Wall clock time and date at job start Mon Mar 30 2020 01:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47157 * 2 1 4 4 C 1.53003 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47236 * 179.97438 * 4 3 2 6 6 C 1.36928 * 120.00267 * 264.52077 * 5 4 3 7 7 H 1.08007 * 120.00393 * 146.50103 * 6 5 4 8 8 C 1.38808 * 120.00125 * 326.50073 * 6 5 4 9 9 N 1.31625 * 120.00143 * 337.38188 * 8 6 5 10 10 Si 1.86802 * 120.00025 * 157.38210 * 8 6 5 11 11 H 1.48501 * 109.47329 * 90.00178 * 10 8 6 12 12 H 1.48506 * 109.47085 * 209.99933 * 10 8 6 13 13 H 1.48498 * 109.47296 * 329.99779 * 10 8 6 14 14 C 1.46500 * 119.99631 * 84.52013 * 5 4 3 15 15 H 1.09002 * 108.91895 * 358.69125 * 14 5 4 16 16 C 1.52874 * 108.93532 * 117.30140 * 14 5 4 17 17 C 1.53047 * 109.10570 * 184.72948 * 16 14 5 18 18 C 1.51838 * 108.56814 * 30.95552 * 17 16 14 19 19 C 1.51031 * 112.52759 * 274.34189 * 18 17 16 20 20 N 1.44463 * 112.28456 * 16.45896 * 19 18 17 21 21 C 1.46930 * 113.46441 * 297.67622 * 20 19 18 22 22 C 1.51485 * 111.83289 * 48.74057 * 21 20 19 23 23 C 1.47124 * 116.72335 * 67.19046 * 20 19 18 24 24 H 1.08994 * 109.47050 * 300.00163 * 1 2 3 25 25 H 1.08996 * 109.46933 * 60.00325 * 1 2 3 26 26 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47433 * 239.99707 * 2 1 3 28 28 H 1.09004 * 109.47095 * 120.00278 * 2 1 3 29 29 H 1.09000 * 109.47188 * 59.99558 * 3 2 1 30 30 H 1.09001 * 109.47370 * 299.99597 * 3 2 1 31 31 H 1.09000 * 109.47094 * 59.99874 * 4 3 2 32 32 H 1.08996 * 109.47205 * 299.99882 * 4 3 2 33 33 H 0.96995 * 120.00243 * 180.02562 * 9 8 6 34 34 H 1.08999 * 110.05450 * 64.52757 * 16 14 5 35 35 H 1.08995 * 109.00864 * 304.30717 * 16 14 5 36 36 H 1.09006 * 108.14216 * 148.12521 * 17 16 14 37 37 H 1.09006 * 108.97575 * 35.32096 * 18 17 16 38 38 H 1.08997 * 108.97765 * 154.01985 * 18 17 16 39 39 H 1.09003 * 109.37745 * 255.49572 * 19 18 17 40 40 H 1.08999 * 108.63683 * 136.91818 * 19 18 17 41 41 H 1.09006 * 109.00998 * 288.13514 * 21 20 19 42 42 H 1.08996 * 108.94625 * 169.30157 * 21 20 19 43 43 H 1.09004 * 108.71593 * 246.25961 * 22 21 20 44 44 H 1.09000 * 108.62089 * 128.16859 * 22 21 20 45 45 H 1.08991 * 109.24060 * 84.24084 * 23 20 19 46 46 H 1.09000 * 109.23793 * 203.64103 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3939 3.4308 -1.1806 7 1 4.2316 4.4910 -1.3079 8 6 4.9425 2.6837 -2.2138 9 7 5.5471 1.5440 -1.9529 10 14 4.8229 3.2957 -3.9747 11 1 6.0057 4.1373 -4.2877 12 1 4.7822 2.1353 -4.9004 13 1 3.5857 4.1011 -4.1358 14 6 4.1878 3.5553 1.2626 15 1 3.8526 2.9147 2.0783 16 6 5.6589 3.9076 1.4833 17 6 5.8157 4.5672 2.8555 18 6 4.7650 3.9944 3.7901 19 6 3.4431 4.7175 3.6874 20 7 3.3482 5.5178 2.4884 21 6 4.3491 6.5913 2.4208 22 6 5.7429 6.0821 2.7252 23 6 3.3020 4.7912 1.2100 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 5.9308 1.0221 -2.6749 34 1 5.9992 4.5941 0.7081 35 1 6.2519 2.9938 1.4483 36 1 6.7987 4.3057 3.2474 37 1 4.6128 2.9421 3.5499 38 1 5.1227 4.0738 4.8167 39 1 3.3171 5.3658 4.5546 40 1 2.6415 3.9790 3.6825 41 1 4.0885 7.3657 3.1425 42 1 4.3393 7.0218 1.4195 43 1 6.0828 6.5301 3.6590 44 1 6.4112 6.3967 1.9237 45 1 2.2750 4.4886 1.0058 46 1 3.6481 5.4473 0.4113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254863818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:40 Heat of formation + Delta-G solvation = 11.932746 kcal Electronic energy + Delta-G solvation = -22389.135089 eV Core-core repulsion = 19506.500608 eV Total energy + Delta-G solvation = -2882.634480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.19075 -36.18174 -33.90840 -32.98106 -31.86884 -31.03793 -29.73976 -27.43346 -24.69831 -24.62225 -23.41029 -22.92374 -21.26332 -20.06091 -19.30802 -17.54259 -16.52918 -15.99240 -15.58936 -14.95833 -14.56139 -14.39913 -13.50319 -13.40976 -13.30169 -12.99709 -12.79111 -12.49950 -12.23036 -12.10856 -11.97602 -11.88781 -11.82937 -11.18252 -11.02710 -10.96099 -10.69087 -10.50470 -10.39683 -10.27884 -10.20141 -10.05500 -9.91323 -9.74415 -9.62719 -9.45786 -9.20217 -8.42698 -7.67337 -6.50823 -5.73543 -3.25458 3.37082 3.45415 3.48764 4.38948 4.55265 5.00879 5.07767 5.22806 5.31896 5.45400 5.46730 5.54296 5.57476 5.66059 5.73877 5.75742 5.88706 5.93300 6.03464 6.07442 6.14905 6.17498 6.18859 6.30320 6.30645 6.39200 6.44409 6.50518 6.53740 6.60113 6.65247 6.68313 6.72856 6.89334 6.94703 6.96035 7.17641 7.25973 7.33841 7.63651 7.79751 7.83888 7.90684 8.55537 9.24747 9.89646 10.45645 11.26757 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.008127 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.756899 B = 3444.494054 C = 4640.434249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.134 4.134 4 C 0.147 3.853 5 N -0.581 5.581 6 C -0.247 4.247 7 H 0.060 0.940 8 C 0.008 3.992 9 N -0.889 5.889 10 Si 0.890 3.110 11 H -0.288 1.288 12 H -0.290 1.290 13 H -0.279 1.279 14 C 0.146 3.854 15 H 0.053 0.947 16 C -0.114 4.114 17 C -0.085 4.085 18 C -0.148 4.148 19 C 0.084 3.916 20 N -0.563 5.563 21 C 0.069 3.931 22 C -0.138 4.138 23 C 0.064 3.936 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.014 0.986 33 H 0.252 0.748 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.784 3.448 9.259 10.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.174 4.174 4 C 0.020 3.980 5 N -0.301 5.301 6 C -0.377 4.377 7 H 0.077 0.923 8 C -0.191 4.191 9 N -0.532 5.532 10 Si 0.720 3.280 11 H -0.215 1.215 12 H -0.216 1.216 13 H -0.204 1.204 14 C 0.038 3.962 15 H 0.071 0.929 16 C -0.153 4.153 17 C -0.105 4.105 18 C -0.187 4.187 19 C -0.045 4.045 20 N -0.285 5.285 21 C -0.060 4.060 22 C -0.177 4.177 23 C -0.064 4.064 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.033 0.967 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.118 3.508 9.183 10.658 hybrid contribution 0.884 -0.193 -1.027 1.368 sum -3.234 3.315 8.156 9.380 Atomic orbital electron populations 1.21768 0.97048 1.00391 1.01322 1.21474 0.94589 0.98676 1.01220 1.22210 1.00527 0.94098 1.00522 1.20990 0.89039 0.86367 1.01559 1.43919 1.73807 1.11327 1.01059 1.18937 1.34717 0.93794 0.90244 0.92274 1.25019 0.97307 0.97949 0.98870 1.69999 1.36575 1.15754 1.30897 0.86496 0.78026 0.77876 0.85596 1.21521 1.21625 1.20431 1.20984 0.92553 0.93157 0.89509 0.92917 1.22041 0.99193 1.00207 0.93868 1.20635 0.98016 0.94477 0.97346 1.21726 0.97091 1.01168 0.98753 1.20905 0.95866 0.95818 0.91932 1.59699 1.49210 1.16599 1.02945 1.21750 0.89113 0.93636 1.01453 1.21622 0.98967 0.96043 1.01093 1.22443 0.99923 0.95714 0.88297 0.93317 0.93094 0.93732 0.92400 0.93001 0.94234 0.92574 0.88300 0.96735 0.93769 0.91823 0.92363 0.92544 0.91343 0.93169 0.91893 0.91582 0.92137 0.91386 0.93107 0.92030 0.91745 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.12 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.64 5.54 -26.73 -0.15 -2.79 16 4 C 0.15 3.39 5.17 -4.04 -0.02 3.36 16 5 N -0.58 -13.81 2.34 -166.24 -0.39 -14.20 16 6 C -0.25 -6.46 8.39 -15.06 -0.13 -6.59 16 7 H 0.06 1.56 6.84 -52.48 -0.36 1.20 16 8 C 0.01 0.21 4.91 -17.43 -0.09 0.13 16 9 N -0.89 -25.10 11.34 55.49 0.63 -24.47 16 10 Si 0.89 21.41 29.61 -169.99 -5.03 16.38 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.15 2.96 2.12 -68.43 -0.14 2.82 16 15 H 0.05 1.06 4.91 -51.93 -0.26 0.80 16 16 C -0.11 -2.26 4.77 -26.77 -0.13 -2.39 16 17 C -0.08 -1.36 2.82 -91.58 -0.26 -1.62 16 18 C -0.15 -2.17 5.08 -28.31 -0.14 -2.32 16 19 C 0.08 1.21 5.38 -6.12 -0.03 1.17 16 20 N -0.56 -9.04 4.62 -239.20 -1.11 -10.14 16 21 C 0.07 1.00 5.95 -4.57 -0.03 0.98 16 22 C -0.14 -1.99 5.35 -27.89 -0.15 -2.14 16 23 C 0.06 1.21 5.23 -4.14 -0.02 1.19 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.10 2.60 5.33 -51.93 -0.28 2.32 16 32 H 0.01 0.33 8.04 -51.93 -0.42 -0.09 16 33 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.06 1.39 7.34 -51.93 -0.38 1.01 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.08 6.23 -51.93 -0.32 0.76 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.02 7.29 -51.93 -0.38 0.64 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.90 7.84 -51.93 -0.41 0.50 16 45 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.07 1.41 6.04 -51.93 -0.31 1.09 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -26.93 335.99 -10.50 -37.43 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.58 Total: 2.06 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -1.08 Total: -12.12 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.87 Total: -48.81 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.93 -10.50 -37.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254863818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.365 kcal (2) G-P(sol) polarization free energy of solvation -26.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds