244 -19.51413 -18.58365 -16.37372 -15.78790 -15.58497 -15.14508 -14.60177 -14.55086 -14.14492 -13.91313 -13.66967 -13.08379 -13.04284 -12.86886 -12.58817 -12.34949 -12.07244 -11.58209 -11.33454 -11.11673 -11.09270 -10.91672 -10.76115 -10.72347 -10.48395 -10.28058 -10.12736 -10.03108 -9.94354 -9.54440 -9.10600 -8.90361 -8.74900 -8.52695 -8.21179 -7.83682 -5.89968 -3.93345 3.34245 3.42671 3.46805 4.25397 4.35439 4.51205 4.76180 4.82506 4.97557 5.30935 5.37734 5.41000 5.46236 5.54407 5.62878 5.66345 5.72034 5.75068 5.91601 5.92749 6.01120 6.10034 6.16459 6.21963 6.22705 6.35134 6.47123 6.53620 6.60157 6.62530 6.77427 6.82019 6.88413 6.92072 7.17211 7.20070 7.27688 7.48930 7.56361 7.60971 7.76047 7.82518 8.00946 8.22811 8.56420 9.08919 9.69604 11.16159 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.024236 B = 0.004936 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.037587 B = 5671.433125 C = 6041.958915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.495 4.495 8 H 0.056 0.944 9 C 0.044 3.956 10 C -0.106 4.106 11 C -0.099 4.099 12 C 0.095 3.905 13 N -0.531 5.531 14 C 0.054 3.946 15 C -0.111 4.111 16 C -0.087 4.087 17 C 0.067 3.933 18 N -0.854 5.854 19 C -0.109 4.109 20 C 0.053 3.947 21 C -0.091 4.091 22 C -0.107 4.107 23 H 0.257 0.743 24 H 0.023 0.977 25 H 0.030 0.970 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.078 0.922 29 H 0.022 0.978 30 H 0.025 0.975 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.341 0.659 38 H 0.338 0.662 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.024 0.976 43 H 0.078 0.922 44 H 0.031 0.969 45 H 0.010 0.990 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.421 -8.231 -12.452 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.025 3.975 10 C -0.144 4.144 11 C -0.137 4.137 12 C -0.012 4.012 13 N -0.256 5.256 14 C -0.074 4.074 15 C -0.149 4.149 16 C -0.106 4.106 17 C -0.064 4.064 18 N -0.384 5.384 19 C -0.148 4.148 20 C -0.076 4.076 21 C -0.129 4.129 22 C -0.146 4.146 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.043 0.957 43 H 0.097 0.903 44 H 0.049 0.951 45 H 0.029 0.971 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.423 -8.407 -12.204 16.575 hybrid contribution 0.232 1.147 -0.234 1.193 sum 7.655 -7.260 -12.438 16.310 Atomic orbital electron populations 1.69877 1.05821 1.25952 1.51618 1.24919 0.94724 0.98753 0.95561 0.86669 0.80305 0.84453 0.77387 1.19855 1.21211 1.21315 1.21184 0.92767 0.90355 1.49061 0.92616 1.18693 0.92658 0.92141 0.93988 1.21555 0.98293 0.98539 0.96056 1.21528 0.97204 1.01256 0.93681 1.21655 0.93379 0.97505 0.88675 1.61979 1.14627 1.46986 1.02018 1.22074 0.95651 0.99956 0.89697 1.21637 0.96888 0.99172 0.97177 1.21226 0.95952 0.99757 0.93674 1.21834 0.96132 0.99018 0.89428 1.58763 1.11895 1.63579 1.04118 1.21598 0.97460 1.02144 0.93583 1.22109 0.94151 0.92515 0.98781 1.21450 0.96083 0.98290 0.97049 1.21516 0.98707 0.99210 0.95118 0.93322 0.95914 0.95106 0.93464 0.94568 0.90333 0.95973 0.95690 0.90110 0.92031 0.91393 0.90938 0.95461 0.91338 0.84585 0.85039 0.91172 0.92013 0.90152 0.95734 0.90296 0.95076 0.97078 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.50 -13.21 6.61 -34.44 -0.23 -13.43 16 8 H 0.06 1.49 6.71 -52.48 -0.35 1.14 16 9 C 0.04 1.07 2.59 -91.77 -0.24 0.84 16 10 C -0.11 -2.22 5.41 -26.73 -0.14 -2.37 16 11 C -0.10 -1.91 4.62 -26.73 -0.12 -2.03 16 12 C 0.10 1.77 1.95 -67.71 -0.13 1.64 16 13 N -0.53 -8.68 4.53 -226.68 -1.03 -9.71 16 14 C 0.05 0.79 5.22 -3.84 -0.02 0.77 16 15 C -0.11 -1.33 5.09 -26.66 -0.14 -1.47 16 16 C -0.09 -0.97 2.46 -90.51 -0.22 -1.20 16 17 C 0.07 0.64 6.25 -3.83 -0.02 0.62 16 18 N -0.85 -7.58 9.62 -10.37 -0.10 -7.68 16 19 C -0.11 -1.29 5.38 -26.64 -0.14 -1.43 16 20 C 0.05 0.74 5.13 -3.83 -0.02 0.72 16 21 C -0.09 -1.92 4.76 -26.74 -0.13 -2.05 16 22 C -0.11 -2.52 5.24 -26.73 -0.14 -2.66 16 23 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 24 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.62 6.21 -51.93 -0.32 0.29 16 28 H 0.08 1.68 6.62 -51.93 -0.34 1.33 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 1.26 6.01 -51.93 -0.31 0.94 16 32 H 0.06 0.65 6.81 -51.93 -0.35 0.30 16 33 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.34 2.86 7.32 -39.29 -0.29 2.57 16 38 H 0.34 2.39 9.08 -39.29 -0.36 2.03 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.16 5.90 -51.93 -0.31 0.85 16 42 H 0.02 0.35 8.14 -51.92 -0.42 -0.08 16 43 H 0.08 1.89 7.22 -51.93 -0.37 1.51 16 44 H 0.03 0.61 6.28 -51.93 -0.33 0.28 16 45 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -27.62 330.72 -10.61 -38.23 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -8.28 Total: 3.03 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.79 Total: -20.49 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.50 Total: -42.08 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.62 -10.61 -38.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246537700.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.356 kcal (2) G-P(sol) polarization free energy of solvation -27.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds