Wall clock time and date at job start Mon Mar 30 2020 01:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47398 * 2 1 4 4 H 1.08993 * 109.47302 * 305.61292 * 3 2 1 5 5 C 1.50696 * 109.46947 * 185.60987 * 3 2 1 6 6 H 1.08006 * 120.00077 * 239.99832 * 5 3 2 7 7 C 1.37880 * 119.99993 * 60.00606 * 5 3 2 8 8 N 1.31511 * 119.99917 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99973 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47229 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47281 * 119.99783 * 9 7 5 12 12 H 1.48493 * 109.47305 * 239.99749 * 9 7 5 13 13 N 1.46902 * 109.47108 * 65.61368 * 3 2 1 14 14 C 1.46903 * 111.00013 * 257.58185 * 13 3 2 15 15 H 1.09002 * 110.27093 * 35.15721 * 14 13 3 16 16 C 1.54593 * 110.30283 * 273.06997 * 14 13 3 17 17 C 1.55110 * 102.84366 * 219.18268 * 16 14 13 18 18 N 1.48531 * 103.27994 * 37.30782 * 17 16 14 19 19 C 1.46900 * 110.99882 * 200.32903 * 18 17 16 20 20 C 1.54268 * 110.03392 * 299.13503 * 19 18 17 21 21 C 1.54959 * 104.16080 * 217.13094 * 20 19 18 22 22 C 1.54896 * 102.77534 * 37.89036 * 21 20 19 23 23 C 1.53868 * 110.03475 * 181.91667 * 19 18 17 24 24 C 1.47895 * 105.82221 * 320.84377 * 18 17 16 25 25 H 1.09001 * 109.46831 * 297.98936 * 1 2 3 26 26 H 1.09000 * 109.46808 * 57.98359 * 1 2 3 27 27 H 1.08994 * 109.47143 * 177.98477 * 1 2 3 28 28 H 1.09002 * 109.46919 * 120.00570 * 2 1 3 29 29 H 1.09003 * 109.46813 * 239.99772 * 2 1 3 30 30 H 0.96999 * 120.00131 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99662 * 21.52722 * 13 3 2 32 32 H 1.08994 * 110.73010 * 337.48512 * 16 14 13 33 33 H 1.09000 * 110.72335 * 100.77312 * 16 14 13 34 34 H 1.08993 * 110.59386 * 278.87541 * 17 16 14 35 35 H 1.08999 * 110.82930 * 155.84994 * 17 16 14 36 36 H 1.09009 * 110.01395 * 60.52433 * 19 18 17 37 37 H 1.08993 * 110.48745 * 335.78486 * 20 19 18 38 38 H 1.09002 * 110.48220 * 98.42623 * 20 19 18 39 39 H 1.08995 * 110.72501 * 279.57674 * 21 20 19 40 40 H 1.09006 * 110.76511 * 156.22111 * 21 20 19 41 41 H 1.09003 * 110.48387 * 203.40385 * 22 21 20 42 42 H 1.08998 * 110.48333 * 80.75948 * 22 21 20 43 43 H 1.09006 * 110.03333 * 238.57396 * 23 19 18 44 44 H 1.09000 * 110.03348 * 359.95495 * 23 19 18 45 45 H 1.09001 * 109.92170 * 265.97705 * 24 18 17 46 46 H 1.09006 * 109.92027 * 144.68499 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5971 1.9845 -0.8354 5 6 3.5406 1.4446 -0.1389 6 1 4.1538 1.8865 0.6327 7 6 4.1309 0.8827 -1.2511 8 7 3.3843 0.3444 -2.1905 9 14 5.9908 0.8860 -1.4236 10 1 6.5966 1.5466 -0.2396 11 1 6.4820 -0.5125 -1.5147 12 1 6.3726 1.6258 -2.6532 13 7 1.6642 2.0948 1.2614 14 6 0.5104 2.9839 1.0710 15 1 -0.1732 2.5627 0.3338 16 6 0.9822 4.3870 0.6254 17 6 0.0311 5.3337 1.4034 18 7 -0.1315 4.6528 2.7134 19 6 -1.3422 5.1192 3.4024 20 6 -1.2469 6.6355 3.6701 21 6 -1.9094 6.8176 5.0591 22 6 -1.4370 5.5607 5.8313 23 6 -1.4634 4.4361 4.7757 24 6 -0.2183 3.2081 2.4089 25 1 -0.3633 0.4823 0.9075 26 1 -0.3633 0.5448 -0.8714 27 1 -0.3633 -1.0270 -0.0361 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.7995 -0.0512 -2.9727 31 1 1.4794 1.4117 1.9807 32 1 2.0185 4.5564 0.9176 33 1 0.8582 4.5121 -0.4503 34 1 -0.9278 5.4186 0.8922 35 1 0.4842 6.3164 1.5342 36 1 -2.2228 4.9014 2.7979 37 1 -0.2046 6.9528 3.7002 38 1 -1.7943 7.1923 2.9096 39 1 -2.9956 6.8303 4.9696 40 1 -1.5498 7.7259 5.5427 41 1 -2.1231 5.3342 6.6474 42 1 -0.4253 5.7040 6.2108 43 1 -2.4032 3.8873 4.8382 44 1 -0.6244 3.7578 4.9307 45 1 -1.2627 2.9099 2.3175 46 1 0.2672 2.6326 3.1971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:23 Heat of formation + Delta-G solvation = -9.294891 kcal Electronic energy + Delta-G solvation = -21278.531158 eV Core-core repulsion = 18394.976178 eV Total energy + Delta-G solvation = -2883.554980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.49553 -37.30055 -35.44277 -32.39671 -31.09897 -29.80434 -28.94895 -27.80486 -26.60264 -25.22520 -22.66694 -21.62450 -20.81242 -19.81332 -19.63472 -19.21969 -16.55201 -16.15267 -15.77732 -15.29253 -14.58493 -14.47752 -14.08252 -13.54736 -13.34182 -13.22644 -13.07844 -12.53356 -12.45533 -12.13792 -11.61618 -11.40547 -11.20922 -11.20716 -11.09873 -10.91349 -10.80744 -10.77386 -10.76530 -10.65008 -10.59320 -10.53272 -10.26104 -9.98851 -9.71970 -9.63408 -8.98655 -8.29207 -8.19364 -7.12440 -5.92842 -3.95290 3.34881 3.42817 3.48918 4.10758 4.46682 4.49575 4.58033 4.86192 5.05367 5.18458 5.23628 5.33095 5.37027 5.42464 5.50310 5.54968 5.58251 5.62826 5.72686 5.80213 5.82775 5.93171 5.97785 6.07738 6.11713 6.12022 6.14685 6.17200 6.24375 6.27809 6.33845 6.39576 6.50911 6.79817 6.84341 6.98738 7.14685 7.23012 7.32880 7.47739 7.79258 7.97701 8.37039 8.63690 8.67504 9.13603 9.69710 11.13216 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.030082 B = 0.004148 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.564009 B = 6748.146878 C = 7118.826849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.218 3.782 4 H 0.028 0.972 5 C -0.486 4.486 6 H 0.063 0.937 7 C 0.052 3.948 8 N -0.899 5.899 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.670 5.670 14 C 0.080 3.920 15 H 0.040 0.960 16 C -0.109 4.109 17 C 0.036 3.964 18 N -0.503 5.503 19 C 0.071 3.929 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.118 4.118 24 C 0.039 3.961 25 H 0.032 0.968 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.100 0.900 30 H 0.258 0.742 31 H 0.322 0.678 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.035 0.965 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 9.069 10.810 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.110 3.890 4 H 0.045 0.955 5 C -0.525 4.525 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.301 5.301 14 C -0.031 4.031 15 H 0.058 0.942 16 C -0.147 4.147 17 C -0.092 4.092 18 N -0.228 5.228 19 C -0.038 4.038 20 C -0.154 4.154 21 C -0.162 4.162 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.089 4.089 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.623 9.589 10.919 18.001 hybrid contribution -0.572 -0.995 -0.926 1.475 sum -11.195 8.594 9.993 17.293 Atomic orbital electron populations 1.21892 0.99643 0.99365 0.99572 1.22229 0.91393 1.02074 1.02978 1.19232 0.95459 0.88641 0.85667 0.95451 1.21296 0.91316 1.35488 1.04439 0.91845 1.24964 0.98045 0.95765 0.95955 1.69880 1.34536 1.39915 1.09644 0.86496 0.85913 0.77428 0.77896 1.19733 1.21320 1.21284 1.60914 1.34116 1.24177 1.10893 1.22348 0.91872 0.94920 0.93950 0.94172 1.22563 1.00578 0.93204 0.98400 1.23244 0.98210 0.98577 0.89128 1.64884 1.34790 1.03708 1.19409 1.22492 0.91121 0.95087 0.95139 1.22432 1.01686 0.94751 0.96567 1.22474 0.99869 0.98013 0.95801 1.22299 1.01278 0.94801 0.97371 1.22189 1.01761 0.98101 0.93583 1.23046 0.98082 0.89600 0.98149 0.94876 0.93888 0.94688 0.94611 0.88204 0.93261 0.85990 0.89310 0.91910 0.94694 0.90487 0.94395 0.90312 0.92177 0.91885 0.91657 0.92100 0.91386 0.92330 0.90539 0.94698 0.90099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.77 37.16 0.33 -2.54 16 2 C -0.15 -3.43 5.09 -26.73 -0.14 -3.56 16 3 C 0.22 5.33 2.06 -68.86 -0.14 5.19 16 4 H 0.03 0.75 7.53 -51.93 -0.39 0.36 16 5 C -0.49 -13.40 8.84 -34.44 -0.30 -13.71 16 6 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.61 11.29 55.43 0.63 -24.98 16 9 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.67 -13.99 5.84 -99.53 -0.58 -14.57 16 14 C 0.08 1.44 2.30 -66.36 -0.15 1.29 16 15 H 0.04 0.76 6.46 -51.93 -0.34 0.43 16 16 C -0.11 -1.89 6.74 -24.78 -0.17 -2.05 16 17 C 0.04 0.52 5.82 -1.80 -0.01 0.51 16 18 N -0.50 -7.20 4.99 -221.06 -1.10 -8.30 16 19 C 0.07 0.85 2.34 -66.60 -0.16 0.69 16 20 C -0.12 -1.22 5.62 -25.03 -0.14 -1.36 16 21 C -0.12 -1.10 6.91 -24.70 -0.17 -1.27 16 22 C -0.12 -1.13 6.83 -25.07 -0.17 -1.30 16 23 C -0.12 -1.29 6.12 -25.62 -0.16 -1.45 16 24 C 0.04 0.60 5.48 -2.76 -0.02 0.58 16 25 H 0.03 0.58 6.73 -51.93 -0.35 0.23 16 26 H 0.04 0.85 8.12 -51.93 -0.42 0.43 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.81 8.03 -51.93 -0.42 0.40 16 29 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.32 6.40 7.28 -39.29 -0.29 6.11 16 32 H 0.09 1.73 8.06 -51.93 -0.42 1.31 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.03 0.47 8.01 -51.93 -0.42 0.06 16 35 H 0.08 1.02 7.91 -51.93 -0.41 0.61 16 36 H 0.04 0.47 8.02 -51.92 -0.42 0.05 16 37 H 0.08 0.90 7.92 -51.93 -0.41 0.49 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.93 7.18 -51.93 -0.37 0.56 16 45 H 0.03 0.50 7.70 -51.93 -0.40 0.10 16 46 H 0.08 1.26 7.21 -51.93 -0.37 0.88 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -27.68 344.54 -11.03 -38.71 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.66 Total: 4.95 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -1.49 Total: -17.61 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -1.06 Total: -47.85 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.68 -11.03 -38.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.416 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds