Wall clock time and date at job start Mon Mar 30 2020 00:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48507 * 109.46833 * 269.99940 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.99514 * 3 2 1 6 6 H 1.48492 * 109.47236 * 149.99615 * 3 2 1 7 7 C 1.37876 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.35353 * 126.75076 * 124.99944 * 11 10 9 13 13 N 1.35309 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.46499 * 125.87027 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47215 * 124.97307 * 14 13 12 16 16 C 1.52995 * 109.47181 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47181 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.47306 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47407 * 180.02562 * 18 17 16 20 20 N 1.46899 * 109.47547 * 180.02562 * 19 18 17 21 21 N 1.28714 * 108.26535 * 359.97438 * 13 12 11 22 22 N 1.28637 * 110.18046 * 0.02562 * 21 13 12 23 23 H 0.96997 * 120.00214 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.46858 * 59.99942 * 9 7 2 25 25 H 1.09003 * 109.47046 * 300.00339 * 9 7 2 26 26 H 1.08997 * 109.47274 * 60.00636 * 10 9 7 27 27 H 1.09004 * 109.46966 * 299.99799 * 10 9 7 28 28 H 1.08002 * 126.91189 * 359.97438 * 12 11 10 29 29 H 1.08997 * 109.47592 * 244.97299 * 14 13 12 30 30 H 1.09007 * 109.46901 * 4.97623 * 14 13 12 31 31 H 1.09001 * 109.47531 * 300.00255 * 15 14 13 32 32 H 1.09007 * 109.46928 * 60.00332 * 15 14 13 33 33 H 1.08997 * 109.47497 * 299.99913 * 16 15 14 34 34 H 1.09004 * 109.47532 * 60.00281 * 16 15 14 35 35 H 1.08992 * 109.47254 * 300.00146 * 17 16 15 36 36 H 1.09007 * 109.46928 * 60.00195 * 17 16 15 37 37 H 1.09001 * 109.47083 * 300.00590 * 18 17 16 38 38 H 1.09007 * 109.46807 * 60.00317 * 18 17 16 39 39 H 1.09006 * 109.46877 * 300.00408 * 19 18 17 40 40 H 1.09003 * 109.47239 * 59.99511 * 19 18 17 41 41 H 1.00896 * 111.00425 * 179.97438 * 20 19 18 42 42 H 1.00903 * 110.99634 * 303.95637 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0012 12 6 1.6266 -5.9797 -0.8869 13 7 0.7570 -6.9406 -0.4978 14 6 0.5493 -8.2301 -1.1613 15 6 0.7443 -9.3614 -0.1498 16 6 0.5280 -10.7081 -0.8429 17 6 0.7223 -11.8394 0.1687 18 6 0.5054 -13.1861 -0.5242 19 6 0.6991 -14.3173 0.4875 20 7 0.4915 -15.6104 -0.1779 21 7 0.1435 -6.5270 0.5554 22 7 0.5589 -5.3533 0.8788 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5572 -0.8898 25 1 0.6240 -2.5568 0.8903 26 1 2.8713 -3.6040 0.8923 27 1 2.8727 -3.6047 -0.8878 28 1 2.2940 -6.0138 -1.7353 29 1 -0.4628 -8.2729 -1.5636 30 1 1.2681 -8.3408 -1.9733 31 1 1.7564 -9.3187 0.2525 32 1 0.0255 -9.2507 0.6621 33 1 -0.4840 -10.7512 -1.2456 34 1 1.2470 -10.8187 -1.6547 35 1 1.7341 -11.7965 0.5717 36 1 0.0030 -11.7287 0.9802 37 1 -0.5066 -13.2287 -0.9270 38 1 1.2245 -13.2971 -1.3359 39 1 1.7110 -14.2749 0.8906 40 1 -0.0201 -14.2062 1.2990 41 1 0.6144 -16.3743 0.4697 42 1 -0.4166 -15.6499 -0.6161 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254157591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:53 Heat of formation + Delta-G solvation = 57.327658 kcal Electronic energy + Delta-G solvation = -18837.620627 eV Core-core repulsion = 15853.414275 eV Total energy + Delta-G solvation = -2984.206353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.79476 -37.44118 -35.84861 -34.27615 -33.37582 -31.88703 -30.91373 -29.18480 -27.37868 -25.18433 -24.22914 -22.08282 -21.73142 -21.43440 -21.23155 -19.68356 -16.93816 -16.71407 -16.25480 -16.14285 -15.95379 -15.19272 -14.74126 -14.46704 -14.34296 -13.75424 -13.54619 -13.15772 -13.04003 -12.82708 -12.24174 -12.11597 -11.97921 -11.50150 -11.46697 -11.33752 -11.15030 -10.95307 -10.92502 -10.85462 -10.59339 -10.40413 -9.94359 -9.57537 -9.43875 -9.23736 -9.02655 -8.46943 -8.25378 -5.90872 -3.93902 1.98235 2.58872 3.13251 3.37304 3.43438 3.47000 3.93064 4.27571 4.35427 4.52214 4.53567 4.62558 4.64729 4.80521 4.90200 4.95066 5.10408 5.15859 5.22507 5.38468 5.41730 5.44488 5.46404 5.53099 5.60340 5.66150 5.79594 5.87442 5.94287 6.03364 6.56885 6.58324 6.59983 6.77698 6.88267 6.93772 7.14218 7.78832 7.95569 8.12169 8.48890 9.01361 9.13831 9.69303 11.20360 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.086219 B = 0.002186 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.675492 B =12807.694062 C =12867.348809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.034 4.034 11 C 0.010 3.990 12 C -0.071 4.071 13 N -0.300 5.300 14 C 0.119 3.881 15 C -0.133 4.133 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.119 4.119 19 C 0.058 3.942 20 N -0.855 5.855 21 N -0.098 5.098 22 N -0.260 5.260 23 H 0.260 0.740 24 H 0.013 0.987 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.184 0.816 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.342 0.658 42 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.726 -28.444 -3.634 28.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.073 4.073 11 C -0.128 4.128 12 C -0.220 4.220 13 N -0.095 5.095 14 C -0.003 4.003 15 C -0.171 4.171 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.073 4.073 20 N -0.384 5.384 21 N -0.077 5.077 22 N -0.126 5.126 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.201 0.799 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.045 0.955 41 H 0.154 0.846 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.132 -28.473 -3.020 28.655 hybrid contribution 0.358 0.945 -0.330 1.063 sum 1.490 -27.528 -3.350 27.771 Atomic orbital electron populations 1.69989 1.06061 1.26470 1.50705 1.25023 0.94811 0.99186 0.95418 0.86600 0.79853 0.83588 0.77967 1.20772 1.21283 1.19859 1.21252 0.93010 0.91020 1.50722 0.92553 1.19038 0.93718 0.90164 0.97928 1.20197 0.97583 0.88133 1.01364 1.22636 0.98364 0.98538 0.93241 1.23376 1.01927 0.91184 1.05525 1.47276 1.26956 1.14796 1.20480 1.22023 1.04214 0.78617 0.95400 1.21893 1.03743 0.92819 0.98653 1.21502 1.02393 0.92982 0.98420 1.21534 1.02318 0.93480 0.98352 1.21586 1.02170 0.93304 0.98589 1.21839 1.00983 0.89166 0.95289 1.58720 1.37823 1.04326 1.37530 1.78201 1.19237 1.08672 1.01593 1.75107 1.11027 1.03014 1.23497 0.93066 0.96825 0.95479 0.91323 0.91568 0.79852 0.88766 0.88079 0.91054 0.89955 0.91417 0.91465 0.91671 0.91745 0.92115 0.91082 0.91016 0.95528 0.84630 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.80 13.29 55.43 0.74 -27.06 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.79 4.95 -27.88 -0.14 0.65 16 10 C -0.03 -0.72 5.73 -27.88 -0.16 -0.88 16 11 C 0.01 0.20 6.50 -82.77 -0.54 -0.34 16 12 C -0.07 -1.11 11.49 -17.05 -0.20 -1.30 16 13 N -0.30 -4.42 3.44 -61.26 -0.21 -4.63 16 14 C 0.12 1.07 6.46 -4.04 -0.03 1.05 16 15 C -0.13 -1.07 5.34 -26.73 -0.14 -1.21 16 16 C -0.11 -0.65 5.21 -26.73 -0.14 -0.79 16 17 C -0.12 -0.69 5.21 -26.73 -0.14 -0.83 16 18 C -0.12 -0.66 5.47 -26.73 -0.15 -0.81 16 19 C 0.06 0.33 6.79 -3.83 -0.03 0.30 16 20 N -0.85 -4.61 9.62 -10.37 -0.10 -4.71 16 21 N -0.10 -1.84 12.91 60.35 0.78 -1.06 16 22 N -0.26 -5.71 12.40 33.29 0.41 -5.30 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 27 H 0.07 1.28 8.12 -51.93 -0.42 0.85 16 28 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.80 8.12 -51.93 -0.42 0.37 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.34 1.37 9.08 -39.29 -0.36 1.01 16 42 H 0.34 1.46 8.99 -39.29 -0.35 1.10 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -35.11 352.59 -7.58 -42.70 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -7.43 Total: -4.24 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -2.06 Total: -18.00 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 1.62 Total: -42.77 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.11 -7.58 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254157591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.024 kcal (2) G-P(sol) polarization free energy of solvation -35.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds