Wall clock time and date at job start Mon Mar 30 2020 01:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47033 * 2 1 4 4 H 1.09001 * 109.46971 * 55.48153 * 3 2 1 5 5 C 1.50692 * 109.46858 * 175.48568 * 3 2 1 6 6 H 1.07997 * 120.00194 * 120.00531 * 5 3 2 7 7 C 1.37878 * 120.00277 * 299.99420 * 5 3 2 8 8 N 1.31518 * 119.99773 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00055 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47298 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46896 * 120.00310 * 9 7 5 12 12 H 1.48505 * 109.47108 * 240.00112 * 9 7 5 13 13 N 1.46898 * 109.46974 * 295.48557 * 3 2 1 14 14 C 1.46905 * 111.00011 * 151.94588 * 13 3 2 15 15 C 1.53118 * 109.52197 * 207.59596 * 14 13 3 16 16 C 1.53035 * 109.27457 * 182.38150 * 15 14 13 17 17 N 1.46839 * 109.52894 * 59.17710 * 16 15 14 18 18 C 1.46902 * 111.00079 * 174.16358 * 17 16 15 19 19 C 1.53783 * 113.61360 * 175.00068 * 18 17 16 20 20 C 1.53775 * 87.08396 * 139.97739 * 19 18 17 21 21 C 1.53780 * 87.17357 * 334.52476 * 20 19 18 22 22 C 1.46848 * 111.19595 * 298.25538 * 17 16 15 23 23 C 1.53045 * 109.52322 * 61.74352 * 22 17 16 24 24 H 1.09002 * 109.46933 * 177.79836 * 1 2 3 25 25 H 1.08999 * 109.46844 * 297.79311 * 1 2 3 26 26 H 1.08999 * 109.47174 * 57.80164 * 1 2 3 27 27 H 1.08992 * 109.47093 * 239.99833 * 2 1 3 28 28 H 1.08999 * 109.46864 * 119.99677 * 2 1 3 29 29 H 0.96994 * 119.99839 * 179.97438 * 8 7 5 30 30 H 1.00903 * 111.00044 * 27.99391 * 13 3 2 31 31 H 1.08999 * 109.52259 * 327.71836 * 14 13 3 32 32 H 1.08997 * 109.50480 * 62.43421 * 15 14 13 33 33 H 1.09004 * 109.49974 * 302.31332 * 15 14 13 34 34 H 1.09008 * 109.45958 * 299.15614 * 16 15 14 35 35 H 1.09003 * 109.45398 * 179.18762 * 16 15 14 36 36 H 1.08993 * 112.90851 * 43.74387 * 18 17 16 37 37 H 1.09000 * 113.61673 * 25.42996 * 19 18 17 38 38 H 1.09002 * 113.61226 * 254.52581 * 19 18 17 39 39 H 1.09004 * 113.61327 * 89.11225 * 20 19 18 40 40 H 1.08995 * 113.61774 * 219.93730 * 20 19 18 41 41 H 1.09002 * 113.61782 * 140.02398 * 21 20 19 42 42 H 1.09007 * 113.61270 * 270.92817 * 21 20 19 43 43 H 1.08997 * 109.46233 * 181.75416 * 22 17 16 44 44 H 1.08995 * 109.46955 * 301.72829 * 22 17 16 45 45 H 1.08994 * 109.50295 * 180.87992 * 23 22 17 46 46 H 1.09003 * 109.49906 * 60.75918 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6121 1.9792 0.8468 5 6 3.5428 1.4440 0.1118 6 1 4.1419 1.8908 -0.6678 7 6 4.1530 0.8750 1.2096 8 7 3.4235 0.3306 2.1588 9 14 6.0159 0.8775 1.3485 10 1 6.6001 1.5468 0.1586 11 1 6.4197 1.6095 2.5757 12 1 6.5086 -0.5215 1.4218 13 7 1.6414 2.1028 -1.2502 14 6 1.4936 3.5515 -1.0566 15 6 0.4763 4.1008 -2.0605 16 6 0.3708 5.6183 -1.8938 17 7 1.6867 6.2296 -2.1191 18 6 1.5958 7.6957 -2.1037 19 6 2.9593 8.3986 -2.2125 20 6 2.2733 9.4142 -3.1414 21 6 1.2594 8.3077 -3.4768 22 6 2.6688 5.7529 -1.1368 23 6 2.8431 4.2393 -1.2810 24 1 -0.3633 -1.0269 -0.0395 25 1 -0.3633 0.4792 0.9091 26 1 -0.3633 0.5476 -0.8696 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8528 -0.0699 2.9309 30 1 0.7931 1.6987 -1.6180 31 1 1.1478 3.7500 -0.0421 32 1 -0.4973 3.6459 -1.8779 33 1 0.8031 3.8679 -3.0740 34 1 0.0307 5.8500 -0.8844 35 1 -0.3422 6.0143 -2.6170 36 1 0.9732 8.0737 -1.2929 37 1 3.7216 7.7983 -2.7091 38 1 3.3044 8.8300 -1.2729 39 1 1.8359 10.2620 -2.6142 40 1 2.8881 9.7147 -3.9897 41 1 0.2330 8.6657 -3.5573 42 1 1.5579 7.6825 -4.3184 43 1 3.6249 6.2467 -1.3102 44 1 2.3180 5.9839 -0.1310 45 1 3.5603 3.8835 -0.5414 46 1 3.2070 4.0087 -2.2822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:59 Heat of formation + Delta-G solvation = 12.510174 kcal Electronic energy + Delta-G solvation = -21392.806724 eV Core-core repulsion = 18510.197283 eV Total energy + Delta-G solvation = -2882.609441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.64096 -37.61726 -35.56691 -32.72637 -31.49248 -30.52254 -28.98771 -26.44907 -25.73527 -24.42619 -22.80349 -22.48459 -21.65917 -19.48702 -19.32301 -19.09580 -16.48199 -16.19805 -15.44981 -14.86364 -14.69479 -14.51150 -14.00139 -13.81195 -13.40823 -12.91140 -12.84129 -12.61455 -12.43886 -12.28544 -12.05295 -11.75897 -11.57426 -11.11093 -11.06070 -10.88458 -10.80026 -10.67261 -10.61453 -10.42921 -10.28251 -10.21626 -9.98165 -9.72811 -9.56460 -9.28921 -8.93936 -8.29700 -8.11697 -7.16163 -5.92413 -3.95112 3.33368 3.41642 3.46786 4.07014 4.48121 4.52998 4.65328 4.79693 4.88814 5.11095 5.21614 5.35837 5.37933 5.48643 5.58783 5.61771 5.74850 5.78928 5.81387 5.82613 5.89533 5.94816 6.07742 6.15012 6.17249 6.17889 6.21044 6.29595 6.38778 6.43495 6.50625 6.58997 6.86326 6.89007 7.09774 7.13368 7.23869 7.38295 7.39182 7.56980 7.82875 7.99067 8.40319 8.46820 8.83647 9.13254 9.69251 11.13143 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.005052 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.541184 B = 5540.608799 C = 6633.353164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.485 4.485 6 H 0.065 0.935 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.682 5.682 14 C 0.100 3.900 15 C -0.120 4.120 16 C 0.063 3.937 17 N -0.525 5.525 18 C 0.052 3.948 19 C -0.133 4.133 20 C -0.143 4.143 21 C -0.125 4.125 22 C 0.055 3.945 23 C -0.102 4.102 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.040 0.960 28 H 0.098 0.902 29 H 0.257 0.743 30 H 0.317 0.683 31 H 0.029 0.971 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.026 0.974 45 H 0.086 0.914 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.461 13.253 -7.850 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.524 4.524 6 H 0.083 0.917 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.212 1.212 13 N -0.314 5.314 14 C -0.010 4.010 15 C -0.158 4.158 16 C -0.066 4.066 17 N -0.249 5.249 18 C -0.057 4.057 19 C -0.170 4.170 20 C -0.181 4.181 21 C -0.163 4.163 22 C -0.072 4.072 23 C -0.140 4.140 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.135 0.865 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.044 0.956 45 H 0.104 0.896 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.627 13.043 -8.363 16.170 hybrid contribution -0.205 0.189 1.621 1.645 sum -4.832 13.232 -6.742 15.617 Atomic orbital electron populations 1.21885 0.99734 0.99453 0.99654 1.21795 0.91117 1.00630 1.03034 1.19228 0.95443 0.89789 0.84436 0.98154 1.21304 0.91179 1.35499 1.04442 0.91688 1.24971 0.97943 0.95829 0.95950 1.69886 1.34572 1.39545 1.09834 0.86549 0.86138 0.77582 0.77801 1.19722 1.21359 1.21221 1.60730 1.36718 1.01160 1.32782 1.21389 0.94284 0.89805 0.95563 1.21836 0.98728 0.93855 1.01370 1.21981 0.90463 0.95271 0.98842 1.62213 1.07902 1.04480 1.50341 1.23198 0.97558 0.87735 0.97160 1.23015 0.96776 0.97440 0.99808 1.22724 0.98827 0.96704 0.99852 1.23000 0.98567 0.96970 0.97737 1.22179 0.95252 0.97436 0.92373 1.21652 0.98279 0.90751 1.03314 0.94470 0.94005 0.94596 0.94084 0.88332 0.93277 0.86493 0.95270 0.92492 0.90674 0.95494 0.91399 0.92154 0.89122 0.91850 0.90596 0.91338 0.92156 0.89221 0.91015 0.95592 0.89556 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.78 37.16 0.36 -2.55 16 2 C -0.13 -3.00 5.34 -26.73 -0.14 -3.14 16 3 C 0.22 5.40 2.04 -68.87 -0.14 5.26 16 4 H 0.00 0.02 7.34 -51.93 -0.38 -0.36 16 5 C -0.49 -13.16 7.47 -34.44 -0.26 -13.42 16 6 H 0.06 1.79 6.94 -52.49 -0.36 1.43 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.54 11.29 55.43 0.63 -24.92 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.68 -14.41 6.17 -100.83 -0.62 -15.04 16 14 C 0.10 1.89 2.57 -67.59 -0.17 1.72 16 15 C -0.12 -1.83 5.33 -26.65 -0.14 -1.98 16 16 C 0.06 0.87 5.44 -3.84 -0.02 0.85 16 17 N -0.52 -7.34 4.64 -225.55 -1.05 -8.39 16 18 C 0.05 0.61 3.30 -66.75 -0.22 0.39 16 19 C -0.13 -1.41 6.44 -25.92 -0.17 -1.57 16 20 C -0.14 -1.29 8.07 -25.92 -0.21 -1.50 16 21 C -0.12 -1.26 7.90 -25.77 -0.20 -1.46 16 22 C 0.06 0.86 5.23 -3.83 -0.02 0.84 16 23 C -0.10 -1.89 5.22 -26.65 -0.14 -2.03 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.63 6.36 -51.93 -0.33 0.30 16 27 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.10 2.62 5.96 -51.93 -0.31 2.31 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.32 6.18 5.99 -39.29 -0.24 5.94 16 31 H 0.03 0.61 7.35 -51.93 -0.38 0.23 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 36 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.09 1.03 7.61 -51.93 -0.39 0.64 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 1.04 6.53 -51.93 -0.34 0.71 16 44 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 1.86 6.30 -51.93 -0.33 1.53 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -27.55 343.14 -11.00 -38.54 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -8.54 Total: 5.42 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.57 Total: -17.23 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -1.04 Total: -48.34 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.55 -11.00 -38.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.053 kcal (2) G-P(sol) polarization free energy of solvation -27.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds