Wall clock time and date at job start Mon Mar 30 2020 01:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47242 * 2 1 4 4 C 1.52996 * 109.47242 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47418 * 180.75329 * 4 3 2 6 6 C 1.46904 * 110.99914 * 299.38058 * 5 4 3 7 7 C 1.50697 * 109.46979 * 297.78596 * 6 5 4 8 8 H 1.08000 * 120.00240 * 3.35354 * 7 6 5 9 9 C 1.37878 * 120.00019 * 183.35597 * 7 6 5 10 10 N 1.31509 * 119.99878 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00084 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47138 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47241 * 119.99898 * 11 9 7 14 14 H 1.48500 * 109.47328 * 240.00265 * 11 9 7 15 15 C 1.46893 * 111.00349 * 175.42130 * 5 4 3 16 16 C 1.53133 * 109.43095 * 182.29640 * 15 5 4 17 17 C 1.53715 * 108.88423 * 66.06248 * 16 15 5 18 18 H 1.09000 * 112.12398 * 187.72363 * 17 16 15 19 19 C 1.54602 * 107.81312 * 311.74029 * 17 16 15 20 20 C 1.55887 * 104.07839 * 88.77615 * 19 17 16 21 21 C 1.54608 * 104.99610 * 359.97438 * 20 19 17 22 22 H 1.08996 * 112.22228 * 146.88164 * 21 20 19 23 23 C 1.53135 * 109.42962 * 302.50911 * 15 5 4 24 24 N 1.48717 * 104.22202 * 25.19313 * 21 20 19 25 25 H 1.09003 * 109.47078 * 300.00280 * 1 2 3 26 26 H 1.08998 * 109.47042 * 60.00009 * 1 2 3 27 27 H 1.08997 * 109.46939 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47277 * 240.00196 * 2 1 3 29 29 H 1.09005 * 109.47396 * 119.99972 * 2 1 3 30 30 H 1.09000 * 109.46825 * 59.99919 * 3 2 1 31 31 H 1.08994 * 109.46614 * 299.99917 * 3 2 1 32 32 H 1.09010 * 109.46973 * 60.75494 * 4 3 2 33 33 H 1.08995 * 109.47245 * 300.75822 * 4 3 2 34 34 H 1.08998 * 109.46980 * 57.78593 * 6 5 4 35 35 H 1.09000 * 109.46633 * 177.78834 * 6 5 4 36 36 H 0.97001 * 120.00648 * 180.02562 * 10 9 7 37 37 H 1.09007 * 109.42639 * 62.40158 * 15 5 4 38 38 H 1.08999 * 109.57021 * 185.88785 * 16 15 5 39 39 H 1.09000 * 109.56617 * 306.12983 * 16 15 5 40 40 H 1.09001 * 110.36612 * 207.40390 * 19 17 16 41 41 H 1.09004 * 110.36112 * 329.72096 * 19 17 16 42 42 H 1.08998 * 110.28306 * 241.09300 * 20 19 17 43 43 H 1.08999 * 110.30426 * 118.86833 * 20 19 17 44 44 H 1.08997 * 109.56813 * 53.75893 * 23 15 5 45 45 H 1.09000 * 109.57127 * 174.11235 * 23 15 5 46 46 H 1.00903 * 111.00095 * 77.50994 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8274 0.0189 6 6 3.6013 3.5635 -1.1670 7 6 4.1617 2.9167 -2.4073 8 1 4.7502 2.0146 -2.3272 9 6 3.9231 3.4765 -3.6446 10 7 3.2070 4.5751 -3.7421 11 14 4.6183 2.6751 -5.1821 12 1 5.3826 1.4592 -4.8042 13 1 3.5054 2.2973 -6.0898 14 1 5.5191 3.6312 -5.8746 15 6 5.5239 2.8666 0.1295 16 6 5.9904 4.3233 0.2030 17 6 5.4825 4.9428 1.5149 18 1 5.6684 6.0158 1.5612 19 6 3.9800 4.6035 1.6475 20 6 3.9649 3.2323 2.3890 21 6 5.4538 2.8886 2.6248 22 1 5.6081 2.3401 3.5539 23 6 5.9594 2.1211 1.3942 24 7 6.1371 4.2095 2.6308 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9403 -0.8959 33 1 3.9329 0.9171 0.8839 34 1 2.5123 3.5448 -1.2077 35 1 3.9451 4.5962 -1.1088 36 1 3.0388 4.9689 -4.6125 37 1 5.9665 2.3878 -0.7441 38 1 7.0796 4.3595 0.1797 39 1 5.5885 4.8785 -0.6446 40 1 3.4701 5.3639 2.2390 41 1 3.5220 4.5180 0.6620 42 1 3.4940 2.4714 1.7667 43 1 3.4413 3.3227 3.3407 44 1 5.5339 1.1176 1.3912 45 1 7.0472 2.0581 1.4246 46 1 5.9953 4.6860 3.5089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001246770655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:15 Heat of formation + Delta-G solvation = 35.810566 kcal Electronic energy + Delta-G solvation = -22807.233596 eV Core-core repulsion = 19925.634536 eV Total energy + Delta-G solvation = -2881.599060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.56129 -36.48969 -34.15356 -32.51608 -31.00494 -30.69169 -28.97931 -28.00750 -26.01686 -23.72335 -23.12825 -22.52344 -20.82341 -19.73207 -19.36135 -17.99635 -16.79195 -16.25251 -15.65077 -14.73736 -14.64761 -14.00370 -13.67488 -13.34130 -13.05735 -12.88401 -12.68476 -12.38928 -12.20554 -12.07493 -11.90413 -11.56968 -11.31900 -11.10908 -11.00953 -10.87233 -10.69554 -10.48211 -10.43294 -10.31977 -9.93349 -9.90690 -9.77365 -9.64915 -9.52735 -9.24795 -9.16015 -8.39660 -8.20524 -6.90415 -6.01526 -4.10703 3.25159 3.34125 3.37014 4.40299 4.69235 4.89955 5.26793 5.30913 5.34744 5.38777 5.50408 5.55048 5.62328 5.78291 5.82921 5.90250 5.93423 6.02196 6.03125 6.12926 6.15087 6.19273 6.24603 6.29710 6.34082 6.47648 6.51974 6.62060 6.64610 6.72107 6.77930 6.84929 6.89161 6.94822 7.00899 7.16872 7.22943 7.29764 7.51347 7.56129 7.81110 7.90575 8.10742 8.29653 8.31850 8.99071 9.55671 11.01633 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.008894 C = 0.006328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.209562 B = 3147.413342 C = 4423.866016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.049 3.951 5 N -0.519 5.519 6 C 0.172 3.828 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.066 3.934 10 N -0.890 5.890 11 Si 0.884 3.116 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.093 3.907 16 C -0.098 4.098 17 C 0.068 3.932 18 H 0.074 0.926 19 C -0.143 4.143 20 C -0.145 4.145 21 C 0.068 3.932 22 H 0.073 0.927 23 C -0.105 4.105 24 N -0.663 5.663 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.260 0.740 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.025 0.975 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.180 -4.233 10.647 11.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.152 4.152 4 C -0.078 4.078 5 N -0.243 5.243 6 C 0.047 3.953 7 C -0.580 4.580 8 H 0.074 0.926 9 C -0.136 4.136 10 N -0.529 5.529 11 Si 0.712 3.288 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.211 1.211 15 C -0.016 4.016 16 C -0.136 4.136 17 C -0.042 4.042 18 H 0.092 0.908 19 C -0.182 4.182 20 C -0.184 4.184 21 C -0.042 4.042 22 H 0.091 0.909 23 C -0.143 4.143 24 N -0.290 5.290 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.045 0.955 41 H 0.139 0.861 42 H 0.134 0.866 43 H 0.043 0.957 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.590 -4.063 10.578 11.347 hybrid contribution -0.159 -0.523 -1.354 1.461 sum 0.431 -4.587 9.224 10.310 Atomic orbital electron populations 1.21747 0.96464 1.00702 1.01749 1.21479 0.95311 0.97923 1.01217 1.21619 0.95606 0.95352 1.02663 1.22057 0.94745 0.91700 0.99330 1.63611 1.08661 1.11668 1.40390 1.19944 0.96237 0.94348 0.84722 1.21723 1.33209 1.10718 0.92356 0.92640 1.24918 0.95056 0.94808 0.98865 1.69935 1.38978 1.19711 1.24293 0.86672 0.78906 0.79497 0.83734 1.19970 1.21106 1.21062 1.21360 0.89395 0.95480 0.95354 1.21709 0.99418 0.95875 0.96607 1.22779 0.93123 0.96227 0.92051 0.90794 1.23540 0.96329 0.94432 1.03881 1.23581 0.96272 1.00646 0.97890 1.22722 0.93046 0.91412 0.96998 0.90899 1.21819 0.99941 0.97931 0.94601 1.63871 1.54611 1.03944 1.06546 0.93093 0.92682 0.93526 0.92333 0.92889 0.92403 0.90642 0.94343 0.92622 0.94917 0.94200 0.92977 0.93564 0.92549 0.90159 0.95473 0.86130 0.86567 0.95650 0.92147 0.92133 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.11 -1.92 4.83 -26.73 -0.13 -2.05 16 4 C 0.05 0.88 3.23 -3.83 -0.01 0.87 16 5 N -0.52 -9.83 0.56 -227.92 -0.13 -9.95 16 6 C 0.17 4.02 3.04 -4.97 -0.02 4.00 16 7 C -0.54 -13.98 7.60 -34.44 -0.26 -14.24 16 8 H 0.06 1.46 5.82 -52.49 -0.31 1.15 16 9 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -25.21 13.28 55.43 0.74 -24.48 16 11 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.09 1.73 1.96 -67.58 -0.13 1.60 16 16 C -0.10 -1.82 5.17 -26.29 -0.14 -1.96 16 17 C 0.07 1.13 4.49 -65.49 -0.29 0.83 16 18 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 19 C -0.14 -2.44 6.00 -24.35 -0.15 -2.59 16 20 C -0.15 -2.29 5.94 -24.34 -0.14 -2.43 16 21 C 0.07 1.02 4.54 -65.55 -0.30 0.73 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 23 C -0.10 -1.68 5.16 -26.35 -0.14 -1.82 16 24 N -0.66 -10.04 7.11 -94.74 -0.67 -10.71 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.94 7.45 -51.93 -0.39 0.55 16 31 H 0.07 1.49 6.41 -51.93 -0.33 1.16 16 32 H 0.04 0.78 6.52 -51.92 -0.34 0.44 16 33 H 0.06 0.90 5.25 -51.93 -0.27 0.62 16 34 H 0.03 0.83 6.22 -51.93 -0.32 0.50 16 35 H 0.04 1.01 5.32 -51.93 -0.28 0.74 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.05 0.99 6.69 -51.92 -0.35 0.64 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.69 6.02 -51.93 -0.31 1.38 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.12 2.37 3.57 -51.93 -0.19 2.19 16 42 H 0.12 1.93 2.69 -51.93 -0.14 1.79 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.92 5.94 -51.93 -0.31 0.61 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.32 4.32 8.93 -39.29 -0.35 3.97 16 LS Contribution 319.77 15.07 4.82 4.82 Total: -1.00 -26.25 319.77 -9.53 -35.78 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.67 Total: 7.27 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -1.59 Total: -18.80 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.07 Total: -45.14 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.25 -9.53 -35.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001246770655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.589 kcal (2) G-P(sol) polarization free energy of solvation -26.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds