Wall clock time and date at job start Mon Mar 30 2020 01:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.46993 * 2 1 4 4 H 1.09004 * 109.47224 * 54.68237 * 3 2 1 5 5 C 1.50704 * 109.47172 * 174.67672 * 3 2 1 6 6 H 1.07996 * 119.99845 * 114.69110 * 5 3 2 7 7 C 1.37881 * 120.00034 * 294.69691 * 5 3 2 8 8 N 1.31514 * 119.99890 * 353.06588 * 7 5 3 9 9 Si 1.86798 * 119.99852 * 173.07319 * 7 5 3 10 10 H 1.48495 * 109.46965 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46951 * 299.99503 * 9 7 5 12 12 H 1.48501 * 109.47288 * 59.99654 * 9 7 5 13 13 N 1.46900 * 109.47716 * 294.68008 * 3 2 1 14 14 C 1.47024 * 110.99628 * 279.53709 * 13 3 2 15 15 C 1.53055 * 109.32736 * 177.42410 * 14 13 3 16 16 N 1.46954 * 109.44555 * 58.72117 * 15 14 13 17 17 C 1.46904 * 110.99879 * 176.52707 * 16 15 14 18 18 C 1.47021 * 110.84195 * 300.37273 * 16 15 14 19 19 C 1.46589 * 111.00155 * 155.71111 * 13 3 2 20 20 C 1.54003 * 109.78341 * 61.19585 * 19 13 3 21 21 C 1.54948 * 104.12267 * 217.20126 * 20 19 13 22 22 C 1.54918 * 102.78215 * 37.71300 * 21 20 19 23 23 C 1.53584 * 110.05994 * 303.80850 * 19 13 3 24 24 H 1.09002 * 109.47365 * 65.00809 * 1 2 3 25 25 H 1.09001 * 109.47177 * 185.01182 * 1 2 3 26 26 H 1.09004 * 109.47245 * 305.00814 * 1 2 3 27 27 H 1.09008 * 109.47085 * 240.00514 * 2 1 3 28 28 H 1.08996 * 109.47572 * 120.00462 * 2 1 3 29 29 H 0.97003 * 120.00168 * 356.59042 * 8 7 5 30 30 H 1.08992 * 109.49793 * 297.37861 * 14 13 3 31 31 H 1.08999 * 109.49975 * 57.47179 * 14 13 3 32 32 H 1.09000 * 109.47592 * 178.71253 * 15 14 13 33 33 H 1.09004 * 109.47892 * 298.72555 * 15 14 13 34 34 H 1.09006 * 109.46810 * 63.95753 * 17 16 15 35 35 H 1.09003 * 109.47022 * 183.95509 * 17 16 15 36 36 H 1.08995 * 109.47401 * 303.95842 * 17 16 15 37 37 H 1.08997 * 109.48412 * 178.67544 * 18 16 15 38 38 H 1.09002 * 109.48699 * 298.72787 * 18 16 15 39 39 H 1.08993 * 110.49725 * 335.86593 * 20 19 13 40 40 H 1.09002 * 110.49740 * 98.54662 * 20 19 13 41 41 H 1.08996 * 110.75535 * 279.38560 * 21 20 19 42 42 H 1.09001 * 110.90660 * 156.10050 * 21 20 19 43 43 H 1.08997 * 110.48405 * 203.53932 * 22 21 20 44 44 H 1.08998 * 110.60060 * 80.95046 * 22 21 20 45 45 H 1.08999 * 110.05190 * 238.37093 * 23 19 13 46 46 H 1.09004 * 110.04880 * 359.79885 * 23 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6009 1.9831 0.8386 5 6 3.5411 1.4446 0.1318 6 1 4.1539 1.8096 -0.6791 7 6 4.1324 0.9804 1.2877 8 7 3.3888 0.6642 2.3254 9 14 5.9894 0.8010 1.3799 10 1 6.3712 0.2875 2.7199 11 1 6.4472 -0.1505 0.3358 12 1 6.6262 2.1240 1.1575 13 7 1.6579 2.0971 -1.2584 14 6 2.5793 1.7302 -2.3438 15 6 2.1102 2.3799 -3.6478 16 7 2.0652 3.8390 -3.4789 17 6 1.6977 4.5035 -4.7364 18 6 1.1427 4.2121 -2.3966 19 6 1.5948 3.5525 -1.0955 20 6 2.9795 4.0924 -0.6921 21 6 2.6641 5.2295 0.3120 22 6 1.4583 4.6636 1.1031 23 6 0.6267 3.9139 0.0407 24 1 -0.3634 0.4342 -0.9314 25 1 -0.3633 -1.0237 0.0898 26 1 -0.3634 0.5896 0.8418 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.4294 0.8039 2.2952 30 1 3.5828 2.0809 -2.1033 31 1 2.5905 0.6466 -2.4609 32 1 2.8044 2.1282 -4.4496 33 1 1.1154 2.0124 -3.8997 34 1 0.6862 4.2119 -5.0193 35 1 1.7401 5.5844 -4.6021 36 1 2.3940 4.2073 -5.5209 37 1 1.1441 5.2952 -2.2748 38 1 0.1361 3.8751 -2.6444 39 1 3.5686 3.3113 -0.2117 40 1 3.5039 4.4865 -1.5627 41 1 2.3866 6.1431 -0.2137 42 1 3.5106 5.4091 0.9748 43 1 0.8756 5.4737 1.5415 44 1 1.7968 3.9756 1.8778 45 1 -0.1674 4.5587 -0.3358 46 1 0.1997 3.0076 0.4703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:46 Heat of formation + Delta-G solvation = 13.304580 kcal Electronic energy + Delta-G solvation = -23247.698590 eV Core-core repulsion = 20365.123597 eV Total energy + Delta-G solvation = -2882.574993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.01534 -36.31508 -35.35235 -32.55069 -31.28334 -29.76772 -28.04502 -28.01779 -25.47308 -24.47245 -23.53090 -22.63247 -20.92116 -19.79656 -19.60054 -17.60559 -16.61536 -15.77169 -15.31089 -14.85197 -14.59004 -13.98463 -13.71951 -13.61628 -13.37175 -13.04771 -12.64360 -12.43480 -12.15193 -12.07321 -11.80649 -11.65647 -11.11966 -11.04784 -10.88266 -10.58055 -10.48065 -10.41591 -10.34009 -10.20033 -10.13179 -10.04643 -9.92144 -9.61632 -9.57889 -9.28949 -8.67855 -8.26254 -7.99321 -6.92717 -6.32185 -4.03617 3.42619 3.43960 3.61385 4.28026 4.51617 4.91151 5.24614 5.30208 5.33767 5.44599 5.49956 5.62052 5.67664 5.76101 5.91832 5.94037 5.98195 6.00807 6.05714 6.17779 6.23721 6.24464 6.34020 6.38003 6.44155 6.53170 6.57337 6.62569 6.63033 6.80866 6.83385 6.91348 6.96634 7.02348 7.10237 7.20839 7.35897 7.38238 7.45479 7.54234 7.66746 7.99105 8.22714 8.42596 8.58826 8.83147 9.62440 11.00339 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.017232 B = 0.008463 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.518591 B = 3307.893934 C = 3372.150699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.197 3.803 4 H 0.040 0.960 5 C -0.618 4.618 6 H 0.065 0.935 7 C 0.029 3.971 8 N -0.904 5.904 9 Si 1.053 2.947 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.523 5.523 14 C 0.064 3.936 15 C 0.056 3.944 16 N -0.538 5.538 17 C 0.027 3.973 18 C 0.076 3.924 19 C 0.124 3.876 20 C -0.180 4.180 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.110 4.110 24 H 0.050 0.950 25 H 0.027 0.973 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.273 0.727 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.030 0.970 34 H 0.019 0.981 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.029 0.971 39 H 0.138 0.862 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.094 5.920 -8.189 10.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C 0.091 3.909 4 H 0.058 0.942 5 C -0.656 4.656 6 H 0.083 0.917 7 C -0.177 4.177 8 N -0.539 5.539 9 Si 0.882 3.118 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.246 5.246 14 C -0.064 4.064 15 C -0.072 4.072 16 N -0.263 5.263 17 C -0.122 4.122 18 C -0.053 4.053 19 C 0.033 3.967 20 C -0.218 4.218 21 C -0.155 4.155 22 C -0.157 4.157 23 C -0.148 4.148 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.037 0.963 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.155 0.845 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.879 5.391 -7.207 9.450 hybrid contribution -1.295 0.586 -1.133 1.818 sum -4.174 5.977 -8.340 11.077 Atomic orbital electron populations 1.21705 0.98458 0.98656 1.00750 1.21600 0.92734 0.99798 1.00762 1.19439 0.94184 0.90245 0.87081 0.94199 1.22509 0.92590 1.46413 1.04091 0.91701 1.25595 1.06156 0.93552 0.92410 1.70781 1.08118 1.44245 1.30785 0.83759 0.75352 0.76557 0.76085 1.20931 1.21522 1.21508 1.62526 1.48932 1.05564 1.07568 1.22027 0.96586 0.98731 0.89081 1.22282 0.99303 0.86809 0.98835 1.62134 1.50627 1.08305 1.05205 1.22316 0.98398 0.99307 0.92139 1.22161 0.92997 0.98894 0.91214 1.21189 0.94684 0.88780 0.92043 1.23839 0.98883 1.00265 0.98765 1.22354 0.97348 0.97724 0.98024 1.22314 0.96546 0.98770 0.98052 1.22156 0.97093 0.99996 0.95591 0.93057 0.95347 0.94323 0.94088 0.91882 0.91600 0.92293 0.91379 0.91571 0.95215 0.96291 0.91941 0.91870 0.91527 0.95305 0.84523 0.92465 0.93570 0.92730 0.93242 0.91269 0.93125 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.74 37.15 0.36 -2.32 16 2 C -0.11 -2.46 5.20 -26.74 -0.14 -2.60 16 3 C 0.20 4.47 0.78 -68.86 -0.05 4.42 16 4 H 0.04 0.99 4.55 -51.93 -0.24 0.75 16 5 C -0.62 -15.40 5.20 -34.44 -0.18 -15.58 16 6 H 0.07 1.65 4.45 -52.49 -0.23 1.42 16 7 C 0.03 0.77 5.20 -17.82 -0.09 0.67 16 8 N -0.90 -25.32 12.86 55.43 0.71 -24.61 16 9 Si 1.05 24.15 29.91 -169.99 -5.08 19.07 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.52 -10.51 3.93 -211.78 -0.83 -11.34 16 14 C 0.06 1.25 4.57 -3.73 -0.02 1.23 16 15 C 0.06 0.92 5.61 -3.77 -0.02 0.90 16 16 N -0.54 -8.66 4.22 -242.91 -1.02 -9.68 16 17 C 0.03 0.35 9.61 60.07 0.58 0.92 16 18 C 0.08 1.26 4.02 -3.90 -0.02 1.24 16 19 C 0.12 2.31 0.58 -131.09 -0.08 2.23 16 20 C -0.18 -3.57 4.48 -25.18 -0.11 -3.68 16 21 C -0.12 -2.08 6.91 -24.69 -0.17 -2.25 16 22 C -0.12 -2.12 6.64 -25.01 -0.17 -2.29 16 23 C -0.11 -1.98 5.39 -25.72 -0.14 -2.12 16 24 H 0.05 0.97 7.90 -51.93 -0.41 0.56 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.92 7.02 -51.92 -0.36 0.55 16 28 H 0.06 1.56 6.31 -51.93 -0.33 1.24 16 29 H 0.27 7.62 6.17 -40.82 -0.25 7.37 16 30 H 0.06 1.28 4.93 -51.93 -0.26 1.02 16 31 H 0.07 1.36 7.01 -51.93 -0.36 1.00 16 32 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.14 3.20 3.41 -51.93 -0.18 3.02 16 40 H 0.06 1.14 7.27 -51.93 -0.38 0.77 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.40 7.77 -51.93 -0.40 1.00 16 45 H 0.05 0.81 7.67 -51.93 -0.40 0.41 16 46 H 0.07 1.45 6.39 -51.93 -0.33 1.12 16 LS Contribution 324.67 15.07 4.89 4.89 Total: -1.00 -25.99 324.67 -9.58 -35.57 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -8.00 Total: 5.32 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -0.24 Total: -19.21 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -1.14 Total: -45.63 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.08 Total: 19.07 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -25.99 -9.58 -35.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.872 kcal (2) G-P(sol) polarization free energy of solvation -25.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds