Wall clock time and date at job start Mon Mar 30 2020 00:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00384 * 2 1 4 4 C 1.53001 * 109.47272 * 89.99609 * 3 2 1 5 5 C 1.53003 * 109.47073 * 60.00381 * 4 3 2 6 6 C 1.52994 * 109.47096 * 59.99628 * 5 4 3 7 7 N 1.46898 * 109.47150 * 180.02562 * 6 5 4 8 8 C 1.46904 * 111.00098 * 303.95601 * 7 6 5 9 9 C 1.50702 * 109.47295 * 172.79913 * 8 7 6 10 10 H 1.08000 * 119.99546 * 354.95598 * 9 8 7 11 11 C 1.37870 * 120.00041 * 174.95266 * 9 8 7 12 12 N 1.31510 * 120.00319 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00168 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46972 * 59.99760 * 13 11 9 15 15 H 1.48496 * 109.47430 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47036 * 299.99903 * 13 11 9 17 17 C 1.46907 * 111.00230 * 180.02562 * 7 6 5 18 18 C 1.52991 * 109.47198 * 59.25702 * 17 7 6 19 19 C 1.47196 * 109.47281 * 181.24850 * 18 17 7 20 20 N 8.27675 * 172.63702 * 12.17196 * 2 1 3 21 21 C 1.52995 * 109.47621 * 300.00392 * 6 5 4 22 22 C 1.52996 * 109.47416 * 209.99962 * 3 2 1 23 23 H 1.08999 * 109.47129 * 300.00541 * 1 2 3 24 24 H 1.09005 * 109.46825 * 59.99827 * 1 2 3 25 25 H 1.09000 * 109.47612 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47045 * 329.99881 * 3 2 1 27 27 H 1.09004 * 109.47321 * 300.00458 * 4 3 2 28 28 H 1.08997 * 109.47433 * 180.02562 * 4 3 2 29 29 H 1.09006 * 109.46816 * 300.00378 * 5 4 3 30 30 H 1.08998 * 109.47455 * 180.02562 * 5 4 3 31 31 H 1.09006 * 109.46675 * 60.00664 * 6 5 4 32 32 H 1.08998 * 109.47252 * 292.80176 * 8 7 6 33 33 H 1.09001 * 109.46942 * 52.80495 * 8 7 6 34 34 H 0.96996 * 120.00449 * 180.02562 * 12 11 9 35 35 H 1.09000 * 109.46713 * 179.26096 * 17 7 6 36 36 H 1.09003 * 109.46828 * 299.25636 * 17 7 6 37 37 H 1.09001 * 109.47480 * 301.24950 * 18 17 7 38 38 H 1.09008 * 109.47370 * 61.24792 * 18 17 7 39 39 H 1.09004 * 109.47479 * 179.97438 * 21 6 5 40 40 H 1.08997 * 109.47142 * 299.99857 * 21 6 5 41 41 H 1.08997 * 109.47095 * 180.02562 * 22 3 2 42 42 H 1.08997 * 109.47589 * 59.99718 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.2176 1.7714 1.4425 5 6 3.1514 0.7973 2.1638 6 6 4.5000 0.7550 1.4426 7 7 5.3964 -0.1806 2.1348 8 6 5.5447 0.1823 3.5505 9 6 6.3228 -0.8921 4.2657 10 1 6.6017 -1.7952 3.7432 11 6 6.6785 -0.7220 5.5868 12 7 6.3394 0.3780 6.2228 13 14 7.6437 -2.0534 6.4731 14 1 8.9378 -2.2723 5.7783 15 1 7.8995 -1.6304 7.8733 16 1 6.8615 -3.3157 6.4718 17 6 6.7042 -0.2468 1.4690 18 6 7.3399 1.1447 1.4538 19 6 8.6368 1.0842 0.7603 20 7 9.6375 1.0369 0.2236 21 6 4.2927 0.2892 0.0001 22 6 3.3589 1.2632 -0.7212 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.3450 1.9994 -0.5139 27 1 1.2568 1.8015 1.9563 28 1 2.6606 2.7673 1.4425 29 1 2.7081 -0.1985 2.1638 30 1 3.2989 1.1290 3.1916 31 1 4.9434 1.7509 1.4426 32 1 6.0775 1.1300 3.6289 33 1 4.5591 0.2809 4.0055 34 1 6.5900 0.4978 7.1521 35 1 7.3525 -0.9366 2.0094 36 1 6.5734 -0.5977 0.4453 37 1 6.6813 1.8394 0.9326 38 1 7.4911 1.4863 2.4779 39 1 5.2535 0.2595 -0.5139 40 1 3.8493 -0.7066 0.0001 41 1 3.8025 2.2588 -0.7208 42 1 3.2112 0.9312 -1.7488 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255462801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:35 Heat of formation + Delta-G solvation = -44.389255 kcal Electronic energy + Delta-G solvation = -21141.617716 eV Core-core repulsion = 18120.707836 eV Total energy + Delta-G solvation = -3020.909880 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.70683 -38.91904 -37.46198 -35.84388 -34.52954 -32.24461 -31.29602 -30.14539 -27.93183 -27.14900 -25.54574 -23.70601 -22.97756 -21.21138 -20.29403 -18.67142 -18.21822 -17.28907 -16.78490 -16.64980 -16.25132 -16.11333 -15.80712 -15.27777 -14.76634 -14.66405 -14.28953 -14.14110 -13.97247 -13.52544 -13.45110 -13.36173 -13.20544 -12.88279 -12.79586 -12.60048 -12.56288 -12.44297 -12.17149 -12.00024 -11.85879 -11.66983 -11.25039 -11.19059 -10.98980 -10.87071 -10.48850 -10.16796 -8.80072 -8.11676 -6.17694 1.44898 1.45249 1.52600 1.76802 1.80218 2.45319 2.99278 3.07395 3.22318 3.48433 3.89375 3.97800 4.11811 4.24355 4.30697 4.39965 4.48905 4.51044 4.59191 4.61327 4.68718 4.74433 4.77650 4.82353 4.93240 4.96685 5.06134 5.16870 5.20295 5.28217 5.40484 5.43889 5.47545 5.51312 5.58293 5.68477 5.81070 6.21265 6.45098 6.49323 6.60588 6.83180 6.99848 7.50937 8.97864 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015659 B = 0.006067 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.733636 B = 4614.310242 C = 5892.799130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.088 3.912 4 C -0.134 4.134 5 C -0.103 4.103 6 C 0.082 3.918 7 N -0.534 5.534 8 C 0.200 3.800 9 C -0.517 4.517 10 H 0.058 0.942 11 C 0.010 3.990 12 N -0.929 5.929 13 Si 0.949 3.051 14 H -0.273 1.273 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.073 3.927 18 C -0.059 4.059 19 C 0.246 3.754 20 N -0.495 5.495 21 C -0.102 4.102 22 C -0.110 4.110 23 H 0.041 0.959 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.045 0.955 32 H -0.013 1.013 33 H 0.013 0.987 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.131 0.869 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.091 0.909 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.896 4.494 -13.206 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C 0.031 3.969 4 C -0.172 4.172 5 C -0.141 4.141 6 C -0.026 4.026 7 N -0.256 5.256 8 C 0.074 3.926 9 C -0.555 4.555 10 H 0.076 0.924 11 C -0.188 4.188 12 N -0.570 5.570 13 Si 0.776 3.224 14 H -0.199 1.199 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.057 4.057 18 C -0.101 4.101 19 C -0.071 4.071 20 N -0.173 5.173 21 C -0.140 4.140 22 C -0.148 4.148 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.005 0.995 33 H 0.031 0.969 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.510 3.858 -13.845 17.234 hybrid contribution 0.332 0.285 1.532 1.593 sum -9.179 4.143 -12.314 15.907 Atomic orbital electron populations 1.22885 0.80637 1.03123 1.00403 1.87957 1.20369 1.28692 1.95055 1.22225 0.95365 0.84443 0.94883 1.22007 0.99477 0.99248 0.96455 1.21414 0.94996 0.99735 0.97961 1.21713 0.92721 0.93806 0.94336 1.62273 1.10120 1.50045 1.03191 1.19514 0.95257 0.93943 0.83884 1.21480 1.33955 1.04043 0.96051 0.92383 1.25642 0.97301 0.97428 0.98417 1.70029 1.48214 1.27455 1.11296 0.85738 0.79300 0.79897 0.77485 1.19862 1.21237 1.19825 1.22039 0.90293 0.93425 0.99957 1.20152 0.86167 1.03378 1.00389 1.29392 0.94391 0.91367 0.91941 1.81177 1.13045 1.10786 1.12306 1.21464 0.99525 0.99745 0.93248 1.21657 0.93435 1.00646 0.99087 0.94082 0.92757 0.89564 0.90330 0.91825 0.89943 0.93063 0.94047 0.93696 0.99502 0.96860 0.92991 0.91635 0.89197 0.85122 0.88079 0.91196 0.92460 0.89066 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.82 113.37 1.23 1.67 16 2 O -0.40 -9.61 9.00 -148.98 -1.34 -10.95 16 3 C 0.09 1.76 2.92 30.59 0.09 1.84 16 4 C -0.13 -3.05 5.63 30.60 0.17 -2.88 16 5 C -0.10 -3.24 4.72 30.59 0.14 -3.10 16 6 C 0.08 2.45 1.54 44.91 0.07 2.52 16 7 N -0.53 -20.03 4.59 -875.52 -4.02 -24.06 16 8 C 0.20 9.43 4.21 85.56 0.36 9.79 16 9 C -0.52 -27.38 8.31 25.60 0.21 -27.17 16 10 H 0.06 3.07 7.14 -2.91 -0.02 3.05 16 11 C 0.01 0.57 5.46 84.65 0.46 1.03 16 12 N -0.93 -53.27 13.29 21.44 0.28 -52.99 16 13 Si 0.95 43.58 29.54 68.60 2.03 45.60 16 14 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 15 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 C 0.07 2.40 4.72 86.30 0.41 2.81 16 18 C -0.06 -1.71 5.02 28.78 0.14 -1.57 16 19 C 0.25 7.71 15.43 89.44 1.38 9.09 16 20 N -0.49 -17.59 18.54 20.01 0.37 -17.22 16 21 C -0.10 -2.52 4.82 30.59 0.15 -2.37 16 22 C -0.11 -2.07 5.66 30.59 0.17 -1.90 16 23 H 0.04 0.68 7.87 -2.39 -0.02 0.66 16 24 H 0.05 0.72 8.09 -2.38 -0.02 0.70 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.19 7.79 -2.39 -0.02 1.17 16 27 H 0.06 1.40 7.87 -2.39 -0.02 1.38 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.05 1.83 7.68 -2.38 -0.02 1.81 16 30 H 0.04 1.52 6.19 -2.39 -0.01 1.50 16 31 H 0.05 1.25 6.26 -2.38 -0.01 1.23 16 32 H -0.01 -0.62 6.30 -2.39 -0.02 -0.64 16 33 H 0.01 0.70 5.84 -2.39 -0.01 0.68 16 34 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 35 H 0.07 2.51 6.65 -2.39 -0.02 2.50 16 36 H 0.09 2.53 6.34 -2.39 -0.02 2.52 16 37 H 0.13 2.98 6.32 -2.39 -0.02 2.97 16 38 H 0.10 3.42 6.50 -2.38 -0.02 3.40 16 39 H 0.07 1.56 6.42 -2.39 -0.02 1.54 16 40 H 0.06 1.68 7.68 -2.39 -0.02 1.66 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -63.22 327.36 3.31 -59.91 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 1.00 Total: 9.92 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 4.99 Total: -10.21 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -3.37 Total: -94.27 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -1.34 Total: -10.95 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -63.22 3.31 -59.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255462801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.517 kcal (2) G-P(sol) polarization free energy of solvation -63.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds