Wall clock time and date at job start Mon Mar 30 2020 01:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.46993 * 2 1 4 4 H 1.09004 * 109.47224 * 54.68237 * 3 2 1 5 5 C 1.50704 * 109.47172 * 174.67672 * 3 2 1 6 6 H 1.07996 * 119.99845 * 114.69110 * 5 3 2 7 7 C 1.37881 * 120.00034 * 294.69691 * 5 3 2 8 8 N 1.31514 * 119.99890 * 353.06588 * 7 5 3 9 9 Si 1.86798 * 119.99852 * 173.07319 * 7 5 3 10 10 H 1.48495 * 109.46965 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46951 * 299.99503 * 9 7 5 12 12 H 1.48501 * 109.47288 * 59.99654 * 9 7 5 13 13 N 1.46900 * 109.47716 * 294.68008 * 3 2 1 14 14 C 1.47024 * 110.99628 * 279.53709 * 13 3 2 15 15 C 1.53055 * 109.32736 * 177.42410 * 14 13 3 16 16 N 1.46954 * 109.44555 * 58.72117 * 15 14 13 17 17 C 1.46904 * 110.99879 * 176.52707 * 16 15 14 18 18 C 1.47021 * 110.84195 * 300.37273 * 16 15 14 19 19 C 1.46589 * 111.00155 * 155.71111 * 13 3 2 20 20 C 1.54003 * 109.78341 * 61.19585 * 19 13 3 21 21 C 1.54948 * 104.12267 * 217.20126 * 20 19 13 22 22 C 1.54918 * 102.78215 * 37.71300 * 21 20 19 23 23 C 1.53584 * 110.05994 * 303.80850 * 19 13 3 24 24 H 1.09002 * 109.47365 * 65.00809 * 1 2 3 25 25 H 1.09001 * 109.47177 * 185.01182 * 1 2 3 26 26 H 1.09004 * 109.47245 * 305.00814 * 1 2 3 27 27 H 1.09008 * 109.47085 * 240.00514 * 2 1 3 28 28 H 1.08996 * 109.47572 * 120.00462 * 2 1 3 29 29 H 0.97003 * 120.00168 * 356.59042 * 8 7 5 30 30 H 1.08992 * 109.49793 * 297.37861 * 14 13 3 31 31 H 1.08999 * 109.49975 * 57.47179 * 14 13 3 32 32 H 1.09000 * 109.47592 * 178.71253 * 15 14 13 33 33 H 1.09004 * 109.47892 * 298.72555 * 15 14 13 34 34 H 1.09006 * 109.46810 * 63.95753 * 17 16 15 35 35 H 1.09003 * 109.47022 * 183.95509 * 17 16 15 36 36 H 1.08995 * 109.47401 * 303.95842 * 17 16 15 37 37 H 1.08997 * 109.48412 * 178.67544 * 18 16 15 38 38 H 1.09002 * 109.48699 * 298.72787 * 18 16 15 39 39 H 1.08993 * 110.49725 * 335.86593 * 20 19 13 40 40 H 1.09002 * 110.49740 * 98.54662 * 20 19 13 41 41 H 1.08996 * 110.75535 * 279.38560 * 21 20 19 42 42 H 1.09001 * 110.90660 * 156.10050 * 21 20 19 43 43 H 1.08997 * 110.48405 * 203.53932 * 22 21 20 44 44 H 1.08998 * 110.60060 * 80.95046 * 22 21 20 45 45 H 1.08999 * 110.05190 * 238.37093 * 23 19 13 46 46 H 1.09004 * 110.04880 * 359.79885 * 23 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6009 1.9831 0.8386 5 6 3.5411 1.4446 0.1318 6 1 4.1539 1.8096 -0.6791 7 6 4.1324 0.9804 1.2877 8 7 3.3888 0.6642 2.3254 9 14 5.9894 0.8010 1.3799 10 1 6.3712 0.2875 2.7199 11 1 6.4472 -0.1505 0.3358 12 1 6.6262 2.1240 1.1575 13 7 1.6579 2.0971 -1.2584 14 6 2.5793 1.7302 -2.3438 15 6 2.1102 2.3799 -3.6478 16 7 2.0652 3.8390 -3.4789 17 6 1.6977 4.5035 -4.7364 18 6 1.1427 4.2121 -2.3966 19 6 1.5948 3.5525 -1.0955 20 6 2.9795 4.0924 -0.6921 21 6 2.6641 5.2295 0.3120 22 6 1.4583 4.6636 1.1031 23 6 0.6267 3.9139 0.0407 24 1 -0.3634 0.4342 -0.9314 25 1 -0.3633 -1.0237 0.0898 26 1 -0.3634 0.5896 0.8418 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.4294 0.8039 2.2952 30 1 3.5828 2.0809 -2.1033 31 1 2.5905 0.6466 -2.4609 32 1 2.8044 2.1282 -4.4496 33 1 1.1154 2.0124 -3.8997 34 1 0.6862 4.2119 -5.0193 35 1 1.7401 5.5844 -4.6021 36 1 2.3940 4.2073 -5.5209 37 1 1.1441 5.2952 -2.2748 38 1 0.1361 3.8751 -2.6444 39 1 3.5686 3.3113 -0.2117 40 1 3.5039 4.4865 -1.5627 41 1 2.3866 6.1431 -0.2137 42 1 3.5106 5.4091 0.9748 43 1 0.8756 5.4737 1.5415 44 1 1.7968 3.9756 1.8778 45 1 -0.1674 4.5587 -0.3358 46 1 0.1997 3.0076 0.4703 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:45 Heat of formation + Delta-G solvation = -1.568455 kcal Electronic energy + Delta-G solvation = -23248.343534 eV Core-core repulsion = 20365.123597 eV Total energy + Delta-G solvation = -2883.219936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53912 -37.69932 -37.00823 -34.31153 -33.03584 -31.19824 -29.56526 -29.47088 -27.15286 -25.95262 -25.07251 -24.24765 -22.39499 -21.51606 -21.09999 -19.29293 -18.33814 -17.31890 -16.79170 -16.33968 -15.93067 -15.61762 -15.42479 -15.13808 -14.82508 -14.73448 -14.14320 -13.98571 -13.69092 -13.37374 -13.34374 -12.94304 -12.69776 -12.56318 -12.54394 -12.31359 -12.08538 -11.99691 -11.93942 -11.86454 -11.74063 -11.62585 -11.49326 -11.24729 -11.21692 -10.94953 -10.49075 -10.27720 -9.22520 -8.66552 -8.37816 -6.09861 1.53251 1.57787 1.75791 2.60333 3.06507 3.27008 3.35352 3.86044 3.91514 4.06790 4.23952 4.30166 4.37241 4.45278 4.51867 4.54645 4.62481 4.67744 4.70203 4.73558 4.75207 4.79672 4.89126 4.93062 5.01465 5.02322 5.04546 5.10599 5.14589 5.17923 5.22563 5.30150 5.35741 5.44373 5.47419 5.55182 5.64351 5.72535 5.89986 6.06900 6.15163 6.24046 6.31340 6.69527 6.73637 6.81443 7.61122 8.91358 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.017232 B = 0.008463 C = 0.008301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.518591 B = 3307.893934 C = 3372.150699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.106 4.106 3 C 0.206 3.794 4 H 0.019 0.981 5 C -0.603 4.603 6 H 0.059 0.941 7 C -0.019 4.019 8 N -0.934 5.934 9 Si 1.091 2.909 10 H -0.291 1.291 11 H -0.277 1.277 12 H -0.278 1.278 13 N -0.519 5.519 14 C 0.067 3.933 15 C 0.066 3.934 16 N -0.552 5.552 17 C 0.029 3.971 18 C 0.083 3.917 19 C 0.119 3.881 20 C -0.175 4.175 21 C -0.111 4.111 22 C -0.115 4.115 23 C -0.108 4.108 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.033 0.967 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.031 0.969 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.078 0.922 44 H 0.031 0.969 45 H 0.078 0.922 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.908 7.542 -10.264 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.099 3.901 4 H 0.037 0.963 5 C -0.642 4.642 6 H 0.077 0.923 7 C -0.219 4.219 8 N -0.571 5.571 9 Si 0.917 3.083 10 H -0.217 1.217 11 H -0.203 1.203 12 H -0.204 1.204 13 N -0.242 5.242 14 C -0.062 4.062 15 C -0.062 4.062 16 N -0.277 5.277 17 C -0.119 4.119 18 C -0.046 4.046 19 C 0.029 3.971 20 C -0.214 4.214 21 C -0.149 4.149 22 C -0.153 4.153 23 C -0.146 4.146 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.050 0.950 45 H 0.097 0.903 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.695 7.024 -9.313 12.236 hybrid contribution -1.038 0.121 -0.538 1.176 sum -4.733 7.145 -9.850 13.057 Atomic orbital electron populations 1.21551 0.95854 0.99840 1.00933 1.21469 0.95023 0.99059 0.98907 1.19200 0.92663 0.90462 0.87816 0.96294 1.22731 0.93974 1.44292 1.03180 0.92340 1.26605 1.08953 0.93798 0.92581 1.70873 1.07562 1.46886 1.31807 0.83241 0.72104 0.77122 0.75869 1.21693 1.20279 1.20421 1.62522 1.48596 1.06738 1.06347 1.21965 0.95300 0.98333 0.90578 1.22141 0.99716 0.87259 0.97109 1.62114 1.50959 1.07891 1.06707 1.22373 0.99124 0.99730 0.90679 1.22068 0.92992 0.99453 0.90042 1.21331 0.94189 0.87722 0.93878 1.23603 0.99098 0.99878 0.98788 1.22338 0.97060 0.98036 0.97500 1.22251 0.96952 0.98834 0.97234 1.22142 0.97550 0.99629 0.95278 0.92309 0.93562 0.94640 0.94643 0.94876 0.92848 0.94817 0.92593 0.89793 0.94919 0.95518 0.90654 0.90660 0.89892 0.95063 0.88405 0.92609 0.90737 0.93511 0.90363 0.94962 0.90330 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 9.74 71.98 0.70 -4.08 16 2 C -0.11 -4.85 5.20 30.59 0.16 -4.69 16 3 C 0.21 9.61 0.78 44.17 0.03 9.65 16 4 H 0.02 0.99 4.55 -2.38 -0.01 0.98 16 5 C -0.60 -31.05 5.20 25.60 0.13 -30.92 16 6 H 0.06 3.07 4.45 -2.91 -0.01 3.06 16 7 C -0.02 -1.04 5.20 84.66 0.44 -0.60 16 8 N -0.93 -54.54 12.86 21.45 0.28 -54.26 16 9 Si 1.09 49.95 29.91 68.60 2.05 52.01 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 N -0.52 -20.75 3.93 -823.93 -3.24 -23.99 16 14 C 0.07 2.58 4.57 86.30 0.39 2.97 16 15 C 0.07 2.03 5.61 86.31 0.48 2.52 16 16 N -0.55 -16.09 4.22 -922.43 -3.89 -19.98 16 17 C 0.03 0.62 9.61 127.69 1.23 1.85 16 18 C 0.08 2.49 4.02 86.19 0.35 2.84 16 19 C 0.12 4.29 0.58 4.03 0.00 4.29 16 20 C -0.18 -6.87 4.48 31.60 0.14 -6.73 16 21 C -0.11 -3.82 6.91 31.92 0.22 -3.60 16 22 C -0.11 -4.00 6.64 31.71 0.21 -3.79 16 23 C -0.11 -3.72 5.39 31.25 0.17 -3.56 16 24 H 0.06 2.16 7.90 -2.39 -0.02 2.14 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.03 1.62 7.02 -2.38 -0.02 1.60 16 28 H 0.03 1.70 6.31 -2.39 -0.02 1.69 16 29 H 0.26 15.40 6.17 -92.71 -0.57 14.83 16 30 H 0.03 1.47 4.93 -2.39 -0.01 1.46 16 31 H 0.06 2.25 7.01 -2.39 -0.02 2.23 16 32 H 0.08 2.29 8.13 -2.39 -0.02 2.27 16 33 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 1.46 8.12 -2.39 -0.02 1.44 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.10 4.67 3.41 -2.39 -0.01 4.67 16 40 H 0.06 2.16 7.27 -2.39 -0.02 2.14 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.03 1.34 7.77 -2.39 -0.02 1.32 16 45 H 0.08 2.27 7.67 -2.39 -0.02 2.25 16 46 H 0.05 2.06 6.39 -2.39 -0.02 2.05 16 Total: -1.00 -57.59 324.67 1.00 -56.60 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 1.14 Total: 23.47 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 4.66 Total: -33.85 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -6.85 Total: -98.23 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.01 kcal Total: -57.59 1.00 -56.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.030 kcal (2) G-P(sol) polarization free energy of solvation -57.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds