Wall clock time and date at job start Mon Mar 30 2020 01:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47413 * 2 1 4 4 N 1.46907 * 109.46986 * 180.02562 * 3 2 1 5 5 C 1.48515 * 110.99704 * 285.39548 * 4 3 2 6 6 C 1.54286 * 104.71366 * 200.72660 * 5 4 3 7 7 H 1.09005 * 112.83972 * 261.18068 * 6 5 4 8 8 C 1.54283 * 108.81680 * 135.72955 * 6 5 4 9 9 N 1.48520 * 104.71576 * 224.27065 * 8 6 5 10 10 C 1.46893 * 111.00127 * 159.27549 * 9 8 6 11 11 H 1.09008 * 109.47417 * 301.16298 * 10 9 8 12 12 C 1.50698 * 109.47090 * 61.16462 * 10 9 8 13 13 H 1.07998 * 120.00353 * 359.97438 * 12 10 9 14 14 C 1.37879 * 120.00018 * 180.02562 * 12 10 9 15 15 N 1.31516 * 119.99999 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 120.00193 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47351 * 59.99580 * 16 14 12 18 18 H 1.48496 * 109.47351 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46761 * 300.00099 * 16 14 12 20 20 C 1.53000 * 109.47518 * 181.16747 * 10 9 8 21 21 C 1.53007 * 109.46839 * 299.17116 * 20 10 9 22 22 C 1.48520 * 104.20301 * 39.72989 * 9 8 6 23 23 C 1.54294 * 104.71450 * 320.27054 * 22 9 8 24 24 H 1.08991 * 112.37936 * 261.44545 * 23 22 9 25 25 C 1.48522 * 110.99710 * 170.00170 * 4 3 2 26 26 H 1.09005 * 109.46501 * 59.99791 * 1 2 3 27 27 H 1.08997 * 109.47436 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46788 * 300.00331 * 1 2 3 29 29 H 1.09003 * 109.47262 * 239.99697 * 2 1 3 30 30 H 1.08999 * 109.47137 * 119.99980 * 2 1 3 31 31 H 1.08999 * 109.47414 * 60.00052 * 3 2 1 32 32 H 1.08996 * 109.47177 * 299.99607 * 3 2 1 33 33 H 1.09004 * 110.38511 * 81.91864 * 5 4 3 34 34 H 1.08997 * 110.39029 * 319.53630 * 5 4 3 35 35 H 1.08999 * 110.38942 * 343.08373 * 8 6 5 36 36 H 1.09003 * 110.39000 * 105.35412 * 8 6 5 37 37 H 0.97000 * 119.99973 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.47130 * 59.16372 * 20 10 9 39 39 H 1.08991 * 109.47257 * 179.17177 * 20 10 9 40 40 H 1.08996 * 109.47031 * 183.68308 * 21 20 10 41 41 H 1.09001 * 109.46675 * 303.68662 * 21 20 10 42 42 H 1.09002 * 109.47214 * 63.68223 * 21 20 10 43 43 H 1.08997 * 110.39114 * 79.08035 * 22 9 8 44 44 H 1.08998 * 110.39173 * 201.46425 * 22 9 8 45 45 H 1.08993 * 110.39009 * 40.46376 * 25 4 3 46 46 H 1.09001 * 110.38354 * 278.08009 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0418 1.0740 1.3359 6 6 5.4853 1.6187 1.3461 7 1 6.2282 0.8526 1.1238 8 6 5.7452 2.3142 2.6986 9 7 6.4417 3.5775 2.3455 10 6 6.3260 4.5629 3.4287 11 1 5.2731 4.7672 3.6233 12 6 6.9704 4.0159 4.6763 13 1 7.4205 3.0342 4.6657 14 6 6.9845 4.7683 5.8316 15 7 6.4352 5.9631 5.8450 16 14 7.7840 4.0906 7.3779 17 1 9.2185 3.8133 7.1128 18 1 7.6659 5.0861 8.4734 19 1 7.1024 2.8329 7.7770 20 6 7.0291 5.8581 3.0174 21 6 8.5114 5.5754 2.7643 22 6 5.7446 4.0481 1.1213 23 6 5.4850 2.7671 0.3013 24 1 6.2276 2.6184 -0.4824 25 6 4.0413 2.8079 -0.2414 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 4.0438 -0.0091 1.4585 34 1 3.4526 1.5451 2.1226 35 1 4.8028 2.5282 3.2028 36 1 6.3800 1.6922 3.3297 37 1 6.4448 6.4923 6.6579 38 1 6.5726 6.2458 2.1067 39 1 6.9306 6.5941 3.8151 40 1 9.0253 6.5089 2.5351 41 1 8.9527 5.1266 3.6542 42 1 8.6121 4.8892 1.9234 43 1 4.8022 4.5295 1.3822 44 1 6.3806 4.7343 0.5622 45 1 3.4520 3.5464 0.3020 46 1 4.0429 3.0322 -1.3081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:37 Heat of formation + Delta-G solvation = -16.185151 kcal Electronic energy + Delta-G solvation = -21530.075990 eV Core-core repulsion = 18646.222226 eV Total energy + Delta-G solvation = -2883.853764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21923 -38.41663 -36.13973 -34.34891 -33.10862 -31.53266 -30.96763 -28.38230 -26.88485 -26.45002 -25.01825 -23.09990 -22.50134 -21.71598 -20.86890 -20.06973 -18.12781 -17.60672 -16.93377 -16.35729 -16.16477 -15.85686 -15.41990 -15.33257 -14.80228 -14.54484 -14.09639 -13.94814 -13.69978 -13.32923 -13.20870 -13.14061 -12.85944 -12.77915 -12.67524 -12.56726 -12.40417 -12.27830 -11.91024 -11.86318 -11.68844 -11.61552 -11.55062 -11.47328 -11.42592 -11.18706 -10.79980 -10.49488 -9.56312 -9.02859 -8.09758 -6.19890 1.41063 1.42289 1.49603 2.41904 2.95276 3.18541 3.34296 3.54134 3.81366 3.92334 4.05058 4.14878 4.17761 4.39881 4.44229 4.45530 4.50013 4.58202 4.59734 4.71029 4.71728 4.75321 4.79694 4.82862 4.84815 4.87208 4.92670 4.95508 5.17782 5.19163 5.23560 5.25841 5.28268 5.34828 5.40922 5.42108 5.49812 5.70281 5.73612 5.80658 5.84568 6.06121 6.23855 6.35170 6.64179 6.91813 7.47834 8.95860 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.024317 B = 0.004757 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.161900 B = 5885.076365 C = 6464.052716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.042 3.958 4 N -0.510 5.510 5 C 0.044 3.956 6 C -0.086 4.086 7 H 0.102 0.898 8 C 0.056 3.944 9 N -0.505 5.505 10 C 0.216 3.784 11 H -0.047 1.047 12 C -0.506 4.506 13 H 0.054 0.946 14 C 0.015 3.985 15 N -0.920 5.920 16 Si 0.952 3.048 17 H -0.271 1.271 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.104 4.104 21 C -0.107 4.107 22 C 0.038 3.962 23 C -0.082 4.082 24 H 0.106 0.894 25 C 0.041 3.959 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.023 0.977 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.028 0.972 35 H 0.013 0.987 36 H 0.064 0.936 37 H 0.260 0.740 38 H 0.025 0.975 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.051 0.949 43 H 0.017 0.983 44 H 0.077 0.923 45 H 0.031 0.969 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.129 -9.105 -12.645 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.087 4.087 4 N -0.234 5.234 5 C -0.084 4.084 6 C -0.105 4.105 7 H 0.120 0.880 8 C -0.073 4.073 9 N -0.229 5.229 10 C 0.108 3.892 11 H -0.030 1.030 12 C -0.544 4.544 13 H 0.072 0.928 14 C -0.184 4.184 15 N -0.560 5.560 16 Si 0.778 3.222 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.143 4.143 21 C -0.164 4.164 22 C -0.090 4.090 23 C -0.101 4.101 24 H 0.125 0.875 25 C -0.087 4.087 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.046 0.954 35 H 0.031 0.969 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.035 0.965 44 H 0.095 0.905 45 H 0.049 0.951 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.442 -9.393 -13.011 17.292 hybrid contribution -0.940 0.970 2.219 2.597 sum -7.382 -8.423 -10.792 15.554 Atomic orbital electron populations 1.21727 0.94665 1.02374 1.01885 1.21420 0.96087 0.95144 1.02407 1.22392 0.87171 0.98393 1.00714 1.65458 1.08472 1.22654 1.26783 1.23202 0.93914 1.01430 0.89873 1.22661 0.96905 0.97427 0.93547 0.87951 1.22939 0.95722 0.92411 0.96227 1.65381 1.49097 1.04065 1.04362 1.19201 0.91660 0.89587 0.88743 1.03001 1.21200 1.36292 1.02083 0.94844 0.92785 1.25620 0.96098 0.95136 1.01502 1.70011 1.46007 1.11421 1.28542 0.85704 0.79310 0.77994 0.79218 1.19575 1.21113 1.19908 1.21379 0.96297 0.98677 0.97901 1.21312 0.95626 0.98932 1.00569 1.23198 0.96072 0.97076 0.92663 1.22616 0.97038 0.93259 0.97199 0.87530 1.23220 0.93849 0.89728 1.01864 0.92031 0.91598 0.93296 0.90967 0.92701 0.95867 0.89986 0.88988 0.95366 0.96864 0.91727 0.93101 0.95604 0.92186 0.94477 0.94526 0.92955 0.96472 0.90469 0.95057 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.50 16 2 C -0.11 -2.03 6.05 30.59 0.19 -1.85 16 3 C 0.04 0.89 4.83 86.30 0.42 1.30 16 4 N -0.51 -12.50 5.34 -882.12 -4.71 -17.21 16 5 C 0.04 1.18 5.46 86.43 0.47 1.65 16 6 C -0.09 -2.56 4.12 -9.15 -0.04 -2.60 16 7 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 8 C 0.06 2.17 5.26 86.42 0.45 2.63 16 9 N -0.51 -21.55 4.53 -861.33 -3.90 -25.45 16 10 C 0.22 11.04 1.52 44.17 0.07 11.10 16 11 H -0.05 -2.78 7.98 -2.38 -0.02 -2.80 16 12 C -0.51 -27.74 6.74 25.60 0.17 -27.57 16 13 H 0.05 2.97 7.02 -2.91 -0.02 2.95 16 14 C 0.02 0.83 5.30 84.65 0.45 1.28 16 15 N -0.92 -53.31 11.33 21.45 0.24 -53.07 16 16 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 18 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 20 C -0.10 -5.08 5.30 30.60 0.16 -4.91 16 21 C -0.11 -4.72 9.52 71.98 0.69 -4.03 16 22 C 0.04 1.37 5.03 86.43 0.43 1.81 16 23 C -0.08 -2.32 4.12 -9.15 -0.04 -2.36 16 24 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 25 C 0.04 1.05 5.99 86.42 0.52 1.56 16 26 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.06 7.46 -2.39 -0.02 1.04 16 31 H 0.02 0.55 7.77 -2.39 -0.02 0.54 16 32 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 33 H 0.09 2.20 7.84 -2.38 -0.02 2.18 16 34 H 0.03 0.86 6.76 -2.39 -0.02 0.85 16 35 H 0.01 0.57 6.97 -2.39 -0.02 0.55 16 36 H 0.06 2.63 7.46 -2.39 -0.02 2.61 16 37 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 38 H 0.03 1.15 6.98 -2.39 -0.02 1.13 16 39 H 0.06 3.30 6.09 -2.39 -0.01 3.29 16 40 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.04 1.76 7.06 -2.39 -0.02 1.74 16 42 H 0.05 2.15 7.74 -2.39 -0.02 2.14 16 43 H 0.02 0.66 6.93 -2.39 -0.02 0.65 16 44 H 0.08 2.65 7.65 -2.39 -0.02 2.63 16 45 H 0.03 0.88 7.01 -2.39 -0.02 0.86 16 46 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -59.68 341.48 -0.77 -60.45 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.91 Total: 12.76 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 4.66 Total: -23.47 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -8.36 Total: -95.72 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -59.68 -0.77 -60.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.266 kcal (2) G-P(sol) polarization free energy of solvation -59.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds