Wall clock time and date at job start Mon Mar 30 2020 01:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47319 * 2 1 4 4 H 1.09005 * 109.47079 * 58.92064 * 3 2 1 5 5 C 1.50701 * 109.47185 * 178.91638 * 3 2 1 6 6 H 1.08001 * 119.99573 * 114.38513 * 5 3 2 7 7 C 1.37872 * 120.00513 * 294.38783 * 5 3 2 8 8 N 1.31516 * 119.99706 * 0.37264 * 7 5 3 9 9 Si 1.86795 * 120.00316 * 180.37697 * 7 5 3 10 10 H 1.48499 * 109.47145 * 4.99659 * 9 7 5 11 11 H 1.48492 * 109.47427 * 125.00284 * 9 7 5 12 12 H 1.48510 * 109.46871 * 245.00182 * 9 7 5 13 13 N 1.46905 * 109.47267 * 298.91900 * 3 2 1 14 14 C 1.47445 * 111.00067 * 175.09222 * 13 3 2 15 15 C 1.54312 * 107.23294 * 123.25523 * 14 13 3 16 16 C 1.55140 * 103.01828 * 22.28668 * 15 14 13 17 17 C 1.47845 * 110.99824 * 295.93633 * 13 3 2 18 18 H 1.08997 * 110.37354 * 332.46188 * 17 13 3 19 19 C 1.52993 * 110.37440 * 94.80765 * 17 13 3 20 20 N 1.46900 * 109.47348 * 183.27056 * 19 17 13 21 21 C 1.48533 * 110.99836 * 58.10978 * 20 19 17 22 22 C 1.54937 * 103.22208 * 159.72457 * 21 20 19 23 23 C 1.54595 * 102.92573 * 322.58350 * 22 21 20 24 24 C 1.47900 * 111.00229 * 175.51019 * 20 19 17 25 25 H 1.08997 * 109.47312 * 174.99992 * 1 2 3 26 26 H 1.09010 * 109.46841 * 294.99576 * 1 2 3 27 27 H 1.08998 * 109.47114 * 54.99368 * 1 2 3 28 28 H 1.09003 * 109.47088 * 120.00564 * 2 1 3 29 29 H 1.09005 * 109.46960 * 240.00029 * 2 1 3 30 30 H 0.97001 * 120.00267 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.88700 * 242.66626 * 14 13 3 32 32 H 1.09001 * 109.88891 * 3.85065 * 14 13 3 33 33 H 1.08998 * 110.70583 * 140.66415 * 15 14 13 34 34 H 1.08999 * 110.70991 * 263.72548 * 15 14 13 35 35 H 1.08999 * 110.99390 * 82.43285 * 16 15 14 36 36 H 1.09001 * 110.98914 * 206.21669 * 16 15 14 37 37 H 1.09006 * 109.47071 * 303.27043 * 19 17 13 38 38 H 1.09006 * 109.47505 * 63.26518 * 19 17 13 39 39 H 1.09001 * 110.66574 * 278.15618 * 21 20 19 40 40 H 1.08998 * 110.66717 * 41.29007 * 21 20 19 41 41 H 1.09005 * 110.72303 * 204.22537 * 22 21 20 42 42 H 1.09000 * 110.87807 * 81.01399 * 22 21 20 43 43 H 1.09001 * 110.31030 * 263.04450 * 23 22 21 44 44 H 1.08996 * 110.39686 * 140.91602 * 23 22 21 45 45 H 1.09005 * 109.91812 * 333.50627 * 24 20 19 46 46 H 1.08996 * 109.91911 * 94.59974 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6610 1.9618 0.8802 5 6 3.5468 1.4425 0.0269 6 1 4.1019 1.8233 -0.8177 7 6 4.2168 0.9563 1.1295 8 7 3.5409 0.4858 2.1549 9 14 6.0843 0.9661 1.1671 10 1 6.6002 1.6520 -0.0448 11 1 6.5513 1.6852 2.3795 12 1 6.5861 -0.4313 1.1963 13 7 1.5719 2.1274 -1.2123 14 6 1.9458 3.5535 -1.1913 15 6 2.7696 3.8290 -2.4666 16 6 2.3352 2.6828 -3.4177 17 6 2.1459 1.5081 -2.4259 18 1 3.1061 1.0454 -2.1979 19 6 1.1786 0.4734 -3.0042 20 7 1.7997 -0.1845 -4.1615 21 6 3.0795 -0.8350 -3.7805 22 6 3.3003 -1.8719 -4.9104 23 6 1.8685 -2.3784 -5.1995 24 6 0.9367 -1.2668 -4.6824 25 1 -0.3634 -1.0237 -0.0896 26 1 -0.3633 0.4343 0.9315 27 1 -0.3633 0.5895 -0.8417 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 4.0121 0.1434 2.9305 31 1 1.0483 4.1721 -1.1886 32 1 2.5478 3.7660 -0.3078 33 1 2.5115 4.7997 -2.8900 34 1 3.8375 3.7740 -2.2551 35 1 1.3982 2.9254 -3.9190 36 1 3.1175 2.4598 -4.1432 37 1 0.9467 -0.2723 -2.2436 38 1 0.2603 0.9698 -3.3181 39 1 3.8906 -0.1071 -3.7625 40 1 2.9858 -1.3322 -2.8150 41 1 3.9360 -2.6878 -4.5664 42 1 3.7276 -1.3982 -5.7942 43 1 1.6811 -3.3090 -4.6637 44 1 1.7260 -2.5238 -6.2703 45 1 0.3041 -1.6543 -3.8836 46 1 0.3174 -0.8890 -5.4959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:30 Heat of formation + Delta-G solvation = 2.226430 kcal Electronic energy + Delta-G solvation = -22504.957048 eV Core-core repulsion = 19621.901670 eV Total energy + Delta-G solvation = -2883.055378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.27432 -37.77282 -34.05364 -32.38717 -31.65386 -29.41231 -28.81328 -28.02073 -26.27908 -24.08086 -22.84450 -21.35022 -20.64288 -20.20406 -19.75289 -18.60503 -16.39354 -15.77093 -15.60462 -15.31746 -14.41498 -14.27700 -13.76098 -13.62095 -13.12603 -12.89959 -12.50641 -12.38269 -12.21792 -11.94152 -11.78127 -11.38464 -11.22963 -11.10161 -10.99579 -10.93514 -10.84381 -10.56891 -10.51733 -10.39407 -10.35301 -10.10995 -9.89222 -9.81430 -9.62714 -9.42768 -8.99964 -8.40190 -7.92900 -7.10640 -6.00803 -4.11855 3.23781 3.33017 3.35898 4.30166 4.38575 4.83618 4.90882 5.07874 5.25061 5.30906 5.46544 5.47475 5.54038 5.69029 5.79746 5.89971 5.91520 5.96572 6.00637 6.07080 6.22704 6.24483 6.28654 6.30820 6.35069 6.41531 6.43412 6.45251 6.59379 6.62502 6.65759 6.79440 6.91322 7.03348 7.07482 7.16025 7.27589 7.32201 7.48185 7.62921 7.74268 7.96387 8.18739 8.31557 8.47172 9.00203 9.55152 11.00349 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.015549 B = 0.007562 C = 0.006922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.341336 B = 3701.799517 C = 4044.270474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C 0.209 3.791 4 H 0.040 0.960 5 C -0.539 4.539 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.526 5.526 14 C 0.054 3.946 15 C -0.140 4.140 16 C -0.111 4.111 17 C 0.078 3.922 18 H 0.076 0.924 19 C 0.054 3.946 20 N -0.517 5.517 21 C 0.035 3.965 22 C -0.124 4.124 23 C -0.129 4.129 24 C 0.037 3.963 25 H 0.023 0.977 26 H 0.039 0.961 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.041 0.959 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.195 -1.898 -11.329 11.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C 0.102 3.898 4 H 0.058 0.942 5 C -0.578 4.578 6 H 0.076 0.924 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.710 3.290 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.251 5.251 14 C -0.074 4.074 15 C -0.178 4.178 16 C -0.149 4.149 17 C -0.031 4.031 18 H 0.093 0.907 19 C -0.074 4.074 20 N -0.241 5.241 21 C -0.093 4.093 22 C -0.162 4.162 23 C -0.168 4.168 24 C -0.092 4.092 25 H 0.042 0.958 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.657 -1.606 -11.508 12.182 hybrid contribution 1.823 -0.597 0.915 2.125 sum -1.834 -2.203 -10.594 10.975 Atomic orbital electron populations 1.21802 0.98858 0.98410 1.00977 1.21625 0.92212 0.99480 1.01233 1.19421 0.92425 0.90723 0.87234 0.94169 1.21776 0.92524 1.41421 1.02066 0.92395 1.24918 0.97804 0.95106 0.95589 1.69923 1.34976 1.41292 1.06162 0.86693 0.86569 0.77792 0.77902 1.19874 1.21087 1.21021 1.63641 1.56901 1.01276 1.03246 1.22519 0.96980 0.90697 0.97213 1.22760 1.00196 0.98028 0.96852 1.22573 1.00423 0.94947 0.96947 1.22420 0.96969 0.93969 0.89700 0.90668 1.22533 0.97230 0.97106 0.90489 1.64731 1.03440 1.24933 1.31033 1.23209 0.93355 0.95976 0.96718 1.22480 0.96324 0.98343 0.99072 1.22372 0.95398 0.97993 1.00996 1.22807 0.95736 0.91349 0.99294 0.95828 0.94179 0.92656 0.90284 0.94572 0.93012 0.92899 0.92012 0.92534 0.92010 0.91986 0.92107 0.92712 0.91499 0.90102 0.93226 0.91510 0.91159 0.91883 0.91523 0.94059 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.94 37.16 0.33 -2.53 16 2 C -0.11 -2.47 4.70 -26.73 -0.13 -2.59 16 3 C 0.21 5.03 1.51 -68.87 -0.10 4.93 16 4 H 0.04 1.10 8.13 -51.93 -0.42 0.68 16 5 C -0.54 -13.99 6.43 -34.44 -0.22 -14.21 16 6 H 0.06 1.52 6.51 -52.49 -0.34 1.18 16 7 C 0.07 1.83 5.33 -17.82 -0.09 1.74 16 8 N -0.89 -24.68 11.72 55.43 0.65 -24.03 16 9 Si 0.88 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.53 -10.98 4.04 -216.86 -0.88 -11.85 16 14 C 0.05 1.06 6.38 -2.84 -0.02 1.05 16 15 C -0.14 -2.42 6.94 -24.91 -0.17 -2.59 16 16 C -0.11 -1.89 6.34 -24.59 -0.16 -2.05 16 17 C 0.08 1.49 1.33 -66.19 -0.09 1.41 16 18 H 0.08 1.65 4.42 -51.93 -0.23 1.42 16 19 C 0.05 0.95 3.53 -3.83 -0.01 0.93 16 20 N -0.52 -8.04 5.19 -230.45 -1.20 -9.23 16 21 C 0.04 0.55 5.35 -1.90 -0.01 0.54 16 22 C -0.12 -1.55 7.06 -24.87 -0.18 -1.72 16 23 C -0.13 -1.50 6.93 -25.37 -0.18 -1.67 16 24 C 0.04 0.49 6.70 -2.75 -0.02 0.47 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.05 1.07 6.44 -51.93 -0.33 0.74 16 28 H 0.08 2.06 6.49 -51.93 -0.34 1.72 16 29 H 0.04 0.82 5.37 -51.93 -0.28 0.54 16 30 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.34 7.05 -51.93 -0.37 0.97 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.02 8.00 -51.93 -0.42 0.61 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.03 4.04 -51.93 -0.21 0.82 16 38 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 39 H 0.08 1.32 7.53 -51.93 -0.39 0.93 16 40 H 0.05 0.86 7.86 -51.93 -0.41 0.45 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.04 0.57 7.66 -51.93 -0.40 0.17 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -26.51 334.74 -10.78 -37.29 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -8.34 Total: 3.22 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.04 Total: -16.32 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -1.42 Total: -45.11 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.51 -10.78 -37.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.513 kcal (2) G-P(sol) polarization free energy of solvation -26.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds