Wall clock time and date at job start Mon Mar 30 2020 01:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46524 * 2 1 4 4 N 1.46901 * 109.46669 * 180.02562 * 3 2 1 5 5 C 1.48510 * 110.99826 * 285.39669 * 4 3 2 6 6 C 1.55660 * 104.73659 * 200.44747 * 5 4 3 7 7 H 1.09007 * 112.85613 * 261.98073 * 6 5 4 8 8 C 1.54286 * 108.92194 * 135.84294 * 6 5 4 9 9 N 1.48520 * 104.71386 * 224.97160 * 8 6 5 10 10 C 1.46900 * 110.99910 * 159.27516 * 9 8 6 11 11 H 1.09000 * 109.46906 * 301.39769 * 10 9 8 12 12 C 1.50700 * 109.46798 * 181.40247 * 10 9 8 13 13 H 1.07995 * 119.99987 * 359.97438 * 12 10 9 14 14 C 1.37882 * 119.99632 * 180.02562 * 12 10 9 15 15 N 1.31507 * 120.00222 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99834 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46802 * 59.99677 * 16 14 12 18 18 H 1.48494 * 109.46946 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47010 * 300.00157 * 16 14 12 20 20 C 1.52990 * 109.47234 * 61.39999 * 10 9 8 21 21 C 1.53001 * 109.47524 * 60.55280 * 20 10 9 22 22 C 1.48519 * 104.20221 * 39.72695 * 9 8 6 23 23 C 1.54287 * 104.71767 * 320.26997 * 22 9 8 24 24 H 1.08999 * 112.37905 * 261.44757 * 23 22 9 25 25 C 1.48515 * 110.99910 * 169.99804 * 4 3 2 26 26 H 1.09008 * 109.46730 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46898 * 299.99243 * 1 2 3 28 28 H 1.08996 * 109.47887 * 60.00087 * 1 2 3 29 29 H 1.09002 * 109.46898 * 240.00757 * 2 1 3 30 30 H 1.08992 * 109.47448 * 119.99681 * 2 1 3 31 31 H 1.08995 * 109.47429 * 60.00354 * 3 2 1 32 32 H 1.09005 * 109.47141 * 299.99687 * 3 2 1 33 33 H 1.08996 * 110.39053 * 319.53093 * 5 4 3 34 34 H 1.08995 * 110.39161 * 81.80481 * 5 4 3 35 35 H 1.08992 * 110.39007 * 106.15731 * 8 6 5 36 36 H 1.09001 * 110.38309 * 343.77563 * 8 6 5 37 37 H 0.96998 * 120.00227 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.47350 * 180.55167 * 20 10 9 39 39 H 1.09007 * 109.47656 * 300.55171 * 20 10 9 40 40 H 1.08989 * 109.47426 * 185.40822 * 21 20 10 41 41 H 1.09003 * 109.46727 * 305.41219 * 21 20 10 42 42 H 1.09005 * 109.46997 * 65.40559 * 21 20 10 43 43 H 1.08994 * 110.39235 * 79.08521 * 22 9 8 44 44 H 1.09003 * 110.38169 * 201.46084 * 22 9 8 45 45 H 1.09002 * 110.38932 * 40.46741 * 25 4 3 46 46 H 1.09003 * 110.39034 * 278.08842 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0416 1.0743 1.3358 6 6 5.5004 1.6175 1.3440 7 1 6.2389 0.8510 1.1087 8 6 5.7681 2.3120 2.6954 9 7 6.4544 3.5799 2.3385 10 6 6.3426 4.5628 3.4245 11 1 5.2903 4.7576 3.6313 12 6 7.0195 5.8448 3.0132 13 1 7.4863 5.9216 2.0424 14 6 7.0436 6.9194 3.8768 15 7 6.4756 6.8257 5.0591 16 14 7.8832 8.5085 3.3673 17 1 7.2297 9.0441 2.1461 18 1 7.7701 9.5021 4.4650 19 1 9.3167 8.2425 3.0853 20 6 7.0161 4.0114 4.6827 21 6 8.4963 3.7508 4.3965 22 6 5.7442 4.0485 1.1212 23 6 5.4846 2.7676 0.3013 24 1 6.2213 2.6244 -0.4892 25 6 4.0410 2.8081 -0.2415 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3635 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5137 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.4524 1.5454 2.1225 34 1 4.0419 -0.0086 1.4593 35 1 6.4133 1.6934 3.3191 36 1 4.8289 2.5199 3.2080 37 1 6.4922 7.5818 5.6665 38 1 6.9246 4.7366 5.4913 39 1 6.5329 3.0789 4.9746 40 1 8.9542 3.2693 5.2604 41 1 8.5892 3.1007 3.5265 42 1 9.0001 4.6970 4.1984 43 1 4.8015 4.5243 1.3910 44 1 6.3716 4.7394 0.5579 45 1 3.4516 3.5467 0.3020 46 1 4.0424 3.0325 -1.3081 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255179775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:43 Heat of formation + Delta-G solvation = -15.720098 kcal Electronic energy + Delta-G solvation = -21516.094320 eV Core-core repulsion = 18632.260723 eV Total energy + Delta-G solvation = -2883.833598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17307 -38.41909 -36.13347 -34.34928 -33.08771 -31.55497 -30.88561 -28.40122 -26.92582 -26.37264 -25.07176 -23.00070 -22.53077 -21.85224 -20.73340 -20.09550 -18.13659 -17.60439 -16.93187 -16.37794 -16.18185 -15.67340 -15.58735 -15.33137 -14.73555 -14.52361 -14.23312 -13.97880 -13.50633 -13.35548 -13.20720 -13.16892 -12.87883 -12.79140 -12.62469 -12.58432 -12.41035 -12.28948 -11.87477 -11.84280 -11.70332 -11.65083 -11.54113 -11.49792 -11.39857 -11.18956 -10.81853 -10.48706 -9.56241 -9.02912 -8.09615 -6.19828 1.41027 1.42299 1.49625 2.41969 2.95291 3.18641 3.32920 3.54587 3.81707 3.91303 4.05418 4.15050 4.18184 4.38325 4.43960 4.44932 4.50119 4.56633 4.60887 4.68971 4.72260 4.76196 4.79512 4.81434 4.86406 4.87913 4.90383 4.96610 5.17461 5.20134 5.21989 5.25353 5.29119 5.35018 5.40572 5.41841 5.49559 5.69848 5.73635 5.80581 5.84256 6.06081 6.24635 6.35056 6.64099 6.91870 7.47985 8.95949 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.027572 B = 0.004518 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.271776 B = 6195.662162 C = 6493.723016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.041 3.959 4 N -0.510 5.510 5 C 0.043 3.957 6 C -0.081 4.081 7 H 0.107 0.893 8 C 0.039 3.961 9 N -0.505 5.505 10 C 0.216 3.784 11 H -0.047 1.047 12 C -0.505 4.505 13 H 0.054 0.946 14 C 0.014 3.986 15 N -0.920 5.920 16 Si 0.952 3.048 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.105 4.105 21 C -0.107 4.107 22 C 0.055 3.945 23 C -0.086 4.086 24 H 0.102 0.898 25 C 0.042 3.958 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.024 0.976 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.017 0.983 37 H 0.260 0.740 38 H 0.060 0.940 39 H 0.026 0.974 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.031 0.969 43 H 0.014 0.986 44 H 0.064 0.936 45 H 0.029 0.971 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.231 -12.628 -9.476 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.087 4.087 4 N -0.234 5.234 5 C -0.085 4.085 6 C -0.101 4.101 7 H 0.125 0.875 8 C -0.089 4.089 9 N -0.229 5.229 10 C 0.108 3.892 11 H -0.030 1.030 12 C -0.544 4.544 13 H 0.072 0.928 14 C -0.184 4.184 15 N -0.560 5.560 16 Si 0.778 3.222 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.144 4.144 21 C -0.164 4.164 22 C -0.074 4.074 23 C -0.105 4.105 24 H 0.120 0.880 25 C -0.086 4.086 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.032 0.968 44 H 0.083 0.917 45 H 0.048 0.952 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.545 -12.954 -9.811 17.518 hybrid contribution -0.923 2.142 1.162 2.606 sum -7.468 -10.812 -8.648 15.731 Atomic orbital electron populations 1.21731 0.94707 1.02395 1.01852 1.21416 0.96043 0.94996 1.02502 1.22396 0.87168 0.98484 1.00662 1.65438 1.08455 1.22426 1.27052 1.23472 0.93754 1.01560 0.89739 1.22868 0.96856 0.97110 0.93255 0.87472 1.23157 0.96158 0.92727 0.96875 1.65386 1.49007 1.03677 1.04844 1.19189 0.91721 0.89842 0.88428 1.02986 1.21198 1.35051 0.96840 1.01284 0.92813 1.25623 0.96236 1.01598 0.94950 1.70005 1.45665 1.31839 1.08511 0.85700 0.79340 0.79484 0.77683 1.19870 1.21120 1.19607 1.21396 0.96297 0.97339 0.99320 1.21305 0.95684 0.99933 0.99513 1.22953 0.95612 0.96476 0.92325 1.22642 0.96879 0.93582 0.97413 0.87991 1.23200 0.93945 0.89819 1.01672 0.91518 0.93238 0.92203 0.91022 0.92412 0.95786 0.90290 0.95168 0.88668 0.90456 0.96476 0.93104 0.92169 0.95572 0.94229 0.92687 0.94993 0.96816 0.91706 0.95240 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.11 -1.96 6.05 30.60 0.19 -1.77 16 3 C 0.04 0.88 4.83 86.30 0.42 1.29 16 4 N -0.51 -12.48 5.34 -879.27 -4.69 -17.17 16 5 C 0.04 1.09 5.49 86.91 0.48 1.57 16 6 C -0.08 -2.32 4.20 -8.67 -0.04 -2.35 16 7 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 8 C 0.04 1.40 4.96 86.43 0.43 1.83 16 9 N -0.51 -21.53 4.35 -861.36 -3.75 -25.28 16 10 C 0.22 11.05 1.52 44.17 0.07 11.11 16 11 H -0.05 -2.78 7.98 -2.39 -0.02 -2.79 16 12 C -0.51 -27.76 6.95 25.60 0.18 -27.58 16 13 H 0.05 2.96 7.15 -2.91 -0.02 2.94 16 14 C 0.01 0.80 5.30 84.66 0.45 1.25 16 15 N -0.92 -53.39 11.32 21.45 0.24 -53.15 16 16 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 C -0.11 -5.12 5.25 30.59 0.16 -4.96 16 21 C -0.11 -4.71 9.47 71.98 0.68 -4.03 16 22 C 0.06 2.14 5.31 86.43 0.46 2.60 16 23 C -0.09 -2.54 4.09 -9.15 -0.04 -2.58 16 24 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 25 C 0.04 1.11 5.99 86.43 0.52 1.63 16 26 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.05 7.46 -2.39 -0.02 1.03 16 31 H 0.02 0.57 7.77 -2.39 -0.02 0.55 16 32 H 0.08 1.56 8.08 -2.38 -0.02 1.54 16 33 H 0.03 0.86 6.81 -2.39 -0.02 0.85 16 34 H 0.10 2.08 7.83 -2.39 -0.02 2.06 16 35 H 0.08 2.66 7.65 -2.39 -0.02 2.64 16 36 H 0.02 0.66 6.99 -2.39 -0.02 0.64 16 37 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.06 3.31 6.08 -2.39 -0.01 3.30 16 39 H 0.03 1.16 6.94 -2.38 -0.02 1.14 16 40 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 2.30 7.46 -2.39 -0.02 2.28 16 42 H 0.03 1.52 7.40 -2.38 -0.02 1.50 16 43 H 0.01 0.58 6.94 -2.39 -0.02 0.57 16 44 H 0.06 2.63 7.56 -2.39 -0.02 2.61 16 45 H 0.03 0.88 7.01 -2.39 -0.02 0.86 16 46 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -59.75 341.76 -0.60 -60.36 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.91 Total: 12.65 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 4.66 Total: -23.44 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -8.20 Total: -95.60 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -59.75 -0.60 -60.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255179775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.635 kcal (2) G-P(sol) polarization free energy of solvation -59.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds