Wall clock time and date at job start Mon Mar 30 2020 01:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47398 * 2 1 4 4 H 1.08993 * 109.47302 * 305.61292 * 3 2 1 5 5 C 1.50696 * 109.46947 * 185.60987 * 3 2 1 6 6 H 1.08006 * 120.00077 * 239.99832 * 5 3 2 7 7 C 1.37880 * 119.99993 * 60.00606 * 5 3 2 8 8 N 1.31511 * 119.99917 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99973 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47229 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47281 * 119.99783 * 9 7 5 12 12 H 1.48493 * 109.47305 * 239.99749 * 9 7 5 13 13 N 1.46902 * 109.47108 * 65.61368 * 3 2 1 14 14 C 1.46903 * 111.00013 * 257.58185 * 13 3 2 15 15 H 1.09002 * 110.27093 * 35.15721 * 14 13 3 16 16 C 1.54593 * 110.30283 * 273.06997 * 14 13 3 17 17 C 1.55110 * 102.84366 * 219.18268 * 16 14 13 18 18 N 1.48531 * 103.27994 * 37.30782 * 17 16 14 19 19 C 1.46900 * 110.99882 * 200.32903 * 18 17 16 20 20 C 1.54268 * 110.03392 * 299.13503 * 19 18 17 21 21 C 1.54959 * 104.16080 * 217.13094 * 20 19 18 22 22 C 1.54896 * 102.77534 * 37.89036 * 21 20 19 23 23 C 1.53868 * 110.03475 * 181.91667 * 19 18 17 24 24 C 1.47895 * 105.82221 * 320.84377 * 18 17 16 25 25 H 1.09001 * 109.46831 * 297.98936 * 1 2 3 26 26 H 1.09000 * 109.46808 * 57.98359 * 1 2 3 27 27 H 1.08994 * 109.47143 * 177.98477 * 1 2 3 28 28 H 1.09002 * 109.46919 * 120.00570 * 2 1 3 29 29 H 1.09003 * 109.46813 * 239.99772 * 2 1 3 30 30 H 0.96999 * 120.00131 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99662 * 21.52722 * 13 3 2 32 32 H 1.08994 * 110.73010 * 337.48512 * 16 14 13 33 33 H 1.09000 * 110.72335 * 100.77312 * 16 14 13 34 34 H 1.08993 * 110.59386 * 278.87541 * 17 16 14 35 35 H 1.08999 * 110.82930 * 155.84994 * 17 16 14 36 36 H 1.09009 * 110.01395 * 60.52433 * 19 18 17 37 37 H 1.08993 * 110.48745 * 335.78486 * 20 19 18 38 38 H 1.09002 * 110.48220 * 98.42623 * 20 19 18 39 39 H 1.08995 * 110.72501 * 279.57674 * 21 20 19 40 40 H 1.09006 * 110.76511 * 156.22111 * 21 20 19 41 41 H 1.09003 * 110.48387 * 203.40385 * 22 21 20 42 42 H 1.08998 * 110.48333 * 80.75948 * 22 21 20 43 43 H 1.09006 * 110.03333 * 238.57396 * 23 19 18 44 44 H 1.09000 * 110.03348 * 359.95495 * 23 19 18 45 45 H 1.09001 * 109.92170 * 265.97705 * 24 18 17 46 46 H 1.09006 * 109.92027 * 144.68499 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5971 1.9845 -0.8354 5 6 3.5406 1.4446 -0.1389 6 1 4.1538 1.8865 0.6327 7 6 4.1309 0.8827 -1.2511 8 7 3.3843 0.3444 -2.1905 9 14 5.9908 0.8860 -1.4236 10 1 6.5966 1.5466 -0.2396 11 1 6.4820 -0.5125 -1.5147 12 1 6.3726 1.6258 -2.6532 13 7 1.6642 2.0948 1.2614 14 6 0.5104 2.9839 1.0710 15 1 -0.1732 2.5627 0.3338 16 6 0.9822 4.3870 0.6254 17 6 0.0311 5.3337 1.4034 18 7 -0.1315 4.6528 2.7134 19 6 -1.3422 5.1192 3.4024 20 6 -1.2469 6.6355 3.6701 21 6 -1.9094 6.8176 5.0591 22 6 -1.4370 5.5607 5.8313 23 6 -1.4634 4.4361 4.7757 24 6 -0.2183 3.2081 2.4089 25 1 -0.3633 0.4823 0.9075 26 1 -0.3633 0.5448 -0.8714 27 1 -0.3633 -1.0270 -0.0361 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.7995 -0.0512 -2.9727 31 1 1.4794 1.4117 1.9807 32 1 2.0185 4.5564 0.9176 33 1 0.8582 4.5121 -0.4503 34 1 -0.9278 5.4186 0.8922 35 1 0.4842 6.3164 1.5342 36 1 -2.2228 4.9014 2.7979 37 1 -0.2046 6.9528 3.7002 38 1 -1.7943 7.1923 2.9096 39 1 -2.9956 6.8303 4.9696 40 1 -1.5498 7.7259 5.5427 41 1 -2.1231 5.3342 6.6474 42 1 -0.4253 5.7040 6.2108 43 1 -2.4032 3.8873 4.8382 44 1 -0.6244 3.7578 4.9307 45 1 -1.2627 2.9099 2.3175 46 1 0.2672 2.6326 3.1971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:23 Heat of formation + Delta-G solvation = -25.860989 kcal Electronic energy + Delta-G solvation = -21279.249518 eV Core-core repulsion = 18394.976178 eV Total energy + Delta-G solvation = -2884.273340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63716 -38.59344 -36.92138 -34.28881 -32.67416 -31.08168 -30.09396 -29.11695 -27.93150 -26.73572 -24.50950 -22.81557 -21.78516 -21.51071 -20.90332 -20.31495 -18.35487 -17.40620 -17.09500 -16.54928 -16.41866 -15.73108 -15.26840 -15.11547 -14.84760 -14.53946 -14.14328 -13.92142 -13.85486 -13.45615 -13.27371 -13.13107 -12.84311 -12.58890 -12.38180 -12.19652 -12.05317 -11.94384 -11.93751 -11.82020 -11.78702 -11.69173 -11.65162 -11.61361 -11.38528 -11.32107 -10.95372 -10.41085 -9.31623 -8.86081 -8.04924 -6.15296 1.41187 1.43524 1.55734 2.46065 3.02169 3.21082 3.57462 3.64099 3.75327 3.80256 4.02784 4.14411 4.32911 4.36172 4.42461 4.50156 4.51133 4.59867 4.62890 4.64080 4.67343 4.75699 4.77590 4.86556 4.94637 4.96725 5.03770 5.05827 5.10024 5.11031 5.18545 5.23259 5.27512 5.31918 5.37682 5.42456 5.53565 5.59080 5.76595 5.89670 5.98983 6.27517 6.38641 6.73598 6.93120 7.00135 7.54212 8.98833 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.030082 B = 0.004148 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.564009 B = 6748.146878 C = 7118.826849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 C 0.228 3.772 4 H -0.005 1.005 5 C -0.507 4.507 6 H 0.049 0.951 7 C 0.009 3.991 8 N -0.922 5.922 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.674 5.674 14 C 0.079 3.921 15 H 0.032 0.968 16 C -0.111 4.111 17 C 0.049 3.951 18 N -0.513 5.513 19 C 0.067 3.933 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.118 4.118 24 C 0.051 3.949 25 H 0.051 0.949 26 H 0.034 0.966 27 H 0.054 0.946 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.259 0.741 31 H 0.329 0.671 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.742 9.805 12.173 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.181 4.181 3 C 0.119 3.881 4 H 0.013 0.987 5 C -0.546 4.546 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.563 5.563 9 Si 0.781 3.219 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.305 5.305 14 C -0.032 4.032 15 H 0.050 0.950 16 C -0.150 4.150 17 C -0.079 4.079 18 N -0.238 5.238 19 C -0.041 4.041 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.077 4.077 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.147 0.853 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.834 10.333 12.297 19.950 hybrid contribution -0.203 -1.203 -1.347 1.817 sum -12.038 9.130 10.950 18.659 Atomic orbital electron populations 1.21736 0.96541 1.00783 1.00135 1.22042 0.94160 1.00586 1.01300 1.18932 0.93802 0.89277 0.86085 0.98746 1.21574 0.93048 1.35631 1.04351 0.93241 1.25662 1.02125 0.95438 0.95685 1.70005 1.36054 1.40266 1.09928 0.85557 0.81028 0.77563 0.77755 1.19591 1.20656 1.20884 1.60784 1.36093 1.24195 1.09422 1.22385 0.90944 0.94286 0.95598 0.94993 1.22496 0.99969 0.94090 0.98397 1.23141 0.97881 0.98132 0.88768 1.64900 1.36577 1.03003 1.19323 1.22621 0.89924 0.96256 0.95333 1.22425 1.01353 0.93571 0.97965 1.22467 1.00417 0.98127 0.94566 1.22297 1.01361 0.94508 0.97431 1.22194 1.01609 0.98383 0.93448 1.22878 0.98244 0.90516 0.96084 0.92956 0.94715 0.92702 0.94547 0.91475 0.93208 0.85289 0.91887 0.92790 0.93429 0.89319 0.94236 0.91471 0.91300 0.90753 0.90627 0.90606 0.92118 0.91307 0.92093 0.93299 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.77 71.98 0.63 -4.48 16 2 C -0.14 -6.65 5.09 30.60 0.16 -6.49 16 3 C 0.23 11.45 2.06 44.17 0.09 11.54 16 4 H -0.01 -0.30 7.53 -2.39 -0.02 -0.32 16 5 C -0.51 -28.67 8.84 25.60 0.23 -28.44 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.01 0.48 5.29 84.66 0.45 0.93 16 8 N -0.92 -53.55 11.29 21.45 0.24 -53.31 16 9 Si 0.95 44.93 29.54 68.60 2.03 46.96 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 N -0.67 -28.51 5.84 -468.82 -2.74 -31.25 16 14 C 0.08 2.83 2.30 45.79 0.11 2.93 16 15 H 0.03 1.21 6.46 -2.39 -0.02 1.20 16 16 C -0.11 -3.90 6.74 31.86 0.21 -3.68 16 17 C 0.05 1.33 5.82 86.71 0.51 1.83 16 18 N -0.51 -13.95 4.99 -853.30 -4.26 -18.21 16 19 C 0.07 1.46 2.34 45.64 0.11 1.57 16 20 C -0.12 -2.13 5.62 31.69 0.18 -1.95 16 21 C -0.12 -1.75 6.91 31.91 0.22 -1.53 16 22 C -0.12 -1.93 6.83 31.67 0.22 -1.71 16 23 C -0.12 -2.33 6.12 31.32 0.19 -2.13 16 24 C 0.05 1.49 5.48 86.45 0.47 1.96 16 25 H 0.05 1.77 6.73 -2.39 -0.02 1.75 16 26 H 0.03 1.35 8.12 -2.39 -0.02 1.33 16 27 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.04 1.66 8.03 -2.39 -0.02 1.64 16 29 H 0.07 3.63 5.94 -2.39 -0.01 3.61 16 30 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.33 13.00 7.28 -89.69 -0.65 12.35 16 32 H 0.06 2.53 8.06 -2.39 -0.02 2.51 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 34 H 0.05 1.19 8.01 -2.39 -0.02 1.17 16 35 H 0.09 2.22 7.91 -2.39 -0.02 2.21 16 36 H 0.04 0.86 8.02 -2.38 -0.02 0.85 16 37 H 0.07 1.41 7.92 -2.39 -0.02 1.39 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.06 1.39 7.18 -2.39 -0.02 1.37 16 45 H 0.05 1.30 7.70 -2.39 -0.02 1.28 16 46 H 0.08 2.34 7.21 -2.38 -0.02 2.32 16 Total: -1.00 -60.09 344.54 -0.70 -60.79 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.27 Total: 24.68 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 3.76 Total: -29.66 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -6.76 Total: -102.77 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -60.09 -0.70 -60.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.929 kcal (2) G-P(sol) polarization free energy of solvation -60.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds