Wall clock time and date at job start Mon Mar 30 2020 01:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47157 * 2 1 4 4 C 1.53003 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47236 * 179.97438 * 4 3 2 6 6 C 1.36928 * 120.00267 * 264.52077 * 5 4 3 7 7 H 1.08007 * 120.00393 * 146.50103 * 6 5 4 8 8 C 1.38808 * 120.00125 * 326.50073 * 6 5 4 9 9 N 1.31625 * 120.00143 * 337.38188 * 8 6 5 10 10 Si 1.86802 * 120.00025 * 157.38210 * 8 6 5 11 11 H 1.48501 * 109.47329 * 90.00178 * 10 8 6 12 12 H 1.48506 * 109.47085 * 209.99933 * 10 8 6 13 13 H 1.48498 * 109.47296 * 329.99779 * 10 8 6 14 14 C 1.46500 * 119.99631 * 84.52013 * 5 4 3 15 15 H 1.09002 * 108.91895 * 358.69125 * 14 5 4 16 16 C 1.52874 * 108.93532 * 117.30140 * 14 5 4 17 17 C 1.53047 * 109.10570 * 184.72948 * 16 14 5 18 18 C 1.51838 * 108.56814 * 30.95552 * 17 16 14 19 19 C 1.51031 * 112.52759 * 274.34189 * 18 17 16 20 20 N 1.44463 * 112.28456 * 16.45896 * 19 18 17 21 21 C 1.46930 * 113.46441 * 297.67622 * 20 19 18 22 22 C 1.51485 * 111.83289 * 48.74057 * 21 20 19 23 23 C 1.47124 * 116.72335 * 67.19046 * 20 19 18 24 24 H 1.08994 * 109.47050 * 300.00163 * 1 2 3 25 25 H 1.08996 * 109.46933 * 60.00325 * 1 2 3 26 26 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47433 * 239.99707 * 2 1 3 28 28 H 1.09004 * 109.47095 * 120.00278 * 2 1 3 29 29 H 1.09000 * 109.47188 * 59.99558 * 3 2 1 30 30 H 1.09001 * 109.47370 * 299.99597 * 3 2 1 31 31 H 1.09000 * 109.47094 * 59.99874 * 4 3 2 32 32 H 1.08996 * 109.47205 * 299.99882 * 4 3 2 33 33 H 0.96995 * 120.00243 * 180.02562 * 9 8 6 34 34 H 1.08999 * 110.05450 * 64.52757 * 16 14 5 35 35 H 1.08995 * 109.00864 * 304.30717 * 16 14 5 36 36 H 1.09006 * 108.14216 * 148.12521 * 17 16 14 37 37 H 1.09006 * 108.97575 * 35.32096 * 18 17 16 38 38 H 1.08997 * 108.97765 * 154.01985 * 18 17 16 39 39 H 1.09003 * 109.37745 * 255.49572 * 19 18 17 40 40 H 1.08999 * 108.63683 * 136.91818 * 19 18 17 41 41 H 1.09006 * 109.00998 * 288.13514 * 21 20 19 42 42 H 1.08996 * 108.94625 * 169.30157 * 21 20 19 43 43 H 1.09004 * 108.71593 * 246.25961 * 22 21 20 44 44 H 1.09000 * 108.62089 * 128.16859 * 22 21 20 45 45 H 1.08991 * 109.24060 * 84.24084 * 23 20 19 46 46 H 1.09000 * 109.23793 * 203.64103 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3939 3.4308 -1.1806 7 1 4.2316 4.4910 -1.3079 8 6 4.9425 2.6837 -2.2138 9 7 5.5471 1.5440 -1.9529 10 14 4.8229 3.2957 -3.9747 11 1 6.0057 4.1373 -4.2877 12 1 4.7822 2.1353 -4.9004 13 1 3.5857 4.1011 -4.1358 14 6 4.1878 3.5553 1.2626 15 1 3.8526 2.9147 2.0783 16 6 5.6589 3.9076 1.4833 17 6 5.8157 4.5672 2.8555 18 6 4.7650 3.9944 3.7901 19 6 3.4431 4.7175 3.6874 20 7 3.3482 5.5178 2.4884 21 6 4.3491 6.5913 2.4208 22 6 5.7429 6.0821 2.7252 23 6 3.3020 4.7912 1.2100 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9288 0.8908 33 1 5.9308 1.0221 -2.6749 34 1 5.9992 4.5941 0.7081 35 1 6.2519 2.9938 1.4483 36 1 6.7987 4.3057 3.2474 37 1 4.6128 2.9421 3.5499 38 1 5.1227 4.0738 4.8167 39 1 3.3171 5.3658 4.5546 40 1 2.6415 3.9790 3.6825 41 1 4.0885 7.3657 3.1425 42 1 4.3393 7.0218 1.4195 43 1 6.0828 6.5301 3.6590 44 1 6.4112 6.3967 1.9237 45 1 2.2750 4.4886 1.0058 46 1 3.6481 5.4473 0.4113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254863818.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:40 Heat of formation + Delta-G solvation = -2.039230 kcal Electronic energy + Delta-G solvation = -22389.740959 eV Core-core repulsion = 19506.500608 eV Total energy + Delta-G solvation = -2883.240351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56649 -37.92356 -35.42393 -34.35504 -33.72656 -32.25062 -31.36414 -29.11123 -26.44231 -26.17401 -24.87246 -24.10293 -22.85409 -21.67786 -20.95911 -18.84664 -18.32004 -17.46339 -17.13792 -16.53669 -16.16732 -15.90584 -15.24704 -14.92925 -14.80309 -14.33381 -14.17162 -13.84702 -13.76485 -13.63939 -13.44538 -13.33940 -13.03719 -12.92977 -12.77963 -12.66186 -12.37612 -12.19961 -11.82077 -11.75088 -11.71201 -11.66338 -11.33847 -11.24544 -11.18978 -11.05119 -10.85231 -10.42977 -9.04682 -8.45762 -7.77507 -5.33217 1.42293 1.46136 1.54538 2.51500 3.10867 3.27731 3.59814 3.76299 3.91946 4.02080 4.18727 4.29332 4.32218 4.35678 4.39407 4.44667 4.46726 4.55275 4.64202 4.65031 4.69917 4.76835 4.93679 4.96785 5.03692 5.04472 5.10292 5.12925 5.17396 5.19467 5.22790 5.31519 5.33796 5.34940 5.38726 5.47742 5.58153 5.60376 5.61882 5.72369 5.91913 6.29928 6.50682 6.58702 7.21526 7.94222 8.44374 9.18446 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.008127 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.756899 B = 3444.494054 C = 4640.434249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.118 4.118 4 C 0.148 3.852 5 N -0.596 5.596 6 C -0.243 4.243 7 H 0.054 0.946 8 C -0.041 4.041 9 N -0.919 5.919 10 Si 0.946 3.054 11 H -0.288 1.288 12 H -0.293 1.293 13 H -0.273 1.273 14 C 0.148 3.852 15 H 0.058 0.942 16 C -0.105 4.105 17 C -0.080 4.080 18 C -0.144 4.144 19 C 0.081 3.919 20 N -0.562 5.562 21 C 0.066 3.934 22 C -0.134 4.134 23 C 0.080 3.920 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.010 0.990 33 H 0.248 0.752 34 H 0.036 0.964 35 H 0.023 0.977 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 4.578 11.249 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C -0.157 4.157 4 C 0.022 3.978 5 N -0.316 5.316 6 C -0.374 4.374 7 H 0.072 0.928 8 C -0.237 4.237 9 N -0.564 5.564 10 Si 0.775 3.225 11 H -0.215 1.215 12 H -0.220 1.220 13 H -0.199 1.199 14 C 0.041 3.959 15 H 0.076 0.924 16 C -0.144 4.144 17 C -0.100 4.100 18 C -0.183 4.183 19 C -0.048 4.048 20 N -0.283 5.283 21 C -0.061 4.061 22 C -0.173 4.173 23 C -0.048 4.048 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.274 4.658 11.195 13.223 hybrid contribution 1.273 -0.537 -1.573 2.094 sum -4.001 4.121 9.622 11.206 Atomic orbital electron populations 1.21708 0.94538 1.01972 1.01687 1.21436 0.96750 0.96278 1.01167 1.21979 0.97755 0.96188 0.99822 1.20899 0.91273 0.85893 0.99738 1.44152 1.74061 1.11622 1.01780 1.19078 1.33376 0.93606 0.91303 0.92822 1.25621 0.97785 0.98435 1.01881 1.70129 1.38047 1.16935 1.31338 0.85615 0.77950 0.77150 0.81812 1.21462 1.21967 1.19862 1.21115 0.93107 0.93647 0.88042 0.92429 1.21898 0.98147 0.98323 0.96070 1.20609 0.99129 0.95544 0.94736 1.21672 0.96867 0.99930 0.99870 1.21051 0.95544 0.96268 0.91897 1.59729 1.50007 1.16531 1.02075 1.21849 0.88809 0.93603 1.01886 1.21581 0.98858 0.94567 1.02337 1.22113 0.98464 0.94575 0.89691 0.92334 0.93358 0.91571 0.93518 0.92061 0.93444 0.94519 0.91456 0.97151 0.94316 0.94484 0.95783 0.91841 0.93082 0.90227 0.88929 0.91726 0.89255 0.92453 0.90141 0.92905 0.92857 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.03 16 2 C -0.12 -3.89 5.93 30.59 0.18 -3.71 16 3 C -0.12 -4.68 5.54 30.59 0.17 -4.51 16 4 C 0.15 7.07 5.17 86.38 0.45 7.51 16 5 N -0.60 -29.28 2.34 -679.85 -1.59 -30.87 16 6 C -0.24 -13.13 8.39 84.03 0.71 -12.43 16 7 H 0.05 2.92 6.84 -2.91 -0.02 2.90 16 8 C -0.04 -2.28 4.91 84.86 0.42 -1.86 16 9 N -0.92 -53.98 11.34 21.65 0.25 -53.74 16 10 Si 0.95 45.19 29.61 68.60 2.03 47.22 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 13 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 14 C 0.15 6.11 2.12 44.67 0.09 6.20 16 15 H 0.06 2.32 4.91 -2.39 -0.01 2.31 16 16 C -0.10 -4.29 4.77 30.57 0.15 -4.14 16 17 C -0.08 -2.45 2.82 -11.42 -0.03 -2.48 16 18 C -0.14 -3.85 5.08 29.57 0.15 -3.70 16 19 C 0.08 2.07 5.38 86.12 0.46 2.53 16 20 N -0.56 -16.83 4.62 -910.70 -4.21 -21.04 16 21 C 0.07 1.76 5.95 85.80 0.51 2.27 16 22 C -0.13 -3.53 5.35 29.84 0.16 -3.37 16 23 C 0.08 3.02 5.23 85.98 0.45 3.47 16 24 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 25 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 3.71 5.33 -2.39 -0.01 3.69 16 32 H 0.01 0.48 8.04 -2.39 -0.02 0.46 16 33 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.04 1.67 7.34 -2.39 -0.02 1.65 16 35 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.05 1.54 6.23 -2.38 -0.01 1.53 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 1.69 8.06 -2.39 -0.02 1.68 16 41 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.06 1.64 7.29 -2.39 -0.02 1.63 16 43 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.05 1.48 7.84 -2.39 -0.02 1.46 16 45 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 46 H 0.05 2.07 6.04 -2.39 -0.01 2.05 16 Total: -1.00 -59.98 335.99 1.96 -58.01 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.91 Total: 17.65 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 4.57 Total: -17.24 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -5.56 Total: -105.64 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -59.98 1.96 -58.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254863818.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.975 kcal (2) G-P(sol) polarization free energy of solvation -59.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds