Wall clock time and date at job start Mon Mar 30 2020 01:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46787 * 2 1 4 4 H 1.08999 * 109.46881 * 303.20667 * 3 2 1 5 5 C 1.50703 * 109.46897 * 183.20604 * 3 2 1 6 6 H 1.07994 * 120.00213 * 239.99565 * 5 3 2 7 7 C 1.37878 * 120.00029 * 60.00553 * 5 3 2 8 8 N 1.31512 * 119.99851 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00167 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47573 * 89.99575 * 9 7 5 11 11 H 1.48500 * 109.46962 * 209.99467 * 9 7 5 12 12 H 1.48504 * 109.46982 * 329.99246 * 9 7 5 13 13 N 1.46900 * 109.47383 * 63.20860 * 3 2 1 14 14 C 1.46848 * 110.99768 * 66.79485 * 13 3 2 15 15 C 1.53041 * 109.52192 * 185.84069 * 14 13 3 16 16 C 1.53120 * 109.27814 * 300.81986 * 15 14 13 17 17 N 1.46893 * 109.52437 * 297.68369 * 16 15 14 18 18 C 1.52998 * 109.52206 * 177.55743 * 16 15 14 19 19 C 1.52995 * 109.47181 * 180.12909 * 18 16 15 20 20 C 1.53004 * 117.50097 * 243.62628 * 19 18 16 21 21 C 1.53003 * 117.50234 * 175.00050 * 19 18 16 22 22 C 1.53123 * 109.21085 * 57.62210 * 16 15 14 23 23 C 1.46845 * 111.00254 * 191.00496 * 13 3 2 24 24 H 1.09001 * 109.47157 * 184.78014 * 1 2 3 25 25 H 1.08997 * 109.47219 * 304.77708 * 1 2 3 26 26 H 1.08993 * 109.47451 * 64.77809 * 1 2 3 27 27 H 1.08994 * 109.47531 * 240.00222 * 2 1 3 28 28 H 1.09002 * 109.47319 * 119.99716 * 2 1 3 29 29 H 0.97001 * 120.00277 * 180.02562 * 8 7 5 30 30 H 1.09003 * 109.46442 * 65.82516 * 14 13 3 31 31 H 1.09001 * 109.45561 * 305.85032 * 14 13 3 32 32 H 1.08998 * 109.50667 * 180.87774 * 15 14 13 33 33 H 1.09002 * 109.53553 * 60.78201 * 15 14 13 34 34 H 1.00906 * 110.99483 * 59.87739 * 17 16 15 35 35 H 1.00896 * 110.99910 * 183.82100 * 17 16 15 36 36 H 1.08994 * 109.47084 * 60.12654 * 18 16 15 37 37 H 1.09005 * 109.47198 * 300.12517 * 18 16 15 38 38 H 1.09002 * 115.54978 * 29.32811 * 19 18 16 39 39 H 1.09003 * 117.49322 * 359.97438 * 20 19 18 40 40 H 1.08993 * 117.50504 * 145.02068 * 20 19 18 41 41 H 1.09002 * 117.50108 * 214.97396 * 21 19 18 42 42 H 1.08994 * 117.49603 * 0.02562 * 21 19 18 43 43 H 1.09002 * 109.50141 * 62.32039 * 22 16 15 44 44 H 1.08995 * 109.50333 * 182.43248 * 22 16 15 45 45 H 1.09007 * 109.46190 * 294.17636 * 23 13 3 46 46 H 1.09002 * 109.45922 * 54.15481 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6303 1.9726 -0.8598 5 6 3.5448 1.4433 -0.0795 6 1 4.1270 1.8961 0.7094 7 6 4.1785 0.8661 -1.1595 8 7 3.4695 0.3145 -2.1200 9 14 6.0438 0.8664 -1.2577 10 1 6.5740 -0.3589 -0.6077 11 1 6.4645 0.8929 -2.6816 12 1 6.5759 2.0656 -0.5619 13 7 1.6145 2.1123 1.2363 14 6 2.2764 1.5243 2.4079 15 6 1.7034 2.1449 3.6841 16 6 1.9276 3.6593 3.6545 17 7 3.3689 3.9418 3.6305 18 6 1.3030 4.2929 4.8992 19 6 1.5249 5.8064 4.8669 20 6 2.3845 6.4182 5.9749 21 6 0.8706 6.6401 5.9705 22 6 1.2710 4.2414 2.3997 23 6 1.8554 3.5589 1.1608 24 1 -0.3633 -1.0241 0.0856 25 1 -0.3633 0.5861 0.8441 26 1 -0.3634 0.4379 -0.9296 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.9152 -0.0920 -2.8797 30 1 3.3472 1.7215 2.3572 31 1 2.1055 0.4478 2.4191 32 1 2.2058 1.7195 4.5529 33 1 0.6352 1.9362 3.7431 34 1 3.8039 3.5332 2.8169 35 1 3.5435 4.9346 3.6735 36 1 1.7694 3.8763 5.7919 37 1 0.2336 4.0828 4.9162 38 1 1.5926 6.2505 3.8738 39 1 2.7916 5.7425 6.7271 40 1 3.0180 7.2650 5.7109 41 1 0.5083 7.6328 5.7035 42 1 0.2825 6.1103 6.7197 43 1 0.1957 4.0666 2.4372 44 1 1.4646 5.3129 2.3514 45 1 2.9282 3.7466 1.1160 46 1 1.3787 3.9602 0.2664 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:16 Heat of formation + Delta-G solvation = -1.203597 kcal Electronic energy + Delta-G solvation = -21915.141622 eV Core-core repulsion = 19031.937507 eV Total energy + Delta-G solvation = -2883.204115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86912 -38.55150 -36.77233 -34.34308 -32.99571 -31.68738 -30.49517 -29.36132 -27.53111 -24.90810 -24.34135 -23.13003 -22.97594 -21.45777 -20.71375 -19.62834 -18.17805 -17.35940 -16.85203 -16.39727 -16.01532 -15.75960 -15.39817 -15.15613 -14.97329 -14.55486 -14.12630 -14.08084 -13.48496 -13.29615 -13.21672 -12.99500 -12.88884 -12.79678 -12.49114 -12.41859 -12.28975 -12.26351 -12.06720 -11.82840 -11.56873 -11.53782 -11.35368 -11.04871 -10.95317 -10.75061 -10.56909 -10.41082 -9.46533 -8.83173 -8.00981 -6.23934 1.36435 1.39010 1.46604 2.40184 3.00599 3.16674 3.43681 3.65352 3.78978 3.90145 4.09614 4.19496 4.19916 4.34450 4.49864 4.53150 4.56528 4.64295 4.74618 4.77475 4.83182 4.87025 4.92845 4.95883 5.05514 5.05738 5.10026 5.18029 5.22585 5.26620 5.29069 5.35532 5.37254 5.43621 5.48828 5.52306 5.55321 5.66765 5.81789 6.09673 6.22519 6.37966 6.42613 6.67136 6.74871 6.98452 7.47047 8.93108 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.005441 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.962909 B = 5144.651464 C = 5859.099390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.220 3.780 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.526 5.526 14 C 0.066 3.934 15 C -0.095 4.095 16 C 0.131 3.869 17 N -0.839 5.839 18 C -0.065 4.065 19 C -0.158 4.158 20 C -0.176 4.176 21 C -0.178 4.178 22 C -0.131 4.131 23 C 0.063 3.937 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.333 0.667 35 H 0.341 0.659 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.015 0.985 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 9.334 13.714 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.250 5.250 14 C -0.062 4.062 15 C -0.134 4.134 16 C 0.038 3.962 17 N -0.370 5.370 18 C -0.103 4.103 19 C -0.176 4.176 20 C -0.213 4.213 21 C -0.215 4.215 22 C -0.171 4.171 23 C -0.065 4.065 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.033 0.967 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.291 8.759 14.285 17.572 hybrid contribution 1.892 0.336 -1.818 2.645 sum -3.399 9.095 12.467 15.802 Atomic orbital electron populations 1.21572 0.96341 0.99900 1.00551 1.21421 0.94440 0.98307 1.00130 1.19020 0.91621 0.91404 0.86722 0.98285 1.21974 0.93941 1.36943 1.05684 0.92977 1.25586 1.01628 0.95079 0.95497 1.70004 1.36275 1.38649 1.10217 0.85781 0.81798 0.78370 0.77008 1.20431 1.21137 1.19707 1.62330 1.56984 1.02354 1.03349 1.21858 0.95797 0.98285 0.90273 1.21606 1.01102 0.94327 0.96328 1.20699 0.87484 0.94457 0.93582 1.59017 1.11134 1.18562 1.48291 1.21107 1.00154 0.92397 0.96628 1.22313 1.05867 0.94501 0.94935 1.23019 0.93623 1.03181 1.01465 1.23016 0.95579 1.01347 1.01539 1.22350 1.01279 0.98994 0.94437 1.21863 0.97396 0.89413 0.97866 0.93643 0.92225 0.95029 0.92176 0.95178 0.93066 0.95991 0.92789 0.91235 0.91020 0.85351 0.84498 0.91508 0.90870 0.88223 0.89045 0.88653 0.88345 0.88546 0.91116 0.90878 0.96712 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.08 9.85 71.98 0.71 -4.37 16 2 C -0.10 -5.00 5.14 30.59 0.16 -4.84 16 3 C 0.22 10.86 1.72 44.17 0.08 10.93 16 4 H 0.00 -0.04 7.97 -2.39 -0.02 -0.06 16 5 C -0.55 -29.09 7.24 25.60 0.19 -28.91 16 6 H 0.05 2.77 5.84 -2.91 -0.02 2.75 16 7 C 0.02 1.19 5.30 84.66 0.45 1.64 16 8 N -0.91 -52.09 11.30 21.45 0.24 -51.84 16 9 Si 0.94 43.57 29.54 68.60 2.03 45.60 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.53 -21.41 3.89 -875.48 -3.41 -24.82 16 14 C 0.07 2.51 4.54 86.33 0.39 2.91 16 15 C -0.10 -2.83 5.08 30.65 0.16 -2.67 16 16 C 0.13 3.40 0.71 3.61 0.00 3.40 16 17 N -0.84 -22.97 8.80 -151.26 -1.33 -24.30 16 18 C -0.07 -1.38 4.74 30.59 0.15 -1.23 16 19 C -0.16 -2.94 4.34 -10.79 -0.05 -2.99 16 20 C -0.18 -2.98 10.18 30.60 0.31 -2.67 16 21 C -0.18 -2.82 10.25 30.60 0.31 -2.51 16 22 C -0.13 -3.66 4.78 30.65 0.15 -3.52 16 23 C 0.06 2.35 4.96 86.33 0.43 2.78 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 2.27 7.56 -2.39 -0.02 2.26 16 26 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 3.26 5.99 -2.39 -0.01 3.25 16 28 H 0.03 1.42 6.33 -2.39 -0.02 1.40 16 29 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.02 0.92 4.92 -2.39 -0.01 0.91 16 31 H 0.05 2.18 6.20 -2.39 -0.01 2.17 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.33 10.83 5.59 -89.69 -0.50 10.33 16 35 H 0.34 8.28 7.87 -89.70 -0.71 7.57 16 36 H 0.07 1.45 7.87 -2.39 -0.02 1.43 16 37 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.10 1.94 6.12 -2.39 -0.01 1.92 16 39 H 0.09 1.60 8.03 -2.39 -0.02 1.58 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 43 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.07 1.80 6.25 -2.39 -0.01 1.79 16 45 H 0.01 0.59 5.96 -2.38 -0.01 0.58 16 46 H 0.05 1.87 8.00 -2.39 -0.02 1.85 16 Total: -1.00 -56.36 335.77 0.71 -55.65 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.24 Total: 31.75 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 3.42 Total: -32.04 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -4.50 Total: -100.96 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -56.36 0.71 -55.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.450 kcal (2) G-P(sol) polarization free energy of solvation -56.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds