Wall clock time and date at job start Mon Mar 30 2020 00:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00384 * 2 1 4 4 C 1.53001 * 109.47272 * 89.99609 * 3 2 1 5 5 C 1.53003 * 109.47073 * 60.00381 * 4 3 2 6 6 C 1.52994 * 109.47096 * 59.99628 * 5 4 3 7 7 N 1.46898 * 109.47150 * 180.02562 * 6 5 4 8 8 C 1.46904 * 111.00098 * 303.95601 * 7 6 5 9 9 C 1.50702 * 109.47295 * 172.79913 * 8 7 6 10 10 H 1.08000 * 119.99546 * 354.95598 * 9 8 7 11 11 C 1.37870 * 120.00041 * 174.95266 * 9 8 7 12 12 N 1.31510 * 120.00319 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00168 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46972 * 59.99760 * 13 11 9 15 15 H 1.48496 * 109.47430 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47036 * 299.99903 * 13 11 9 17 17 C 1.46907 * 111.00230 * 180.02562 * 7 6 5 18 18 C 1.52991 * 109.47198 * 59.25702 * 17 7 6 19 19 C 1.47196 * 109.47281 * 181.24850 * 18 17 7 20 20 N 8.27675 * 172.63702 * 12.17196 * 2 1 3 21 21 C 1.52995 * 109.47621 * 300.00392 * 6 5 4 22 22 C 1.52996 * 109.47416 * 209.99962 * 3 2 1 23 23 H 1.08999 * 109.47129 * 300.00541 * 1 2 3 24 24 H 1.09005 * 109.46825 * 59.99827 * 1 2 3 25 25 H 1.09000 * 109.47612 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47045 * 329.99881 * 3 2 1 27 27 H 1.09004 * 109.47321 * 300.00458 * 4 3 2 28 28 H 1.08997 * 109.47433 * 180.02562 * 4 3 2 29 29 H 1.09006 * 109.46816 * 300.00378 * 5 4 3 30 30 H 1.08998 * 109.47455 * 180.02562 * 5 4 3 31 31 H 1.09006 * 109.46675 * 60.00664 * 6 5 4 32 32 H 1.08998 * 109.47252 * 292.80176 * 8 7 6 33 33 H 1.09001 * 109.46942 * 52.80495 * 8 7 6 34 34 H 0.96996 * 120.00449 * 180.02562 * 12 11 9 35 35 H 1.09000 * 109.46713 * 179.26096 * 17 7 6 36 36 H 1.09003 * 109.46828 * 299.25636 * 17 7 6 37 37 H 1.09001 * 109.47480 * 301.24950 * 18 17 7 38 38 H 1.09008 * 109.47370 * 61.24792 * 18 17 7 39 39 H 1.09004 * 109.47479 * 179.97438 * 21 6 5 40 40 H 1.08997 * 109.47142 * 299.99857 * 21 6 5 41 41 H 1.08997 * 109.47095 * 180.02562 * 22 3 2 42 42 H 1.08997 * 109.47589 * 59.99718 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.2176 1.7714 1.4425 5 6 3.1514 0.7973 2.1638 6 6 4.5000 0.7550 1.4426 7 7 5.3964 -0.1806 2.1348 8 6 5.5447 0.1823 3.5505 9 6 6.3228 -0.8921 4.2657 10 1 6.6017 -1.7952 3.7432 11 6 6.6785 -0.7220 5.5868 12 7 6.3394 0.3780 6.2228 13 14 7.6437 -2.0534 6.4731 14 1 8.9378 -2.2723 5.7783 15 1 7.8995 -1.6304 7.8733 16 1 6.8615 -3.3157 6.4718 17 6 6.7042 -0.2468 1.4690 18 6 7.3399 1.1447 1.4538 19 6 8.6368 1.0842 0.7603 20 7 9.6375 1.0369 0.2236 21 6 4.2927 0.2892 0.0001 22 6 3.3589 1.2632 -0.7212 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.3450 1.9994 -0.5139 27 1 1.2568 1.8015 1.9563 28 1 2.6606 2.7673 1.4425 29 1 2.7081 -0.1985 2.1638 30 1 3.2989 1.1290 3.1916 31 1 4.9434 1.7509 1.4426 32 1 6.0775 1.1300 3.6289 33 1 4.5591 0.2809 4.0055 34 1 6.5900 0.4978 7.1521 35 1 7.3525 -0.9366 2.0094 36 1 6.5734 -0.5977 0.4453 37 1 6.6813 1.8394 0.9326 38 1 7.4911 1.4863 2.4779 39 1 5.2535 0.2595 -0.5139 40 1 3.8493 -0.7066 0.0001 41 1 3.8025 2.2588 -0.7208 42 1 3.2112 0.9312 -1.7488 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255462801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:35 Heat of formation + Delta-G solvation = -26.580948 kcal Electronic energy + Delta-G solvation = -21140.845490 eV Core-core repulsion = 18120.707836 eV Total energy + Delta-G solvation = -3020.137654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.57112 -37.72884 -36.12054 -34.61557 -32.60606 -30.99823 -30.13994 -28.71579 -26.56698 -26.08693 -24.00146 -22.37413 -21.73421 -20.02763 -19.02941 -17.24015 -16.57467 -16.04972 -15.71148 -15.29812 -15.15887 -14.63547 -14.45543 -13.80592 -13.52348 -13.36634 -13.20127 -12.80457 -12.60750 -12.31983 -12.14078 -11.99673 -11.83803 -11.55436 -11.40352 -11.33776 -11.10102 -10.83514 -10.81519 -10.63932 -10.54357 -10.15204 -9.97104 -9.86957 -9.75857 -9.22253 -9.13274 -8.42788 -7.26289 -6.04935 -4.05641 3.12094 3.14783 3.33775 3.38071 3.41337 3.84567 4.35081 4.44126 4.78886 4.88215 4.97274 5.12312 5.28622 5.31065 5.33489 5.44738 5.48052 5.53446 5.63327 5.70898 5.73222 5.74275 5.76124 5.85639 5.91525 6.09485 6.11792 6.20870 6.40612 6.52509 6.59075 6.64564 6.78130 6.90856 7.27634 7.31314 7.32459 7.79300 7.90760 8.08037 8.15008 8.52749 9.02268 9.59090 11.05417 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.006067 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.733636 B = 4614.310242 C = 5892.799130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.374 6.374 3 C 0.090 3.910 4 C -0.139 4.139 5 C -0.108 4.108 6 C 0.083 3.917 7 N -0.523 5.523 8 C 0.183 3.817 9 C -0.509 4.509 10 H 0.063 0.937 11 C 0.058 3.942 12 N -0.898 5.898 13 Si 0.893 3.107 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.276 1.276 17 C 0.071 3.929 18 C -0.073 4.073 19 C 0.225 3.775 20 N -0.464 5.464 21 C -0.110 4.110 22 C -0.113 4.113 23 H 0.039 0.961 24 H 0.035 0.965 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.000 1.000 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.411 3.875 -11.390 15.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C 0.032 3.968 4 C -0.177 4.177 5 C -0.145 4.145 6 C -0.026 4.026 7 N -0.245 5.245 8 C 0.059 3.941 9 C -0.548 4.548 10 H 0.081 0.919 11 C -0.143 4.143 12 N -0.537 5.537 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.059 4.059 18 C -0.115 4.115 19 C -0.092 4.092 20 N -0.142 5.142 21 C -0.148 4.148 22 C -0.151 4.151 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.050 0.950 32 H 0.017 0.983 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.117 0.883 38 H 0.137 0.863 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.019 3.247 -12.009 15.365 hybrid contribution 0.246 0.508 0.980 1.131 sum -8.773 3.754 -11.029 14.584 Atomic orbital electron populations 1.22735 0.81997 1.02417 0.99406 1.87983 1.18686 1.27650 1.94959 1.22131 0.94591 0.84363 0.95702 1.22030 1.00212 0.99652 0.95829 1.21520 0.93937 1.00149 0.98910 1.21593 0.93748 0.93899 0.93362 1.62391 1.08639 1.48616 1.04892 1.19901 0.97418 0.95412 0.81410 1.21135 1.34297 1.03624 0.95719 0.91877 1.24934 0.96233 0.95620 0.97524 1.69924 1.46873 1.25847 1.11105 0.86638 0.80476 0.82213 0.78577 1.20317 1.21447 1.20166 1.22099 0.91513 0.92935 0.99403 1.20261 0.86292 1.03859 1.01106 1.29363 0.94700 0.92370 0.92774 1.81150 1.12217 1.09752 1.11104 1.21549 0.98373 1.00125 0.94709 1.21624 0.94231 1.00346 0.98933 0.94271 0.94672 0.89940 0.92969 0.92178 0.91463 0.90593 0.91083 0.94996 0.98255 0.94455 0.92893 0.88992 0.91677 0.88300 0.86298 0.92321 0.90308 0.91128 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 101.05 1.09 1.39 16 2 O -0.37 -4.79 9.00 -35.23 -0.32 -5.11 16 3 C 0.09 1.02 2.92 -26.73 -0.08 0.94 16 4 C -0.14 -1.70 5.63 -26.73 -0.15 -1.86 16 5 C -0.11 -1.68 4.72 -26.73 -0.13 -1.81 16 6 C 0.08 1.28 1.54 -67.72 -0.10 1.17 16 7 N -0.52 -9.81 4.59 -228.08 -1.05 -10.86 16 8 C 0.18 4.21 4.21 -4.97 -0.02 4.19 16 9 C -0.51 -13.22 8.31 -34.44 -0.29 -13.51 16 10 H 0.06 1.64 7.14 -52.49 -0.37 1.27 16 11 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -25.25 13.29 55.43 0.74 -24.52 16 13 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.07 1.20 4.72 -3.83 -0.02 1.18 16 18 C -0.07 -1.12 5.02 -29.52 -0.15 -1.26 16 19 C 0.23 3.71 15.43 -20.75 -0.32 3.39 16 20 N -0.46 -8.56 18.54 42.17 0.78 -7.77 16 21 C -0.11 -1.48 4.82 -26.73 -0.13 -1.61 16 22 C -0.11 -1.26 5.66 -26.73 -0.15 -1.41 16 23 H 0.04 0.35 7.87 -51.93 -0.41 -0.05 16 24 H 0.03 0.28 8.09 -51.93 -0.42 -0.14 16 25 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.50 7.79 -51.93 -0.40 0.10 16 27 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.32 7.68 -51.93 -0.40 0.92 16 30 H 0.07 1.25 6.19 -51.93 -0.32 0.93 16 31 H 0.03 0.48 6.26 -51.93 -0.33 0.16 16 32 H 0.00 -0.01 6.30 -51.93 -0.33 -0.33 16 33 H 0.04 0.93 5.84 -51.93 -0.30 0.62 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.09 1.76 6.65 -51.93 -0.35 1.42 16 36 H 0.06 0.98 6.34 -51.93 -0.33 0.65 16 37 H 0.10 1.28 6.32 -51.93 -0.33 0.95 16 38 H 0.12 2.03 6.50 -51.92 -0.34 1.69 16 39 H 0.06 0.75 6.42 -51.93 -0.33 0.42 16 40 H 0.08 1.21 7.68 -51.93 -0.40 0.81 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 327.36 15.07 4.93 4.93 Total: -1.00 -28.94 327.36 -7.06 -36.00 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.59 Total: -0.99 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.54 Total: -7.72 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.47 Total: -43.14 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.32 Total: -5.11 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.94 -7.06 -36.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255462801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.419 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds