Wall clock time and date at job start Mon Mar 30 2020 01:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47033 * 2 1 4 4 H 1.09001 * 109.46971 * 55.48153 * 3 2 1 5 5 C 1.50692 * 109.46858 * 175.48568 * 3 2 1 6 6 H 1.07997 * 120.00194 * 120.00531 * 5 3 2 7 7 C 1.37878 * 120.00277 * 299.99420 * 5 3 2 8 8 N 1.31518 * 119.99773 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00055 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47298 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46896 * 120.00310 * 9 7 5 12 12 H 1.48505 * 109.47108 * 240.00112 * 9 7 5 13 13 N 1.46898 * 109.46974 * 295.48557 * 3 2 1 14 14 C 1.46905 * 111.00011 * 151.94588 * 13 3 2 15 15 C 1.53118 * 109.52197 * 207.59596 * 14 13 3 16 16 C 1.53035 * 109.27457 * 182.38150 * 15 14 13 17 17 N 1.46839 * 109.52894 * 59.17710 * 16 15 14 18 18 C 1.46902 * 111.00079 * 174.16358 * 17 16 15 19 19 C 1.53783 * 113.61360 * 175.00068 * 18 17 16 20 20 C 1.53775 * 87.08396 * 139.97739 * 19 18 17 21 21 C 1.53780 * 87.17357 * 334.52476 * 20 19 18 22 22 C 1.46848 * 111.19595 * 298.25538 * 17 16 15 23 23 C 1.53045 * 109.52322 * 61.74352 * 22 17 16 24 24 H 1.09002 * 109.46933 * 177.79836 * 1 2 3 25 25 H 1.08999 * 109.46844 * 297.79311 * 1 2 3 26 26 H 1.08999 * 109.47174 * 57.80164 * 1 2 3 27 27 H 1.08992 * 109.47093 * 239.99833 * 2 1 3 28 28 H 1.08999 * 109.46864 * 119.99677 * 2 1 3 29 29 H 0.96994 * 119.99839 * 179.97438 * 8 7 5 30 30 H 1.00903 * 111.00044 * 27.99391 * 13 3 2 31 31 H 1.08999 * 109.52259 * 327.71836 * 14 13 3 32 32 H 1.08997 * 109.50480 * 62.43421 * 15 14 13 33 33 H 1.09004 * 109.49974 * 302.31332 * 15 14 13 34 34 H 1.09008 * 109.45958 * 299.15614 * 16 15 14 35 35 H 1.09003 * 109.45398 * 179.18762 * 16 15 14 36 36 H 1.08993 * 112.90851 * 43.74387 * 18 17 16 37 37 H 1.09000 * 113.61673 * 25.42996 * 19 18 17 38 38 H 1.09002 * 113.61226 * 254.52581 * 19 18 17 39 39 H 1.09004 * 113.61327 * 89.11225 * 20 19 18 40 40 H 1.08995 * 113.61774 * 219.93730 * 20 19 18 41 41 H 1.09002 * 113.61782 * 140.02398 * 21 20 19 42 42 H 1.09007 * 113.61270 * 270.92817 * 21 20 19 43 43 H 1.08997 * 109.46233 * 181.75416 * 22 17 16 44 44 H 1.08995 * 109.46955 * 301.72829 * 22 17 16 45 45 H 1.08994 * 109.50295 * 180.87992 * 23 22 17 46 46 H 1.09003 * 109.49906 * 60.75918 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6121 1.9792 0.8468 5 6 3.5428 1.4440 0.1118 6 1 4.1419 1.8908 -0.6678 7 6 4.1530 0.8750 1.2096 8 7 3.4235 0.3306 2.1588 9 14 6.0159 0.8775 1.3485 10 1 6.6001 1.5468 0.1586 11 1 6.4197 1.6095 2.5757 12 1 6.5086 -0.5215 1.4218 13 7 1.6414 2.1028 -1.2502 14 6 1.4936 3.5515 -1.0566 15 6 0.4763 4.1008 -2.0605 16 6 0.3708 5.6183 -1.8938 17 7 1.6867 6.2296 -2.1191 18 6 1.5958 7.6957 -2.1037 19 6 2.9593 8.3986 -2.2125 20 6 2.2733 9.4142 -3.1414 21 6 1.2594 8.3077 -3.4768 22 6 2.6688 5.7529 -1.1368 23 6 2.8431 4.2393 -1.2810 24 1 -0.3633 -1.0269 -0.0395 25 1 -0.3633 0.4792 0.9091 26 1 -0.3633 0.5476 -0.8696 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8528 -0.0699 2.9309 30 1 0.7931 1.6987 -1.6180 31 1 1.1478 3.7500 -0.0421 32 1 -0.4973 3.6459 -1.8779 33 1 0.8031 3.8679 -3.0740 34 1 0.0307 5.8500 -0.8844 35 1 -0.3422 6.0143 -2.6170 36 1 0.9732 8.0737 -1.2929 37 1 3.7216 7.7983 -2.7091 38 1 3.3044 8.8300 -1.2729 39 1 1.8359 10.2620 -2.6142 40 1 2.8881 9.7147 -3.9897 41 1 0.2330 8.6657 -3.5573 42 1 1.5579 7.6825 -4.3184 43 1 3.6249 6.2467 -1.3102 44 1 2.3180 5.9839 -0.1310 45 1 3.5603 3.8835 -0.5414 46 1 3.2070 4.0087 -2.2822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:59 Heat of formation + Delta-G solvation = -3.944316 kcal Electronic energy + Delta-G solvation = -21393.520244 eV Core-core repulsion = 18510.197283 eV Total energy + Delta-G solvation = -2883.322961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72402 -38.95551 -37.12237 -34.47463 -33.27762 -31.82774 -30.52590 -28.35592 -26.59478 -25.62467 -24.50294 -23.77634 -22.97755 -21.36008 -20.57699 -20.16376 -18.29846 -17.54258 -16.78717 -16.38438 -16.20983 -15.71005 -15.64285 -15.26888 -14.79676 -14.58645 -14.14039 -14.11871 -13.70655 -13.41598 -13.28911 -13.18618 -13.01671 -12.79851 -12.62853 -12.51221 -12.25774 -12.08444 -11.97949 -11.93479 -11.61533 -11.56130 -11.41476 -11.25165 -11.00822 -10.98542 -10.77857 -10.39509 -9.24596 -8.98381 -8.04040 -6.13814 1.39280 1.41905 1.53448 2.45057 2.97748 3.20932 3.57215 3.66237 3.84717 3.93027 3.99250 4.07175 4.10628 4.34011 4.36961 4.49122 4.53860 4.56804 4.59203 4.67511 4.72239 4.75705 4.85269 4.90174 4.91521 4.97932 5.04620 5.09403 5.12009 5.14170 5.17760 5.24324 5.33811 5.38908 5.41737 5.52029 5.56698 5.66217 5.79795 5.93981 6.15893 6.31593 6.40812 6.58281 6.99911 7.05754 7.54347 8.99626 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.021102 B = 0.005052 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.541184 B = 5540.608799 C = 6633.353164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.227 3.773 4 H -0.036 1.036 5 C -0.497 4.497 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.923 5.923 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.281 1.281 13 N -0.682 5.682 14 C 0.100 3.900 15 C -0.109 4.109 16 C 0.065 3.935 17 N -0.528 5.528 18 C 0.043 3.957 19 C -0.136 4.136 20 C -0.132 4.132 21 C -0.119 4.119 22 C 0.066 3.934 23 C -0.094 4.094 24 H 0.058 0.942 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.258 0.742 30 H 0.328 0.672 31 H 0.005 0.995 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.022 0.978 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.016 0.984 45 H 0.049 0.951 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.200 14.670 -9.352 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C 0.118 3.882 4 H -0.019 1.019 5 C -0.536 4.536 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.564 5.564 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.314 5.314 14 C -0.011 4.011 15 C -0.147 4.147 16 C -0.063 4.063 17 N -0.253 5.253 18 C -0.065 4.065 19 C -0.174 4.174 20 C -0.169 4.169 21 C -0.156 4.156 22 C -0.062 4.062 23 C -0.133 4.133 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.147 0.853 31 H 0.023 0.977 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.041 0.959 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.034 0.966 45 H 0.068 0.932 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.377 14.472 -9.883 18.331 hybrid contribution 0.019 -0.232 2.080 2.093 sum -5.358 14.240 -7.803 17.099 Atomic orbital electron populations 1.21750 0.96327 1.01226 1.00298 1.21623 0.94202 0.99177 1.01179 1.18982 0.94180 0.90430 0.84586 1.01876 1.21524 0.92591 1.35227 1.04254 0.92773 1.25663 1.01983 0.95647 0.95739 1.70015 1.36057 1.40137 1.10200 0.85620 0.81335 0.77626 0.77752 1.19400 1.20994 1.20727 1.60637 1.37509 1.02462 1.30794 1.21427 0.95551 0.88562 0.95522 1.21739 0.98038 0.95103 0.99809 1.21996 0.90868 0.94042 0.99400 1.62225 1.07606 1.06192 1.49258 1.23384 0.98626 0.86022 0.98501 1.23026 0.96085 0.97881 1.00413 1.22700 0.98134 0.96415 0.99690 1.22956 0.99667 0.96914 0.96112 1.21976 0.96533 0.95199 0.92485 1.21492 0.97274 0.93101 1.01440 0.92259 0.94713 0.92401 0.94471 0.91512 0.93301 0.85278 0.97735 0.90965 0.90603 0.95932 0.88875 0.91928 0.90110 0.91590 0.89252 0.90412 0.90849 0.89946 0.90059 0.96557 0.93232 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 9.78 71.98 0.70 -4.55 16 2 C -0.12 -5.90 5.34 30.60 0.16 -5.73 16 3 C 0.23 11.54 2.04 44.17 0.09 11.63 16 4 H -0.04 -2.09 7.34 -2.39 -0.02 -2.11 16 5 C -0.50 -27.84 7.47 25.60 0.19 -27.65 16 6 H 0.05 3.09 6.94 -2.91 -0.02 3.07 16 7 C 0.01 0.40 5.29 84.65 0.45 0.85 16 8 N -0.92 -53.97 11.29 21.45 0.24 -53.72 16 9 Si 0.95 44.91 29.54 68.60 2.03 46.93 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 13 N -0.68 -29.11 6.17 -472.91 -2.92 -32.03 16 14 C 0.10 3.81 2.57 44.99 0.12 3.93 16 15 C -0.11 -3.17 5.33 30.65 0.16 -3.01 16 16 C 0.07 1.67 5.44 86.33 0.47 2.14 16 17 N -0.53 -14.03 4.64 -867.49 -4.02 -18.05 16 18 C 0.04 0.92 3.30 45.54 0.15 1.07 16 19 C -0.14 -2.64 6.44 31.12 0.20 -2.44 16 20 C -0.13 -1.99 8.07 31.12 0.25 -1.73 16 21 C -0.12 -2.06 7.90 31.21 0.25 -1.81 16 22 C 0.07 2.07 5.23 86.33 0.45 2.52 16 23 C -0.09 -3.62 5.22 30.65 0.16 -3.46 16 24 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.92 6.36 -2.39 -0.02 1.90 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 3.65 5.96 -2.39 -0.01 3.63 16 29 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.33 12.50 5.99 -89.69 -0.54 11.97 16 31 H 0.00 0.20 7.35 -2.39 -0.02 0.19 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.09 1.97 8.12 -2.39 -0.02 1.95 16 36 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 37 H 0.08 1.73 7.61 -2.39 -0.02 1.71 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.08 2.36 6.53 -2.39 -0.02 2.34 16 44 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.05 2.24 6.30 -2.39 -0.02 2.22 16 46 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -60.83 343.14 -0.48 -61.31 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.39 Total: 23.80 kcal Atomic # 6 Polarization: -32.04 SS G_CDS: 3.81 Total: -28.24 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -6.70 Total: -103.81 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -60.83 -0.48 -61.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.362 kcal (2) G-P(sol) polarization free energy of solvation -60.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds