Wall clock time and date at job start Mon Mar 30 2020 01:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47159 * 2 1 4 4 H 1.09006 * 109.47141 * 179.04857 * 3 2 1 5 5 C 1.50701 * 109.47289 * 59.05121 * 3 2 1 6 6 H 1.08003 * 119.99204 * 240.00238 * 5 3 2 7 7 C 1.37874 * 120.00204 * 59.99676 * 5 3 2 8 8 N 1.31515 * 120.00001 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99792 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47694 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47174 * 120.00123 * 9 7 5 12 12 H 1.48508 * 109.47101 * 239.99963 * 9 7 5 13 13 N 1.46895 * 109.47220 * 299.04769 * 3 2 1 14 14 C 1.47914 * 111.00014 * 300.44850 * 13 3 2 15 15 C 1.55024 * 104.87313 * 213.77696 * 14 13 3 16 16 C 1.54449 * 101.59989 * 36.38779 * 15 14 13 17 17 C 1.47599 * 111.00318 * 179.64257 * 13 3 2 18 18 C 1.52323 * 110.27088 * 83.66778 * 16 15 14 19 19 C 1.53176 * 109.35305 * 178.29322 * 18 16 15 20 20 N 1.46857 * 109.43368 * 302.03665 * 19 18 16 21 21 C 1.46898 * 111.00285 * 186.48258 * 20 19 18 22 22 C 1.46865 * 111.32822 * 62.29481 * 20 19 18 23 23 C 1.52317 * 110.27385 * 206.49267 * 16 15 14 24 24 H 1.08991 * 109.47453 * 304.02938 * 1 2 3 25 25 H 1.09006 * 109.46483 * 64.02481 * 1 2 3 26 26 H 1.09001 * 109.47148 * 184.02564 * 1 2 3 27 27 H 1.09000 * 109.47420 * 239.99708 * 2 1 3 28 28 H 1.09006 * 109.46407 * 119.99680 * 2 1 3 29 29 H 0.97001 * 119.99897 * 179.97438 * 8 7 5 30 30 H 1.08995 * 110.35646 * 332.63136 * 14 13 3 31 31 H 1.09005 * 110.35970 * 94.92654 * 14 13 3 32 32 H 1.08998 * 111.00164 * 278.30947 * 15 14 13 33 33 H 1.09005 * 111.03281 * 154.48238 * 15 14 13 34 34 H 1.09004 * 109.91669 * 243.07075 * 17 13 3 35 35 H 1.08997 * 109.91821 * 4.15981 * 17 13 3 36 36 H 1.08999 * 109.48876 * 298.25960 * 18 16 15 37 37 H 1.09007 * 109.48910 * 58.32621 * 18 16 15 38 38 H 1.09004 * 109.47563 * 182.05290 * 19 18 16 39 39 H 1.08995 * 109.48773 * 62.03409 * 19 18 16 40 40 H 1.08998 * 109.47016 * 295.62546 * 21 20 19 41 41 H 1.09003 * 109.47197 * 55.62870 * 21 20 19 42 42 H 1.09001 * 109.47443 * 175.62632 * 21 20 19 43 43 H 1.08995 * 109.48142 * 177.71705 * 22 20 19 44 44 H 1.09000 * 109.47816 * 57.68358 * 22 20 19 45 45 H 1.09000 * 109.49302 * 301.66894 * 23 16 15 46 46 H 1.09012 * 109.48765 * 61.71581 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4425 0.0171 5 6 1.5186 2.1597 1.2185 6 1 0.8994 3.0372 1.1047 7 6 1.8320 1.6956 2.4784 8 7 2.5864 0.6273 2.6168 9 14 1.1850 2.5843 3.9887 10 1 0.3657 3.7481 3.5653 11 1 0.3476 1.6550 4.7890 12 1 2.3270 3.0558 4.8127 13 7 1.5693 2.1283 -1.2107 14 6 2.0539 1.4446 -2.4296 15 6 2.2833 2.5810 -3.4587 16 6 2.8102 3.7170 -2.5546 17 6 2.0360 3.5282 -1.2410 18 6 4.3075 3.5571 -2.3247 19 6 4.8153 4.7165 -1.4621 20 7 4.5132 5.9900 -2.1282 21 6 5.1193 7.1177 -1.4079 22 6 3.0653 6.1815 -2.2829 23 6 2.4970 5.0728 -3.1741 24 1 -0.3634 0.5750 0.8516 25 1 -0.3632 0.4501 -0.9239 26 1 -0.3633 -1.0251 0.0721 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.8072 0.3010 3.5033 30 1 2.9891 0.9232 -2.2254 31 1 1.3019 0.7462 -2.7971 32 1 1.3481 2.8668 -3.9401 33 1 3.0295 2.2932 -4.1994 34 1 1.1820 4.2050 -1.2128 35 1 2.6898 3.7202 -0.3903 36 1 4.4982 2.6131 -1.8142 37 1 4.8254 3.5633 -3.2839 38 1 5.8929 4.6239 -1.3266 39 1 4.3232 4.6891 -0.4899 40 1 4.6700 7.2004 -0.4183 41 1 6.1917 6.9503 -1.3073 42 1 4.9461 8.0392 -1.9637 43 1 2.8740 7.1512 -2.7425 44 1 2.5869 6.1422 -1.3043 45 1 2.9497 5.1338 -4.1638 46 1 1.4169 5.1926 -3.2601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:12 Heat of formation + Delta-G solvation = -18.975939 kcal Electronic energy + Delta-G solvation = -22374.782073 eV Core-core repulsion = 19490.807292 eV Total energy + Delta-G solvation = -2883.974782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36538 -38.65089 -36.32778 -33.97745 -32.48667 -31.88039 -30.85430 -28.21040 -27.93793 -25.93433 -24.57360 -24.16520 -23.06025 -22.08075 -20.58874 -19.31600 -18.00557 -17.21539 -16.71366 -16.45712 -16.09206 -15.89572 -15.44011 -15.10035 -14.82835 -14.49350 -14.21170 -14.07335 -13.61090 -13.49896 -13.35973 -13.05716 -12.96210 -12.89616 -12.78255 -12.54061 -12.42351 -12.39040 -12.10579 -12.04668 -11.78704 -11.51548 -11.50064 -11.14886 -11.08411 -10.96842 -10.79352 -10.50317 -9.30345 -8.80818 -8.10300 -6.19111 1.34894 1.37918 1.48272 2.39846 2.99459 3.17828 3.49109 3.64684 3.74619 3.87865 4.17529 4.23215 4.31764 4.40756 4.46618 4.52264 4.59658 4.60823 4.69313 4.71541 4.73830 4.81772 4.84406 4.88226 4.93145 4.98497 5.00034 5.04589 5.08366 5.16344 5.22173 5.27681 5.29884 5.41666 5.45941 5.50286 5.53860 5.73328 5.77006 5.87814 6.07836 6.14339 6.31140 6.46185 6.76949 6.95024 7.48333 8.95415 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.007261 C = 0.005775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.698453 B = 3855.480661 C = 4847.092427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.107 4.107 3 C 0.226 3.774 4 H -0.046 1.046 5 C -0.499 4.499 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.918 5.918 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.283 1.283 13 N -0.529 5.529 14 C 0.042 3.958 15 C -0.105 4.105 16 C -0.076 4.076 17 C 0.071 3.929 18 C -0.092 4.092 19 C 0.058 3.942 20 N -0.541 5.541 21 C 0.023 3.977 22 C 0.053 3.947 23 C -0.089 4.089 24 H 0.034 0.966 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.026 0.974 28 H 0.059 0.941 29 H 0.259 0.741 30 H 0.021 0.979 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.028 0.972 36 H 0.039 0.961 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.010 0.990 40 H 0.014 0.986 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.015 0.985 45 H 0.084 0.916 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 8.820 -12.123 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.145 4.145 3 C 0.118 3.882 4 H -0.029 1.029 5 C -0.538 4.538 6 H 0.066 0.934 7 C -0.183 4.183 8 N -0.559 5.559 9 Si 0.773 3.227 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.209 1.209 13 N -0.253 5.253 14 C -0.086 4.086 15 C -0.143 4.143 16 C -0.077 4.077 17 C -0.057 4.057 18 C -0.130 4.130 19 C -0.071 4.071 20 N -0.266 5.266 21 C -0.125 4.125 22 C -0.075 4.075 23 C -0.127 4.127 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.028 0.972 40 H 0.032 0.968 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.034 0.966 45 H 0.102 0.898 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.962 8.679 -12.413 15.273 hybrid contribution 0.427 0.025 2.423 2.461 sum 2.389 8.704 -9.990 13.463 Atomic orbital electron populations 1.21310 0.95756 0.98464 1.00867 1.21415 0.96498 0.97582 0.99008 1.19140 0.89996 0.91736 0.87290 1.02865 1.21242 1.30267 1.11358 0.90905 0.93387 1.25568 0.95621 0.95803 1.01349 1.70017 1.38453 1.24226 1.23157 0.85681 0.78145 0.78864 0.80049 1.19481 1.20483 1.20934 1.63642 1.57734 1.01776 1.02174 1.23024 0.97428 0.97212 0.90940 1.22667 1.01793 0.93400 0.96455 1.21298 0.94651 0.96759 0.95001 1.22565 0.96508 0.90615 0.95979 1.21356 0.95017 0.96240 1.00370 1.22061 1.00332 0.89997 0.94661 1.62010 1.12204 1.02072 1.50294 1.22423 0.99955 0.94058 0.96047 1.22193 0.86924 1.00067 0.98302 1.21402 1.00760 0.91390 0.99108 0.94638 0.93033 0.94581 0.95524 0.92264 0.93144 0.96096 0.90933 0.89735 0.89481 0.92877 0.95380 0.94261 0.89722 0.90394 0.97211 0.96751 0.90773 0.89580 0.88872 0.96620 0.89777 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.76 9.52 71.98 0.69 -4.07 16 2 C -0.11 -5.24 5.26 30.59 0.16 -5.08 16 3 C 0.23 11.56 1.35 44.17 0.06 11.62 16 4 H -0.05 -2.69 8.10 -2.38 -0.02 -2.71 16 5 C -0.50 -27.67 6.31 25.60 0.16 -27.51 16 6 H 0.05 2.72 7.42 -2.91 -0.02 2.70 16 7 C 0.01 0.84 5.30 84.65 0.45 1.29 16 8 N -0.92 -53.47 11.33 21.45 0.24 -53.23 16 9 Si 0.95 44.58 29.54 68.60 2.03 46.60 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 N -0.53 -22.65 4.38 -865.29 -3.79 -26.44 16 14 C 0.04 1.49 5.09 86.80 0.44 1.93 16 15 C -0.11 -2.89 5.98 31.78 0.19 -2.69 16 16 C -0.08 -2.26 0.53 -51.92 -0.03 -2.28 16 17 C 0.07 2.80 4.26 86.39 0.37 3.17 16 18 C -0.09 -2.78 4.71 30.43 0.14 -2.64 16 19 C 0.06 1.73 5.30 86.37 0.46 2.19 16 20 N -0.54 -13.88 4.89 -921.94 -4.51 -18.39 16 21 C 0.02 0.50 9.59 127.69 1.22 1.72 16 22 C 0.05 1.31 5.31 86.37 0.46 1.77 16 23 C -0.09 -2.13 4.73 30.43 0.14 -1.99 16 24 H 0.03 1.72 7.05 -2.39 -0.02 1.71 16 25 H 0.05 2.15 7.76 -2.38 -0.02 2.13 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.03 1.19 7.02 -2.39 -0.02 1.18 16 28 H 0.06 3.28 6.10 -2.38 -0.01 3.27 16 29 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.02 0.80 7.29 -2.39 -0.02 0.78 16 31 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 32 H 0.08 2.10 8.02 -2.39 -0.02 2.08 16 33 H 0.09 2.02 8.01 -2.38 -0.02 2.00 16 34 H 0.05 2.09 7.72 -2.39 -0.02 2.07 16 35 H 0.03 1.29 5.18 -2.39 -0.01 1.27 16 36 H 0.04 1.40 7.62 -2.39 -0.02 1.38 16 37 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 39 H 0.01 0.36 6.60 -2.39 -0.02 0.34 16 40 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.07 1.46 8.08 -2.39 -0.02 1.44 16 42 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 1.87 8.12 -2.39 -0.02 1.85 16 44 H 0.02 0.46 7.57 -2.39 -0.02 0.44 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.08 1.73 8.03 -2.38 -0.02 1.71 16 Total: -1.00 -61.22 335.62 -0.20 -61.43 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.91 Total: 12.61 kcal Atomic # 6 Polarization: -27.49 SS G_CDS: 4.92 Total: -22.58 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -8.06 Total: -98.06 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -61.22 -0.20 -61.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.450 kcal (2) G-P(sol) polarization free energy of solvation -61.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds