Wall clock time and date at job start Mon Mar 30 2020 01:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47159 * 2 1 4 4 H 1.09006 * 109.47141 * 179.04857 * 3 2 1 5 5 C 1.50701 * 109.47289 * 59.05121 * 3 2 1 6 6 H 1.08003 * 119.99204 * 240.00238 * 5 3 2 7 7 C 1.37874 * 120.00204 * 59.99676 * 5 3 2 8 8 N 1.31515 * 120.00001 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99792 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47694 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47174 * 120.00123 * 9 7 5 12 12 H 1.48508 * 109.47101 * 239.99963 * 9 7 5 13 13 N 1.46895 * 109.47220 * 299.04769 * 3 2 1 14 14 C 1.47914 * 111.00014 * 300.44850 * 13 3 2 15 15 C 1.55024 * 104.87313 * 213.77696 * 14 13 3 16 16 C 1.54449 * 101.59989 * 36.38779 * 15 14 13 17 17 C 1.47599 * 111.00318 * 179.64257 * 13 3 2 18 18 C 1.52323 * 110.27088 * 83.66778 * 16 15 14 19 19 C 1.53176 * 109.35305 * 178.29322 * 18 16 15 20 20 N 1.46857 * 109.43368 * 302.03665 * 19 18 16 21 21 C 1.46898 * 111.00285 * 186.48258 * 20 19 18 22 22 C 1.46865 * 111.32822 * 62.29481 * 20 19 18 23 23 C 1.52317 * 110.27385 * 206.49267 * 16 15 14 24 24 H 1.08991 * 109.47453 * 304.02938 * 1 2 3 25 25 H 1.09006 * 109.46483 * 64.02481 * 1 2 3 26 26 H 1.09001 * 109.47148 * 184.02564 * 1 2 3 27 27 H 1.09000 * 109.47420 * 239.99708 * 2 1 3 28 28 H 1.09006 * 109.46407 * 119.99680 * 2 1 3 29 29 H 0.97001 * 119.99897 * 179.97438 * 8 7 5 30 30 H 1.08995 * 110.35646 * 332.63136 * 14 13 3 31 31 H 1.09005 * 110.35970 * 94.92654 * 14 13 3 32 32 H 1.08998 * 111.00164 * 278.30947 * 15 14 13 33 33 H 1.09005 * 111.03281 * 154.48238 * 15 14 13 34 34 H 1.09004 * 109.91669 * 243.07075 * 17 13 3 35 35 H 1.08997 * 109.91821 * 4.15981 * 17 13 3 36 36 H 1.08999 * 109.48876 * 298.25960 * 18 16 15 37 37 H 1.09007 * 109.48910 * 58.32621 * 18 16 15 38 38 H 1.09004 * 109.47563 * 182.05290 * 19 18 16 39 39 H 1.08995 * 109.48773 * 62.03409 * 19 18 16 40 40 H 1.08998 * 109.47016 * 295.62546 * 21 20 19 41 41 H 1.09003 * 109.47197 * 55.62870 * 21 20 19 42 42 H 1.09001 * 109.47443 * 175.62632 * 21 20 19 43 43 H 1.08995 * 109.48142 * 177.71705 * 22 20 19 44 44 H 1.09000 * 109.47816 * 57.68358 * 22 20 19 45 45 H 1.09000 * 109.49302 * 301.66894 * 23 16 15 46 46 H 1.09012 * 109.48765 * 61.71581 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4425 0.0171 5 6 1.5186 2.1597 1.2185 6 1 0.8994 3.0372 1.1047 7 6 1.8320 1.6956 2.4784 8 7 2.5864 0.6273 2.6168 9 14 1.1850 2.5843 3.9887 10 1 0.3657 3.7481 3.5653 11 1 0.3476 1.6550 4.7890 12 1 2.3270 3.0558 4.8127 13 7 1.5693 2.1283 -1.2107 14 6 2.0539 1.4446 -2.4296 15 6 2.2833 2.5810 -3.4587 16 6 2.8102 3.7170 -2.5546 17 6 2.0360 3.5282 -1.2410 18 6 4.3075 3.5571 -2.3247 19 6 4.8153 4.7165 -1.4621 20 7 4.5132 5.9900 -2.1282 21 6 5.1193 7.1177 -1.4079 22 6 3.0653 6.1815 -2.2829 23 6 2.4970 5.0728 -3.1741 24 1 -0.3634 0.5750 0.8516 25 1 -0.3632 0.4501 -0.9239 26 1 -0.3633 -1.0251 0.0721 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.8072 0.3010 3.5033 30 1 2.9891 0.9232 -2.2254 31 1 1.3019 0.7462 -2.7971 32 1 1.3481 2.8668 -3.9401 33 1 3.0295 2.2932 -4.1994 34 1 1.1820 4.2050 -1.2128 35 1 2.6898 3.7202 -0.3903 36 1 4.4982 2.6131 -1.8142 37 1 4.8254 3.5633 -3.2839 38 1 5.8929 4.6239 -1.3266 39 1 4.3232 4.6891 -0.4899 40 1 4.6700 7.2004 -0.4183 41 1 6.1917 6.9503 -1.3073 42 1 4.9461 8.0392 -1.9637 43 1 2.8740 7.1512 -2.7425 44 1 2.5869 6.1422 -1.3043 45 1 2.9497 5.1338 -4.1638 46 1 1.4169 5.1926 -3.2601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255175053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:12 Heat of formation + Delta-G solvation = -2.094018 kcal Electronic energy + Delta-G solvation = -22374.050018 eV Core-core repulsion = 19490.807292 eV Total energy + Delta-G solvation = -2883.242726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02594 -37.22807 -34.67326 -32.22230 -30.82580 -30.64612 -29.33361 -26.90587 -26.01909 -24.43473 -23.10540 -22.85438 -21.55049 -20.70329 -18.78202 -17.98882 -15.98885 -15.75346 -15.06222 -15.05411 -14.95924 -14.46941 -13.98337 -13.53323 -13.32080 -12.90913 -12.86538 -12.32709 -12.27389 -12.05181 -11.90641 -11.74051 -11.59675 -11.40135 -11.11652 -10.94145 -10.89150 -10.87957 -10.58599 -10.41313 -10.03602 -9.94396 -9.82877 -9.81305 -9.57451 -9.26521 -8.78332 -8.40854 -8.16942 -7.05208 -5.99265 -4.01857 3.28261 3.36895 3.40952 4.07295 4.41781 4.89299 4.95664 4.96133 5.22588 5.25963 5.32320 5.47161 5.47335 5.53058 5.67440 5.72732 5.79487 5.83648 5.87033 5.90836 6.03989 6.11817 6.14162 6.25565 6.28856 6.38087 6.45198 6.51139 6.55979 6.62969 6.66515 6.81394 6.85752 6.86684 7.17567 7.19419 7.22038 7.32374 7.47936 7.69132 7.78465 7.87451 8.21425 8.40013 8.63649 9.04528 9.61899 11.07259 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.007261 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.698453 B = 3855.480661 C = 4847.092427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.214 3.786 4 H -0.004 1.004 5 C -0.493 4.493 6 H 0.059 0.941 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.521 5.521 14 C 0.046 3.954 15 C -0.118 4.118 16 C -0.082 4.082 17 C 0.067 3.933 18 C -0.097 4.097 19 C 0.054 3.946 20 N -0.544 5.544 21 C 0.025 3.975 22 C 0.054 3.946 23 C -0.095 4.095 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.014 0.986 27 H 0.012 0.988 28 H 0.089 0.911 29 H 0.259 0.741 30 H 0.035 0.965 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.025 0.975 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.038 0.962 45 H 0.064 0.936 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 7.573 -10.099 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.013 0.987 5 C -0.532 4.532 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.213 1.213 13 N -0.246 5.246 14 C -0.082 4.082 15 C -0.156 4.156 16 C -0.083 4.083 17 C -0.061 4.061 18 C -0.135 4.135 19 C -0.074 4.074 20 N -0.268 5.268 21 C -0.123 4.123 22 C -0.073 4.073 23 C -0.133 4.133 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.033 0.967 27 H 0.030 0.970 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.083 0.917 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.430 7.420 -10.377 12.986 hybrid contribution 0.253 0.404 1.798 1.860 sum 2.683 7.825 -8.579 11.917 Atomic orbital electron populations 1.21459 0.97327 0.97450 1.01455 1.21532 0.95237 0.98260 0.99827 1.19434 0.92660 0.91039 0.86122 0.98652 1.21092 1.30673 1.11703 0.89699 0.92231 1.24887 0.95332 0.95113 0.98788 1.69891 1.37504 1.23113 1.22658 0.86580 0.78656 0.79821 0.83215 1.19819 1.21029 1.21269 1.63712 1.57624 1.00877 1.02343 1.22946 0.98008 0.96024 0.91262 1.22690 1.00299 0.95504 0.97150 1.21351 0.95287 0.94740 0.96955 1.22655 0.96887 0.91792 0.94812 1.21420 0.94709 0.97504 0.99829 1.22155 1.00218 0.88874 0.96157 1.61941 1.11931 1.02319 1.50647 1.22327 0.99631 0.93961 0.96420 1.22127 0.87310 0.98724 0.99176 1.21429 0.99982 0.93276 0.98647 0.92244 0.94156 0.96708 0.96958 0.89274 0.93144 0.94669 0.91704 0.91352 0.91939 0.92501 0.91947 0.91414 0.91791 0.91239 0.93826 0.95679 0.91673 0.91742 0.91360 0.94362 0.91705 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.52 37.16 0.35 -2.33 16 2 C -0.11 -2.65 5.26 -26.73 -0.14 -2.79 16 3 C 0.21 5.27 1.35 -68.87 -0.09 5.17 16 4 H 0.00 -0.11 8.10 -51.93 -0.42 -0.53 16 5 C -0.49 -13.18 6.31 -34.44 -0.22 -13.39 16 6 H 0.06 1.63 7.42 -52.48 -0.39 1.24 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -25.13 11.33 55.43 0.63 -24.50 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.52 -11.00 4.38 -224.85 -0.98 -11.99 16 14 C 0.05 0.83 5.09 -2.20 -0.01 0.82 16 15 C -0.12 -1.78 5.98 -24.90 -0.15 -1.93 16 16 C -0.08 -1.27 0.53 -154.11 -0.08 -1.35 16 17 C 0.07 1.28 4.26 -3.11 -0.01 1.27 16 18 C -0.10 -1.49 4.71 -26.99 -0.13 -1.61 16 19 C 0.05 0.80 5.30 -3.76 -0.02 0.78 16 20 N -0.54 -7.41 4.89 -242.76 -1.19 -8.60 16 21 C 0.03 0.29 9.59 60.06 0.58 0.87 16 22 C 0.05 0.73 5.31 -3.75 -0.02 0.71 16 23 C -0.10 -1.28 4.73 -26.99 -0.13 -1.40 16 24 H 0.06 1.45 7.05 -51.93 -0.37 1.08 16 25 H 0.04 0.86 7.76 -51.93 -0.40 0.46 16 26 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.01 0.27 7.02 -51.93 -0.36 -0.10 16 28 H 0.09 2.39 6.10 -51.93 -0.32 2.08 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.04 0.67 7.29 -51.93 -0.38 0.29 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.07 0.98 8.02 -51.93 -0.42 0.56 16 33 H 0.06 0.84 8.01 -51.93 -0.42 0.43 16 34 H 0.06 1.10 7.72 -51.93 -0.40 0.70 16 35 H 0.06 1.35 5.18 -51.93 -0.27 1.08 16 36 H 0.07 1.16 7.62 -51.93 -0.40 0.77 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 39 H 0.04 0.75 6.60 -51.93 -0.34 0.41 16 40 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.80 8.12 -51.93 -0.42 0.37 16 44 H 0.04 0.56 7.57 -51.93 -0.39 0.17 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.87 8.03 -51.92 -0.42 0.46 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -27.55 335.62 -10.29 -37.84 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.62 Total: -0.39 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -0.16 Total: -13.67 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: -1.54 Total: -45.09 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.55 -10.29 -37.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.745 kcal (2) G-P(sol) polarization free energy of solvation -27.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds