Wall clock time and date at job start Mon Mar 30 2020 00:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00038 * 2 1 4 4 H 1.48507 * 109.46833 * 269.99940 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.99514 * 3 2 1 6 6 H 1.48492 * 109.47236 * 149.99615 * 3 2 1 7 7 C 1.37876 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00034 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46816 * 180.02562 * 10 9 7 12 12 C 1.35353 * 126.75076 * 124.99944 * 11 10 9 13 13 N 1.35309 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.46499 * 125.87027 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47215 * 124.97307 * 14 13 12 16 16 C 1.52995 * 109.47181 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.47181 * 180.02562 * 16 15 14 18 18 C 1.53003 * 109.47306 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47407 * 180.02562 * 18 17 16 20 20 N 1.46899 * 109.47547 * 180.02562 * 19 18 17 21 21 N 1.28714 * 108.26535 * 359.97438 * 13 12 11 22 22 N 1.28637 * 110.18046 * 0.02562 * 21 13 12 23 23 H 0.96997 * 120.00214 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.46858 * 59.99942 * 9 7 2 25 25 H 1.09003 * 109.47046 * 300.00339 * 9 7 2 26 26 H 1.08997 * 109.47274 * 60.00636 * 10 9 7 27 27 H 1.09004 * 109.46966 * 299.99799 * 10 9 7 28 28 H 1.08002 * 126.91189 * 359.97438 * 12 11 10 29 29 H 1.08997 * 109.47592 * 244.97299 * 14 13 12 30 30 H 1.09007 * 109.46901 * 4.97623 * 14 13 12 31 31 H 1.09001 * 109.47531 * 300.00255 * 15 14 13 32 32 H 1.09007 * 109.46928 * 60.00332 * 15 14 13 33 33 H 1.08997 * 109.47497 * 299.99913 * 16 15 14 34 34 H 1.09004 * 109.47532 * 60.00281 * 16 15 14 35 35 H 1.08992 * 109.47254 * 300.00146 * 17 16 15 36 36 H 1.09007 * 109.46928 * 60.00195 * 17 16 15 37 37 H 1.09001 * 109.47083 * 300.00590 * 18 17 16 38 38 H 1.09007 * 109.46807 * 60.00317 * 18 17 16 39 39 H 1.09006 * 109.46877 * 300.00408 * 19 18 17 40 40 H 1.09003 * 109.47239 * 59.99511 * 19 18 17 41 41 H 1.00896 * 111.00425 * 179.97438 * 20 19 18 42 42 H 1.00903 * 110.99634 * 303.95637 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0018 11 6 1.4918 -4.9672 0.0012 12 6 1.6266 -5.9797 -0.8869 13 7 0.7570 -6.9406 -0.4978 14 6 0.5493 -8.2301 -1.1613 15 6 0.7443 -9.3614 -0.1498 16 6 0.5280 -10.7081 -0.8429 17 6 0.7223 -11.8394 0.1687 18 6 0.5054 -13.1861 -0.5242 19 6 0.6991 -14.3173 0.4875 20 7 0.4915 -15.6104 -0.1779 21 7 0.1435 -6.5270 0.5554 22 7 0.5589 -5.3533 0.8788 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5572 -0.8898 25 1 0.6240 -2.5568 0.8903 26 1 2.8713 -3.6040 0.8923 27 1 2.8727 -3.6047 -0.8878 28 1 2.2940 -6.0138 -1.7353 29 1 -0.4628 -8.2729 -1.5636 30 1 1.2681 -8.3408 -1.9733 31 1 1.7564 -9.3187 0.2525 32 1 0.0255 -9.2507 0.6621 33 1 -0.4840 -10.7512 -1.2456 34 1 1.2470 -10.8187 -1.6547 35 1 1.7341 -11.7965 0.5717 36 1 0.0030 -11.7287 0.9802 37 1 -0.5066 -13.2287 -0.9270 38 1 1.2245 -13.2971 -1.3359 39 1 1.7110 -14.2749 0.8906 40 1 -0.0201 -14.2062 1.2990 41 1 0.6144 -16.3743 0.4697 42 1 -0.4166 -15.6499 -0.6161 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254157591.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:52 Heat of formation + Delta-G solvation = 32.592236 kcal Electronic energy + Delta-G solvation = -18838.693236 eV Core-core repulsion = 15853.414275 eV Total energy + Delta-G solvation = -2985.278961 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.12983 -38.01375 -36.72087 -35.86112 -34.52897 -33.68002 -31.71060 -30.86537 -28.11861 -27.14234 -25.00792 -23.72583 -22.77170 -22.23857 -21.94967 -21.08108 -18.54543 -17.94966 -17.43332 -16.99392 -16.53803 -16.46158 -15.82986 -15.77180 -15.21408 -15.00618 -14.77793 -14.23478 -14.14385 -13.85627 -13.64122 -13.29948 -12.91501 -12.80295 -12.64676 -12.50945 -12.34811 -12.07535 -12.01464 -11.95789 -11.72024 -11.70042 -11.40287 -11.31819 -11.19545 -10.84789 -10.52453 -9.94064 -9.64590 -8.15603 -6.28309 0.72258 1.42725 1.45692 1.56003 1.57621 1.64279 2.44796 3.17399 3.43221 3.51626 3.72941 3.81893 4.01147 4.08630 4.12980 4.17571 4.29705 4.30794 4.39029 4.55752 4.61869 4.68694 4.74589 4.79597 4.92030 4.95566 4.99356 5.05737 5.06816 5.14509 5.27171 5.36926 5.42570 5.48148 5.53769 5.75283 5.81850 5.88746 6.20935 6.25080 6.55866 6.90003 7.41194 7.62802 8.96848 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.086219 B = 0.002186 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.675492 B =12807.694062 C =12867.348809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.071 0.929 9 C 0.037 3.963 10 C -0.018 4.018 11 C -0.032 4.032 12 C -0.038 4.038 13 N -0.285 5.285 14 C 0.106 3.894 15 C -0.126 4.126 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.112 4.112 19 C 0.056 3.944 20 N -0.863 5.863 21 N -0.120 5.120 22 N -0.316 5.316 23 H 0.262 0.738 24 H -0.016 1.016 25 H -0.018 1.018 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.235 0.765 29 H 0.108 0.892 30 H 0.143 0.857 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.026 0.974 41 H 0.348 0.652 42 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 -29.487 -5.570 30.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.089 0.911 9 C 0.000 4.000 10 C -0.058 4.058 11 C -0.171 4.171 12 C -0.189 4.189 13 N -0.079 5.079 14 C -0.013 4.013 15 C -0.164 4.164 16 C -0.144 4.144 17 C -0.156 4.156 18 C -0.150 4.150 19 C -0.074 4.074 20 N -0.394 5.394 21 N -0.099 5.099 22 N -0.182 5.182 23 H 0.071 0.929 24 H 0.002 0.998 25 H 0.000 1.000 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.252 0.748 29 H 0.126 0.874 30 H 0.161 0.839 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.161 0.839 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.946 -29.567 -4.950 30.123 hybrid contribution -0.251 1.122 0.234 1.174 sum 2.696 -28.445 -4.715 28.959 Atomic orbital electron populations 1.70159 1.08187 1.27676 1.51822 1.26094 0.95725 1.03761 0.94714 0.85349 0.78585 0.77891 0.78592 1.19405 1.21221 1.18330 1.21740 0.93910 0.91887 1.50366 0.91059 1.18839 0.94096 0.92777 0.94298 1.19894 0.96328 0.86960 1.02569 1.22564 0.99671 0.99539 0.95323 1.23943 1.00898 0.89322 1.04762 1.47761 1.25131 1.16015 1.19029 1.22636 1.06465 0.76034 0.96165 1.21818 1.02655 0.93862 0.98067 1.21450 1.03362 0.91175 0.98421 1.21509 1.01939 0.93825 0.98301 1.21515 1.02237 0.92963 0.98296 1.21832 1.00722 0.89479 0.95403 1.58730 1.38337 1.04459 1.37855 1.78088 1.20286 1.07986 1.03506 1.75032 1.12773 1.04739 1.25687 0.92946 0.99809 0.99951 0.91634 0.88696 0.74825 0.87415 0.83917 0.91680 0.92231 0.90658 0.89800 0.91974 0.92478 0.91749 0.91389 0.91501 0.95534 0.83890 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.07 13.29 21.45 0.28 -59.78 16 2 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 3 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.04 2.13 4.95 29.85 0.15 2.28 16 10 C -0.02 -0.80 5.73 29.85 0.17 -0.63 16 11 C -0.03 -1.29 6.50 41.60 0.27 -1.02 16 12 C -0.04 -1.09 11.49 83.49 0.96 -0.13 16 13 N -0.28 -7.83 3.44 -347.73 -1.20 -9.03 16 14 C 0.11 1.56 6.46 86.38 0.56 2.12 16 15 C -0.13 -1.77 5.34 30.59 0.16 -1.61 16 16 C -0.11 -0.93 5.21 30.59 0.16 -0.77 16 17 C -0.12 -1.19 5.21 30.60 0.16 -1.03 16 18 C -0.11 -1.07 5.47 30.59 0.17 -0.90 16 19 C 0.06 0.58 6.79 86.30 0.59 1.17 16 20 N -0.86 -8.33 9.62 -186.72 -1.80 -10.13 16 21 N -0.12 -4.55 12.91 37.02 0.48 -4.07 16 22 N -0.32 -14.39 12.40 -48.59 -0.60 -15.00 16 23 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 24 H -0.02 -1.02 8.14 -2.38 -0.02 -1.03 16 25 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 26 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.09 3.49 8.12 -2.39 -0.02 3.47 16 28 H 0.24 4.05 8.06 -2.91 -0.02 4.03 16 29 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.14 1.00 8.07 -2.38 -0.02 0.98 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.13 8.12 -2.38 -0.02 1.11 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.35 2.46 9.08 -89.70 -0.81 1.65 16 42 H 0.35 2.55 8.99 -89.69 -0.81 1.74 16 Total: -1.00 -80.34 352.59 2.60 -77.74 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -0.63 Total: 4.89 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 4.04 Total: -31.87 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -2.83 Total: -98.00 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -80.34 2.60 -77.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254157591.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.330 kcal (2) G-P(sol) polarization free energy of solvation -80.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds