Wall clock time and date at job start Mon Mar 30 2020 01:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47413 * 2 1 4 4 N 1.46907 * 109.46986 * 180.02562 * 3 2 1 5 5 C 1.48515 * 110.99704 * 285.39548 * 4 3 2 6 6 C 1.54286 * 104.71366 * 200.72660 * 5 4 3 7 7 H 1.09005 * 112.83972 * 261.18068 * 6 5 4 8 8 C 1.54283 * 108.81680 * 135.72955 * 6 5 4 9 9 N 1.48520 * 104.71576 * 224.27065 * 8 6 5 10 10 C 1.46893 * 111.00127 * 159.27549 * 9 8 6 11 11 H 1.09008 * 109.47417 * 301.16298 * 10 9 8 12 12 C 1.50698 * 109.47090 * 61.16462 * 10 9 8 13 13 H 1.07998 * 120.00353 * 359.97438 * 12 10 9 14 14 C 1.37879 * 120.00018 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99999 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00193 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47351 * 59.99580 * 16 14 12 18 18 H 1.48496 * 109.47351 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46761 * 300.00099 * 16 14 12 20 20 C 1.53000 * 109.47518 * 181.16747 * 10 9 8 21 21 C 1.53007 * 109.46839 * 299.17116 * 20 10 9 22 22 C 1.48520 * 104.20301 * 39.72989 * 9 8 6 23 23 C 1.54294 * 104.71450 * 320.27054 * 22 9 8 24 24 H 1.08991 * 112.37936 * 261.44545 * 23 22 9 25 25 C 1.48522 * 110.99710 * 170.00170 * 4 3 2 26 26 H 1.09005 * 109.46501 * 59.99791 * 1 2 3 27 27 H 1.08997 * 109.47436 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46788 * 300.00331 * 1 2 3 29 29 H 1.09003 * 109.47262 * 239.99697 * 2 1 3 30 30 H 1.08999 * 109.47137 * 119.99980 * 2 1 3 31 31 H 1.08999 * 109.47414 * 60.00052 * 3 2 1 32 32 H 1.08996 * 109.47177 * 299.99607 * 3 2 1 33 33 H 1.09004 * 110.38511 * 81.91864 * 5 4 3 34 34 H 1.08997 * 110.39029 * 319.53630 * 5 4 3 35 35 H 1.08999 * 110.38942 * 343.08373 * 8 6 5 36 36 H 1.09003 * 110.39000 * 105.35412 * 8 6 5 37 37 H 0.97000 * 119.99973 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.47130 * 59.16372 * 20 10 9 39 39 H 1.08991 * 109.47257 * 179.17177 * 20 10 9 40 40 H 1.08996 * 109.47031 * 183.68308 * 21 20 10 41 41 H 1.09001 * 109.46675 * 303.68662 * 21 20 10 42 42 H 1.09002 * 109.47214 * 63.68223 * 21 20 10 43 43 H 1.08997 * 110.39114 * 79.08035 * 22 9 8 44 44 H 1.08998 * 110.39173 * 201.46425 * 22 9 8 45 45 H 1.08993 * 110.39009 * 40.46376 * 25 4 3 46 46 H 1.09001 * 110.38354 * 278.08009 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0418 1.0740 1.3359 6 6 5.4853 1.6187 1.3461 7 1 6.2282 0.8526 1.1238 8 6 5.7452 2.3142 2.6986 9 7 6.4417 3.5775 2.3455 10 6 6.3260 4.5629 3.4287 11 1 5.2731 4.7672 3.6233 12 6 6.9704 4.0159 4.6763 13 1 7.4205 3.0342 4.6657 14 6 6.9845 4.7683 5.8316 15 7 6.4352 5.9631 5.8450 16 14 7.7840 4.0906 7.3779 17 1 9.2185 3.8133 7.1128 18 1 7.6659 5.0861 8.4734 19 1 7.1024 2.8329 7.7770 20 6 7.0291 5.8581 3.0174 21 6 8.5114 5.5754 2.7643 22 6 5.7446 4.0481 1.1213 23 6 5.4850 2.7671 0.3013 24 1 6.2276 2.6184 -0.4824 25 6 4.0413 2.8079 -0.2414 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 4.0438 -0.0091 1.4585 34 1 3.4526 1.5451 2.1226 35 1 4.8028 2.5282 3.2028 36 1 6.3800 1.6922 3.3297 37 1 6.4448 6.4923 6.6579 38 1 6.5726 6.2458 2.1067 39 1 6.9306 6.5941 3.8151 40 1 9.0253 6.5089 2.5351 41 1 8.9527 5.1266 3.6542 42 1 8.6121 4.8892 1.9234 43 1 4.8022 4.5295 1.3822 44 1 6.3806 4.7343 0.5622 45 1 3.4520 3.5464 0.3020 46 1 4.0429 3.0322 -1.3081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:37 Heat of formation + Delta-G solvation = 0.344335 kcal Electronic energy + Delta-G solvation = -21529.359217 eV Core-core repulsion = 18646.222226 eV Total energy + Delta-G solvation = -2883.136992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.89925 -36.96608 -34.70984 -32.94048 -31.30180 -30.21210 -29.53932 -26.67761 -25.52080 -25.11052 -23.24296 -21.89547 -21.15237 -20.60279 -19.24796 -18.54597 -16.41853 -15.99360 -15.43486 -15.27590 -14.69140 -14.51500 -13.97998 -13.66705 -13.52182 -13.12768 -12.70330 -12.48160 -12.24354 -11.97429 -11.89514 -11.75475 -11.54105 -11.48621 -11.06337 -10.98264 -10.89411 -10.73906 -10.59612 -10.52284 -10.37665 -10.25496 -10.18643 -9.86643 -9.64349 -9.34670 -8.80341 -8.46698 -8.38302 -7.26956 -6.00033 -4.03503 3.31886 3.36557 3.39446 4.02118 4.41224 4.68590 4.71773 4.92096 5.00597 5.14604 5.24281 5.29915 5.38049 5.41476 5.45406 5.58279 5.61457 5.70038 5.73474 5.79848 5.85870 5.89361 6.02923 6.06913 6.11128 6.19065 6.23302 6.38952 6.47970 6.58478 6.63603 6.66803 6.72725 6.81707 6.91652 7.10286 7.14681 7.25255 7.40862 7.61884 7.73428 7.83988 8.10560 8.34001 8.56045 9.01424 9.60378 11.06585 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.004757 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.161900 B = 5885.076365 C = 6464.052716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.043 3.957 4 N -0.513 5.513 5 C 0.038 3.962 6 C -0.094 4.094 7 H 0.087 0.913 8 C 0.055 3.945 9 N -0.499 5.499 10 C 0.208 3.792 11 H -0.004 1.004 12 C -0.497 4.497 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.108 4.108 21 C -0.120 4.120 22 C 0.038 3.962 23 C -0.090 4.090 24 H 0.088 0.912 25 C 0.038 3.962 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.046 0.954 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.260 0.740 38 H 0.011 0.989 39 H 0.090 0.910 40 H 0.015 0.985 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.032 0.968 44 H 0.071 0.929 45 H 0.044 0.956 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 -7.772 -11.044 15.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.086 4.086 4 N -0.237 5.237 5 C -0.090 4.090 6 C -0.114 4.114 7 H 0.106 0.894 8 C -0.074 4.074 9 N -0.224 5.224 10 C 0.101 3.899 11 H 0.014 0.986 12 C -0.535 4.535 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.147 4.147 21 C -0.178 4.178 22 C -0.091 4.091 23 C -0.110 4.110 24 H 0.106 0.894 25 C -0.090 4.090 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.108 0.892 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.652 -8.046 -11.395 15.454 hybrid contribution -0.833 0.541 1.742 2.005 sum -7.485 -7.505 -9.653 14.336 Atomic orbital electron populations 1.21748 0.95882 1.01595 1.01704 1.21454 0.95054 0.96431 1.02590 1.22307 0.88348 0.97209 1.00720 1.65396 1.07326 1.23152 1.27814 1.23291 0.95218 1.00746 0.89736 1.22705 0.95499 0.97193 0.95965 0.89431 1.22965 0.97336 0.92952 0.94142 1.65459 1.48138 1.04241 1.04529 1.19440 0.94431 0.88235 0.87790 0.98602 1.20996 1.36463 1.02362 0.93700 0.92165 1.24899 0.95579 0.94898 0.98692 1.69873 1.45005 1.10409 1.27949 0.86640 0.80052 0.78546 0.82658 1.20194 1.21419 1.20421 1.21502 0.94873 0.99859 0.98425 1.21462 0.97154 0.97795 1.01343 1.23154 0.96998 0.95354 0.93597 1.22623 0.95418 0.95498 0.97420 0.89396 1.23243 0.95224 0.89723 1.00844 0.92806 0.92649 0.92862 0.91321 0.92055 0.94671 0.91174 0.90558 0.93584 0.94628 0.90583 0.92994 0.97021 0.89212 0.96633 0.92179 0.94085 0.94993 0.91090 0.93739 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.17 6.05 -26.73 -0.16 -1.34 16 3 C 0.04 0.49 4.83 -3.82 -0.02 0.47 16 4 N -0.51 -6.81 5.34 -230.17 -1.23 -8.04 16 5 C 0.04 0.53 5.46 -2.26 -0.01 0.52 16 6 C -0.09 -1.46 4.12 -88.08 -0.36 -1.83 16 7 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 8 C 0.05 1.05 5.26 -2.26 -0.01 1.04 16 9 N -0.50 -10.55 4.53 -223.60 -1.01 -11.56 16 10 C 0.21 5.15 1.52 -68.87 -0.10 5.04 16 11 H 0.00 -0.10 7.98 -51.92 -0.41 -0.51 16 12 C -0.50 -13.29 6.74 -34.44 -0.23 -13.52 16 13 H 0.06 1.62 7.02 -52.49 -0.37 1.26 16 14 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 15 N -0.89 -25.20 11.33 55.43 0.63 -24.57 16 16 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C -0.11 -2.60 5.30 -26.73 -0.14 -2.74 16 21 C -0.12 -2.69 9.52 37.16 0.35 -2.33 16 22 C 0.04 0.68 5.03 -2.25 -0.01 0.67 16 23 C -0.09 -1.37 4.12 -88.08 -0.36 -1.73 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 25 C 0.04 0.51 5.99 -2.26 -0.01 0.50 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.64 7.46 -51.93 -0.39 0.25 16 31 H 0.04 0.43 7.77 -51.93 -0.40 0.03 16 32 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.08 0.98 7.84 -51.93 -0.41 0.58 16 34 H 0.05 0.70 6.76 -51.93 -0.35 0.35 16 35 H 0.04 0.73 6.97 -51.93 -0.36 0.37 16 36 H 0.08 1.52 7.46 -51.93 -0.39 1.13 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.01 0.25 6.98 -51.93 -0.36 -0.11 16 39 H 0.09 2.40 6.09 -51.93 -0.32 2.09 16 40 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 1.46 7.06 -51.93 -0.37 1.09 16 42 H 0.04 0.87 7.74 -51.93 -0.40 0.47 16 43 H 0.03 0.61 6.93 -51.93 -0.36 0.25 16 44 H 0.07 1.26 7.65 -51.93 -0.40 0.87 16 45 H 0.04 0.64 7.01 -51.93 -0.36 0.28 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 341.48 15.07 5.15 5.15 Total: -1.00 -27.41 341.48 -10.88 -38.29 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.59 Total: -0.86 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -0.81 Total: -14.60 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -1.61 Total: -44.17 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.41 -10.88 -38.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.637 kcal (2) G-P(sol) polarization free energy of solvation -27.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds