Wall clock time and date at job start Mon Mar 30 2020 01:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46524 * 2 1 4 4 N 1.46901 * 109.46669 * 180.02562 * 3 2 1 5 5 C 1.48510 * 110.99826 * 285.39669 * 4 3 2 6 6 C 1.55660 * 104.73659 * 200.44747 * 5 4 3 7 7 H 1.09007 * 112.85613 * 261.98073 * 6 5 4 8 8 C 1.54286 * 108.92194 * 135.84294 * 6 5 4 9 9 N 1.48520 * 104.71386 * 224.97160 * 8 6 5 10 10 C 1.46900 * 110.99910 * 159.27516 * 9 8 6 11 11 H 1.09000 * 109.46906 * 301.39769 * 10 9 8 12 12 C 1.50700 * 109.46798 * 181.40247 * 10 9 8 13 13 H 1.07995 * 119.99987 * 359.97438 * 12 10 9 14 14 C 1.37882 * 119.99632 * 180.02562 * 12 10 9 15 15 N 1.31507 * 120.00222 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99834 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46802 * 59.99677 * 16 14 12 18 18 H 1.48494 * 109.46946 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47010 * 300.00157 * 16 14 12 20 20 C 1.52990 * 109.47234 * 61.39999 * 10 9 8 21 21 C 1.53001 * 109.47524 * 60.55280 * 20 10 9 22 22 C 1.48519 * 104.20221 * 39.72695 * 9 8 6 23 23 C 1.54287 * 104.71767 * 320.26997 * 22 9 8 24 24 H 1.08999 * 112.37905 * 261.44757 * 23 22 9 25 25 C 1.48515 * 110.99910 * 169.99804 * 4 3 2 26 26 H 1.09008 * 109.46730 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46898 * 299.99243 * 1 2 3 28 28 H 1.08996 * 109.47887 * 60.00087 * 1 2 3 29 29 H 1.09002 * 109.46898 * 240.00757 * 2 1 3 30 30 H 1.08992 * 109.47448 * 119.99681 * 2 1 3 31 31 H 1.08995 * 109.47429 * 60.00354 * 3 2 1 32 32 H 1.09005 * 109.47141 * 299.99687 * 3 2 1 33 33 H 1.08996 * 110.39053 * 319.53093 * 5 4 3 34 34 H 1.08995 * 110.39161 * 81.80481 * 5 4 3 35 35 H 1.08992 * 110.39007 * 106.15731 * 8 6 5 36 36 H 1.09001 * 110.38309 * 343.77563 * 8 6 5 37 37 H 0.96998 * 120.00227 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.47350 * 180.55167 * 20 10 9 39 39 H 1.09007 * 109.47656 * 300.55171 * 20 10 9 40 40 H 1.08989 * 109.47426 * 185.40822 * 21 20 10 41 41 H 1.09003 * 109.46727 * 305.41219 * 21 20 10 42 42 H 1.09005 * 109.46997 * 65.40559 * 21 20 10 43 43 H 1.08994 * 110.39235 * 79.08521 * 22 9 8 44 44 H 1.09003 * 110.38169 * 201.46084 * 22 9 8 45 45 H 1.09002 * 110.38932 * 40.46741 * 25 4 3 46 46 H 1.09003 * 110.39034 * 278.08842 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0416 1.0743 1.3358 6 6 5.5004 1.6175 1.3440 7 1 6.2389 0.8510 1.1087 8 6 5.7681 2.3120 2.6954 9 7 6.4544 3.5799 2.3385 10 6 6.3426 4.5628 3.4245 11 1 5.2903 4.7576 3.6313 12 6 7.0195 5.8448 3.0132 13 1 7.4863 5.9216 2.0424 14 6 7.0436 6.9194 3.8768 15 7 6.4756 6.8257 5.0591 16 14 7.8832 8.5085 3.3673 17 1 7.2297 9.0441 2.1461 18 1 7.7701 9.5021 4.4650 19 1 9.3167 8.2425 3.0853 20 6 7.0161 4.0114 4.6827 21 6 8.4963 3.7508 4.3965 22 6 5.7442 4.0485 1.1212 23 6 5.4846 2.7676 0.3013 24 1 6.2213 2.6244 -0.4892 25 6 4.0410 2.8081 -0.2415 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3635 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5137 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.4524 1.5454 2.1225 34 1 4.0419 -0.0086 1.4593 35 1 6.4133 1.6934 3.3191 36 1 4.8289 2.5199 3.2080 37 1 6.4922 7.5818 5.6665 38 1 6.9246 4.7366 5.4913 39 1 6.5329 3.0789 4.9746 40 1 8.9542 3.2693 5.2604 41 1 8.5892 3.1007 3.5265 42 1 9.0001 4.6970 4.1984 43 1 4.8015 4.5243 1.3910 44 1 6.3716 4.7394 0.5579 45 1 3.4516 3.5467 0.3020 46 1 4.0424 3.0325 -1.3081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255179775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:44 Heat of formation + Delta-G solvation = 0.708030 kcal Electronic energy + Delta-G solvation = -21515.381943 eV Core-core repulsion = 18632.260723 eV Total energy + Delta-G solvation = -2883.121221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.85226 -36.97654 -34.70547 -32.94131 -31.28642 -30.21790 -29.48144 -26.67197 -25.64148 -24.98894 -23.31024 -21.79353 -21.15719 -20.72341 -19.17585 -18.55350 -16.39870 -16.02279 -15.44531 -15.28342 -14.69166 -14.42085 -14.11676 -13.67451 -13.34447 -13.21260 -12.88131 -12.33220 -12.23400 -11.99862 -11.87241 -11.77628 -11.58110 -11.41970 -11.14315 -10.95158 -10.89477 -10.71039 -10.59874 -10.53431 -10.37926 -10.26884 -10.17395 -9.86482 -9.66459 -9.34261 -8.82249 -8.46310 -8.38046 -7.27106 -5.99582 -4.03043 3.32164 3.36766 3.39724 4.01892 4.41401 4.68506 4.69176 4.91161 5.00239 5.14612 5.23274 5.30680 5.37726 5.41112 5.45214 5.57829 5.60260 5.66995 5.73044 5.79969 5.85411 5.88200 6.00733 6.07330 6.10293 6.17501 6.23408 6.38966 6.45611 6.59169 6.63436 6.66272 6.72752 6.80982 6.91345 7.09971 7.13824 7.25713 7.39668 7.61430 7.72264 7.84573 8.10703 8.34097 8.56263 9.01918 9.60887 11.07023 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.027572 B = 0.004518 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.271776 B = 6195.662162 C = 6493.723016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.043 3.957 4 N -0.513 5.513 5 C 0.037 3.963 6 C -0.089 4.089 7 H 0.088 0.912 8 C 0.038 3.962 9 N -0.499 5.499 10 C 0.208 3.792 11 H -0.003 1.003 12 C -0.496 4.496 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.276 1.276 20 C -0.109 4.109 21 C -0.120 4.120 22 C 0.054 3.946 23 C -0.094 4.094 24 H 0.087 0.913 25 C 0.038 3.962 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.260 0.740 38 H 0.090 0.910 39 H 0.011 0.989 40 H 0.014 0.986 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.035 0.965 44 H 0.076 0.924 45 H 0.046 0.954 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.444 -11.155 -8.010 15.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.086 4.086 4 N -0.237 5.237 5 C -0.091 4.091 6 C -0.109 4.109 7 H 0.107 0.893 8 C -0.090 4.090 9 N -0.224 5.224 10 C 0.101 3.899 11 H 0.014 0.986 12 C -0.534 4.534 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.147 4.147 21 C -0.178 4.178 22 C -0.074 4.074 23 C -0.114 4.114 24 H 0.105 0.895 25 C -0.090 4.090 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.108 0.892 39 H 0.030 0.970 40 H 0.033 0.967 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.754 -11.467 -8.330 15.700 hybrid contribution -0.814 1.699 0.699 2.010 sum -7.568 -9.768 -7.631 14.523 Atomic orbital electron populations 1.21750 0.95874 1.01583 1.01730 1.21456 0.95062 0.96446 1.02549 1.22310 0.88339 0.97165 1.00782 1.65375 1.07313 1.23374 1.27620 1.23525 0.95126 1.00608 0.89825 1.22875 0.95283 0.97139 0.95571 0.89335 1.23120 0.97073 0.93917 0.94926 1.65465 1.48036 1.03439 1.05425 1.19429 0.94522 0.89144 0.86785 0.98591 1.20992 1.35182 0.95650 1.01608 0.92175 1.24898 0.95636 0.98611 0.94955 1.69866 1.44658 1.31113 1.07657 0.86638 0.80191 0.83112 0.77946 1.20416 1.21430 1.20206 1.21519 0.94827 0.97671 1.00731 1.21455 0.97339 1.00839 0.98139 1.22975 0.97198 0.94690 0.92586 1.22690 0.95419 0.95761 0.97508 0.89482 1.23257 0.95258 0.89552 1.00958 0.92658 0.92883 0.92763 0.91303 0.92123 0.94691 0.91102 0.93733 0.90661 0.91051 0.94984 0.93000 0.89185 0.97001 0.96681 0.93482 0.92678 0.94643 0.90572 0.93618 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.15 6.05 -26.73 -0.16 -1.32 16 3 C 0.04 0.49 4.83 -3.82 -0.02 0.47 16 4 N -0.51 -6.80 5.34 -229.27 -1.22 -8.02 16 5 C 0.04 0.51 5.49 -1.52 -0.01 0.50 16 6 C -0.09 -1.35 4.20 -87.34 -0.37 -1.72 16 7 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 8 C 0.04 0.69 4.96 -2.25 -0.01 0.68 16 9 N -0.50 -10.54 4.35 -223.61 -0.97 -11.51 16 10 C 0.21 5.15 1.52 -68.87 -0.10 5.05 16 11 H 0.00 -0.10 7.98 -51.93 -0.41 -0.51 16 12 C -0.50 -13.29 6.95 -34.44 -0.24 -13.53 16 13 H 0.06 1.63 7.15 -52.49 -0.38 1.25 16 14 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 15 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.11 -2.62 5.25 -26.74 -0.14 -2.76 16 21 C -0.12 -2.69 9.47 37.16 0.35 -2.33 16 22 C 0.05 1.04 5.31 -2.25 -0.01 1.03 16 23 C -0.09 -1.46 4.09 -88.08 -0.36 -1.82 16 24 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 25 C 0.04 0.53 5.99 -2.26 -0.01 0.51 16 26 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.62 7.46 -51.93 -0.39 0.23 16 31 H 0.03 0.43 7.77 -51.93 -0.40 0.02 16 32 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.04 0.65 6.81 -51.93 -0.35 0.29 16 34 H 0.07 0.93 7.83 -51.93 -0.41 0.52 16 35 H 0.07 1.27 7.65 -51.93 -0.40 0.87 16 36 H 0.03 0.61 6.99 -51.93 -0.36 0.25 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.09 2.41 6.08 -51.93 -0.32 2.09 16 39 H 0.01 0.25 6.94 -51.92 -0.36 -0.11 16 40 H 0.01 0.29 8.14 -51.94 -0.42 -0.13 16 41 H 0.05 1.01 7.46 -51.93 -0.39 0.63 16 42 H 0.05 1.33 7.40 -51.93 -0.38 0.94 16 43 H 0.04 0.72 6.94 -51.93 -0.36 0.36 16 44 H 0.08 1.51 7.56 -51.93 -0.39 1.12 16 45 H 0.05 0.68 7.01 -51.93 -0.36 0.32 16 46 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -27.46 341.76 -10.85 -38.31 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.60 Total: -0.95 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -0.81 Total: -14.59 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -1.57 Total: -44.14 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.46 -10.85 -38.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.016 kcal (2) G-P(sol) polarization free energy of solvation -27.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds