Wall clock time and date at job start Mon Mar 30 2020 01:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46916 * 2 1 4 4 H 1.09001 * 109.47080 * 303.64768 * 3 2 1 5 5 C 1.50703 * 109.46981 * 183.64988 * 3 2 1 6 6 H 1.07992 * 119.99809 * 244.48641 * 5 3 2 7 7 C 1.37883 * 119.99633 * 64.48743 * 5 3 2 8 8 N 1.31516 * 119.99552 * 196.00051 * 7 5 3 9 9 Si 1.86795 * 120.00321 * 16.00361 * 7 5 3 10 10 H 1.48496 * 109.47326 * 89.76609 * 9 7 5 11 11 H 1.48502 * 109.47214 * 209.77167 * 9 7 5 12 12 H 1.48501 * 109.46965 * 329.76729 * 9 7 5 13 13 N 1.46896 * 109.47425 * 63.65040 * 3 2 1 14 14 C 1.46894 * 111.00421 * 201.82590 * 13 3 2 15 15 H 1.09011 * 110.28346 * 326.57665 * 14 13 3 16 16 C 1.54251 * 110.32571 * 88.70054 * 14 13 3 17 17 C 1.54388 * 105.05857 * 118.89968 * 16 14 13 18 18 N 1.48561 * 104.59373 * 23.85391 * 17 16 14 19 19 C 1.46897 * 110.99786 * 200.95677 * 18 17 16 20 20 C 1.53003 * 109.47101 * 175.17245 * 19 18 17 21 21 C 1.53773 * 113.61727 * 271.54279 * 20 19 18 22 22 C 1.53957 * 87.02215 * 220.04662 * 21 20 19 23 23 C 1.53778 * 113.61622 * 173.93271 * 20 19 18 24 24 C 1.48554 * 104.22060 * 320.51629 * 18 17 16 25 25 H 1.09003 * 109.46927 * 54.95947 * 1 2 3 26 26 H 1.09007 * 109.47030 * 174.95381 * 1 2 3 27 27 H 1.08992 * 109.47321 * 294.95487 * 1 2 3 28 28 H 1.08998 * 109.46744 * 119.99753 * 2 1 3 29 29 H 1.09003 * 109.46981 * 239.99749 * 2 1 3 30 30 H 0.97000 * 120.00061 * 180.02562 * 8 7 5 31 31 H 1.00905 * 110.99923 * 77.86729 * 13 3 2 32 32 H 1.08999 * 110.33076 * 237.79630 * 16 14 13 33 33 H 1.09003 * 110.32820 * 0.02562 * 16 14 13 34 34 H 1.08999 * 110.41099 * 142.63208 * 17 16 14 35 35 H 1.08999 * 110.40749 * 265.07595 * 17 16 14 36 36 H 1.08994 * 109.47341 * 295.17960 * 19 18 17 37 37 H 1.09005 * 109.46879 * 55.17646 * 19 18 17 38 38 H 1.09000 * 112.84366 * 42.73733 * 20 19 18 39 39 H 1.09003 * 113.61356 * 334.56688 * 21 20 19 40 40 H 1.09007 * 113.61726 * 105.46622 * 21 20 19 41 41 H 1.09001 * 113.53321 * 270.81691 * 22 21 20 42 42 H 1.08992 * 113.66809 * 139.92865 * 22 21 20 43 43 H 1.09001 * 113.61203 * 254.53549 * 23 20 19 44 44 H 1.09003 * 113.61232 * 25.34732 * 23 20 19 45 45 H 1.09001 * 110.41536 * 280.70215 * 24 18 17 46 46 H 1.09000 * 110.41055 * 158.26267 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6242 1.9749 -0.8555 5 6 3.5443 1.4435 -0.0905 6 1 4.1341 1.8287 0.7280 7 6 4.1673 0.9526 -1.2183 8 7 5.4487 0.6582 -1.1860 9 14 3.1916 0.7058 -2.7919 10 1 3.2385 1.9484 -3.6035 11 1 3.7797 -0.4151 -3.5684 12 1 1.7808 0.3877 -2.4547 13 7 1.6236 2.1091 1.2410 14 6 1.6213 3.5691 1.0792 15 1 2.4160 3.8752 0.3987 16 6 0.2522 4.0478 0.5539 17 6 -0.2916 4.9884 1.6508 18 7 0.9180 5.4613 2.3719 19 6 0.5736 5.9491 3.7141 20 6 1.8539 6.3139 4.4683 21 6 2.4708 5.1358 5.2404 22 6 2.7702 6.1377 6.3704 23 6 1.5979 6.9752 5.8328 24 6 1.7895 4.2607 2.4492 25 1 -0.3633 0.5901 -0.8414 26 1 -0.3633 -1.0238 -0.0904 27 1 -0.3633 0.4335 0.9316 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 5.8872 0.3132 -1.9795 31 1 2.2094 1.8319 2.0144 32 1 0.3749 4.5904 -0.3834 33 1 -0.4183 3.1995 0.4165 34 1 -0.8201 5.8297 1.2023 35 1 -0.9489 4.4428 2.3278 36 1 -0.0614 6.8309 3.6283 37 1 0.0409 5.1693 4.2584 38 1 2.5706 6.8534 3.8491 39 1 1.7477 4.3686 5.5173 40 1 3.3651 4.7261 4.7705 41 1 3.7386 6.6283 6.2718 42 1 2.5979 5.7356 7.3687 43 1 1.7883 8.0484 5.8404 44 1 0.6350 6.7130 6.2712 45 1 1.4580 3.6012 3.2512 46 1 2.8281 4.5541 2.6019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:29 Heat of formation + Delta-G solvation = -1.796244 kcal Electronic energy + Delta-G solvation = -21305.054940 eV Core-core repulsion = 18421.825126 eV Total energy + Delta-G solvation = -2883.229814 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.65580 -39.15286 -37.43156 -34.41720 -33.52317 -31.52568 -29.50774 -28.44833 -27.23227 -26.39179 -24.31508 -23.64957 -22.10860 -21.27089 -20.85617 -20.22150 -19.06320 -17.23157 -17.12404 -16.78048 -16.18257 -15.67724 -15.61103 -15.02755 -14.83767 -14.67317 -14.38245 -14.13312 -13.61265 -13.39524 -13.32155 -13.20105 -13.06305 -13.01676 -12.71437 -12.58596 -12.32102 -12.12636 -11.97754 -11.89536 -11.55389 -11.50829 -11.39388 -11.35842 -11.10439 -11.02298 -10.95246 -10.60573 -9.40411 -9.07463 -8.34542 -6.33648 1.31913 1.36120 1.45970 2.33134 2.98944 3.02792 3.62539 3.71312 3.77365 3.80397 3.88642 3.98797 4.09252 4.29219 4.40764 4.47787 4.51952 4.56342 4.57255 4.68662 4.73202 4.77961 4.82017 4.86797 4.89919 4.97435 5.01508 5.03631 5.08809 5.10819 5.15989 5.20607 5.25268 5.27970 5.37042 5.43537 5.52526 5.55505 5.62593 5.71985 5.86225 6.14736 6.18479 6.43628 6.67023 6.81380 7.33482 8.82118 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.023491 B = 0.004754 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.641805 B = 5887.973190 C = 6367.766168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.111 4.111 3 C 0.196 3.804 4 H 0.024 0.976 5 C -0.550 4.550 6 H 0.029 0.971 7 C 0.023 3.977 8 N -0.941 5.941 9 Si 0.924 3.076 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.223 1.223 13 N -0.659 5.659 14 C 0.081 3.919 15 H 0.021 0.979 16 C -0.111 4.111 17 C 0.044 3.956 18 N -0.520 5.520 19 C 0.058 3.942 20 C -0.109 4.109 21 C -0.145 4.145 22 C -0.139 4.139 23 C -0.124 4.124 24 C 0.053 3.947 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.264 0.736 31 H 0.329 0.671 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.038 0.962 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.053 0.947 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.243 9.989 10.971 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.150 4.150 3 C 0.086 3.914 4 H 0.042 0.958 5 C -0.589 4.589 6 H 0.047 0.953 7 C -0.176 4.176 8 N -0.580 5.580 9 Si 0.747 3.253 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.146 1.146 13 N -0.287 5.287 14 C -0.030 4.030 15 H 0.039 0.961 16 C -0.150 4.150 17 C -0.084 4.084 18 N -0.244 5.244 19 C -0.070 4.070 20 C -0.127 4.127 21 C -0.183 4.183 22 C -0.176 4.176 23 C -0.162 4.162 24 C -0.076 4.076 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.071 0.929 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.536 10.312 10.478 19.983 hybrid contribution 1.352 -0.791 -0.601 1.678 sum -12.183 9.521 9.877 18.347 Atomic orbital electron populations 1.21607 0.94828 1.00513 1.01765 1.21742 0.96065 0.97351 0.99796 1.19363 0.90653 0.91976 0.89422 0.95843 1.22004 0.92892 1.41327 1.02650 0.95307 1.25783 0.95551 0.93933 1.02341 1.70141 1.12916 1.44717 1.30238 0.86231 0.81922 0.77702 0.79398 1.20600 1.21342 1.14554 1.61013 1.56461 1.04896 1.06375 1.22143 0.96640 0.88283 0.95960 0.96076 1.22327 0.95900 0.98716 0.98015 1.23052 0.92034 0.97830 0.95442 1.65410 1.13364 1.28510 1.17129 1.22308 0.96889 0.99885 0.87917 1.22534 0.96972 0.97857 0.95373 1.23112 1.00502 0.96833 0.97813 1.22822 0.98961 0.97585 0.98280 1.22861 0.99023 0.99639 0.94628 1.23035 0.97694 0.91038 0.95793 0.93958 0.92923 0.91642 0.93627 0.94295 0.92700 0.85476 0.92209 0.90430 0.89065 0.93131 0.89556 0.94374 0.90000 0.90353 0.93106 0.90275 0.90706 0.90710 0.89245 0.92852 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.72 71.98 0.70 -3.63 16 2 C -0.11 -4.64 4.94 30.59 0.15 -4.49 16 3 C 0.20 8.90 1.41 44.17 0.06 8.97 16 4 H 0.02 1.11 6.53 -2.39 -0.02 1.09 16 5 C -0.55 -30.84 8.58 25.60 0.22 -30.62 16 6 H 0.03 1.80 8.00 -2.91 -0.02 1.78 16 7 C 0.02 1.32 5.33 84.66 0.45 1.77 16 8 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 9 Si 0.92 43.71 25.82 68.60 1.77 45.48 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 12 H -0.22 -9.53 5.48 99.48 0.55 -8.99 16 13 N -0.66 -25.71 5.42 -468.75 -2.54 -28.25 16 14 C 0.08 2.95 3.16 45.81 0.14 3.10 16 15 H 0.02 0.94 7.56 -2.38 -0.02 0.92 16 16 C -0.11 -3.39 6.70 31.49 0.21 -3.18 16 17 C 0.04 1.10 6.49 86.45 0.56 1.66 16 18 N -0.52 -13.94 5.45 -881.49 -4.80 -18.75 16 19 C 0.06 1.23 4.84 86.30 0.42 1.65 16 20 C -0.11 -2.24 3.35 -10.27 -0.03 -2.28 16 21 C -0.15 -3.09 5.93 31.18 0.18 -2.90 16 22 C -0.14 -2.39 8.09 31.18 0.25 -2.14 16 23 C -0.12 -1.96 7.65 31.12 0.24 -1.72 16 24 C 0.05 1.64 4.35 86.45 0.38 2.02 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.06 2.08 7.86 -2.39 -0.02 2.06 16 28 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.04 1.71 4.92 -2.39 -0.01 1.70 16 30 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.33 13.27 8.10 -89.69 -0.73 12.55 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 2.37 7.95 -2.39 -0.02 2.35 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.17 7.90 -2.39 -0.02 1.15 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.04 0.80 7.66 -2.38 -0.02 0.78 16 38 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.08 1.65 7.88 -2.39 -0.02 1.63 16 40 H 0.05 1.25 7.69 -2.38 -0.02 1.23 16 41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 1.24 8.10 -2.39 -0.02 1.22 16 45 H 0.05 1.60 7.40 -2.39 -0.02 1.58 16 46 H 0.06 2.09 7.33 -2.39 -0.02 2.08 16 Total: -1.00 -62.25 345.50 -1.30 -63.56 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.03 Total: 28.20 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 3.94 Total: -31.79 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -7.04 Total: -105.45 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.77 Total: 45.48 kcal Total: -62.25 -1.30 -63.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.759 kcal (2) G-P(sol) polarization free energy of solvation -62.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds