Wall clock time and date at job start Mon Mar 30 2020 01:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.46847 * 2 1 4 4 N 1.46902 * 109.46806 * 185.05082 * 3 2 1 5 5 C 1.46896 * 111.00109 * 68.39017 * 4 3 2 6 6 C 1.50701 * 109.46940 * 66.05067 * 5 4 3 7 7 H 1.07999 * 119.99874 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00246 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99586 * 359.97438 * 8 6 5 10 10 Si 1.86789 * 120.00376 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47208 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47213 * 119.99736 * 10 8 6 13 13 H 1.48497 * 109.47278 * 239.99970 * 10 8 6 14 14 C 1.46901 * 111.00123 * 304.43639 * 4 3 2 15 15 C 1.53099 * 109.52557 * 306.83108 * 14 4 3 16 16 C 1.53042 * 109.29050 * 182.43161 * 15 14 4 17 17 N 1.46848 * 109.50982 * 59.18641 * 16 15 14 18 18 C 1.46903 * 110.99667 * 174.16785 * 17 16 15 19 19 C 1.53007 * 117.49494 * 248.62028 * 18 17 16 20 20 C 1.52998 * 117.49781 * 179.97438 * 18 17 16 21 21 C 1.46848 * 111.19767 * 298.25580 * 17 16 15 22 22 C 1.53044 * 109.51656 * 61.75006 * 21 17 16 23 23 H 1.09002 * 109.46834 * 300.00050 * 1 2 3 24 24 H 1.09002 * 109.47002 * 59.99714 * 1 2 3 25 25 H 1.08994 * 109.46818 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47100 * 240.00394 * 2 1 3 27 27 H 1.08999 * 109.47263 * 119.99832 * 2 1 3 28 28 H 1.09004 * 109.47105 * 65.05323 * 3 2 1 29 29 H 1.08991 * 109.47193 * 305.04811 * 3 2 1 30 30 H 1.09001 * 109.47294 * 186.04226 * 5 4 3 31 31 H 1.08996 * 109.47288 * 306.04647 * 5 4 3 32 32 H 0.97000 * 119.99511 * 179.97438 * 9 8 6 33 33 H 1.09000 * 109.52205 * 67.01968 * 14 4 3 34 34 H 1.09000 * 109.49216 * 62.49354 * 15 14 4 35 35 H 1.09002 * 109.50371 * 302.38476 * 15 14 4 36 36 H 1.08996 * 109.46511 * 299.17483 * 16 15 14 37 37 H 1.09004 * 109.46271 * 179.19171 * 16 15 14 38 38 H 1.08997 * 115.55042 * 34.32262 * 18 17 16 39 39 H 1.08994 * 117.49783 * 359.97438 * 19 18 17 40 40 H 1.08999 * 117.49726 * 145.02066 * 19 18 17 41 41 H 1.09000 * 117.49970 * 214.97472 * 20 18 17 42 42 H 1.09001 * 117.50104 * 359.97438 * 20 18 17 43 43 H 1.09004 * 109.46428 * 181.75735 * 21 17 16 44 44 H 1.09000 * 109.46610 * 301.74625 * 21 17 16 45 45 H 1.09000 * 109.50710 * 60.76177 * 22 21 17 46 46 H 1.09002 * 109.50132 * 180.83971 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5039 1.4444 -0.1219 5 6 3.9221 0.9776 -1.4505 6 6 3.4743 1.9676 -2.4947 7 1 2.9328 2.8546 -2.2008 8 6 3.7549 1.7406 -3.8254 9 7 4.4139 0.6601 -4.1833 10 14 3.1992 2.9673 -5.1197 11 1 2.4818 4.0893 -4.4627 12 1 4.3840 3.4933 -5.8442 13 1 2.2895 2.2943 -6.0813 14 6 4.1215 0.6366 0.9383 15 6 3.6083 1.1045 2.3027 16 6 4.3004 0.3008 3.4060 17 7 5.7532 0.4952 3.3166 18 6 6.4408 -0.1498 4.4432 19 6 7.1056 0.7592 5.4790 20 6 7.9659 -0.0393 4.4967 21 6 6.2760 0.0094 2.0333 22 6 5.6426 0.8045 0.8892 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.7524 1.9296 0.9318 29 1 1.6047 1.9818 -0.8412 30 1 5.0080 0.8864 -1.4784 31 1 3.4706 0.0065 -1.6532 32 1 4.6110 0.5002 -5.1195 33 1 3.8659 -0.4129 0.7923 34 1 2.5311 0.9477 2.3594 35 1 3.8296 2.1641 2.4309 36 1 4.0674 -0.7571 3.2852 37 1 3.9475 0.6416 4.3794 38 1 5.9906 -1.0758 4.8009 39 1 7.0331 1.8357 5.3242 40 1 7.0928 0.4313 6.5184 41 1 8.5188 -0.8923 4.8903 42 1 8.4590 0.5116 3.6958 43 1 7.3581 0.1384 2.0096 44 1 6.0335 -1.0471 1.9188 45 1 5.8960 1.8594 0.9952 46 1 6.0196 0.4337 -0.0640 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256076809.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:10 Heat of formation + Delta-G solvation = 25.041625 kcal Electronic energy + Delta-G solvation = -21446.059239 eV Core-core repulsion = 18563.993202 eV Total energy + Delta-G solvation = -2882.066037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.45233 -37.63337 -35.25372 -32.87064 -32.14254 -30.61403 -29.96586 -26.87625 -25.15911 -23.26278 -22.97883 -22.10449 -21.62556 -20.88680 -19.99324 -18.51720 -16.72672 -16.14403 -15.45864 -14.81457 -14.69640 -14.49218 -14.38084 -13.96892 -13.67640 -13.31448 -13.02078 -12.61157 -12.44210 -12.13153 -11.98990 -11.63545 -11.49234 -11.34525 -11.07111 -10.99532 -10.82387 -10.80313 -10.65388 -10.58074 -10.39140 -10.21352 -10.09496 -9.97568 -9.83916 -9.38664 -9.07954 -8.37879 -8.20159 -7.07347 -5.98896 -3.98747 3.32830 3.40471 3.45399 3.69964 3.85024 4.45534 4.85243 4.87933 4.90209 5.05601 5.18722 5.23267 5.36734 5.47745 5.51479 5.53543 5.56064 5.57813 5.66670 5.69218 5.79302 5.84883 5.92006 6.00017 6.04947 6.08466 6.12941 6.17043 6.28884 6.33207 6.39346 6.49985 6.51693 6.66041 6.76690 6.88602 6.97992 7.21991 7.26126 7.40678 7.48165 7.86892 8.18028 8.30279 8.63897 9.09339 9.64888 11.11974 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.021721 B = 0.004875 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.742537 B = 5741.959284 C = 6622.756759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.162 4.162 3 C 0.064 3.936 4 N -0.530 5.530 5 C 0.188 3.812 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.086 3.914 15 C -0.110 4.110 16 C 0.064 3.936 17 N -0.509 5.509 18 C 0.006 3.994 19 C -0.165 4.165 20 C -0.177 4.177 21 C 0.061 3.939 22 C -0.109 4.109 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.033 0.967 31 H -0.007 1.007 32 H 0.259 0.741 33 H 0.027 0.973 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.028 0.972 45 H 0.076 0.924 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 -2.829 16.271 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C -0.065 4.065 4 N -0.252 5.252 5 C 0.063 3.937 6 C -0.540 4.540 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.023 4.023 15 C -0.148 4.148 16 C -0.064 4.064 17 N -0.234 5.234 18 C -0.103 4.103 19 C -0.203 4.203 20 C -0.214 4.214 21 C -0.067 4.067 22 C -0.147 4.147 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.011 0.989 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.095 0.905 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.312 -1.916 16.165 16.331 hybrid contribution -0.689 -1.261 -1.005 1.753 sum 0.624 -3.177 15.160 15.502 Atomic orbital electron populations 1.21660 0.96501 1.00594 1.01332 1.22190 0.95616 1.00564 1.01726 1.22099 0.88964 0.94228 1.01189 1.62370 1.06102 1.52411 1.04348 1.19802 0.96316 0.94429 0.83199 1.21212 1.35275 1.06907 0.90610 0.91944 1.24965 0.95502 0.95545 0.98603 1.69972 1.40884 1.26284 1.16838 0.86499 0.78349 0.81371 0.81561 1.19684 1.21085 1.21240 1.21516 0.94286 0.94840 0.91661 1.21714 0.98800 1.01015 0.93305 1.22054 0.86917 0.97971 0.99450 1.61758 1.03981 1.56588 1.01063 1.22399 0.94004 0.97651 0.96288 1.23052 1.03397 0.99065 0.94743 1.23053 0.92552 1.02954 1.02888 1.22120 0.99403 0.96632 0.88511 1.21667 0.94745 1.01415 0.96837 0.93452 0.92640 0.93750 0.91204 0.93138 0.92772 0.90070 0.94911 0.98883 0.93123 0.95490 0.91582 0.90490 0.95390 0.91079 0.89741 0.88172 0.89151 0.88971 0.88219 0.90876 0.95344 0.90542 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.16 -2.85 5.01 -26.73 -0.13 -2.98 16 3 C 0.06 1.22 4.64 -3.82 -0.02 1.20 16 4 N -0.53 -11.22 4.57 -227.95 -1.04 -12.26 16 5 C 0.19 4.79 4.44 -4.98 -0.02 4.77 16 6 C -0.50 -13.97 8.39 -34.44 -0.29 -14.26 16 7 H 0.06 1.74 7.16 -52.49 -0.38 1.36 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 10 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.09 1.55 1.36 -67.60 -0.09 1.45 16 15 C -0.11 -1.67 4.68 -26.66 -0.12 -1.79 16 16 C 0.06 0.85 5.43 -3.83 -0.02 0.83 16 17 N -0.51 -6.90 4.80 -226.68 -1.09 -7.99 16 18 C 0.01 0.06 5.30 -67.71 -0.36 -0.30 16 19 C -0.16 -1.62 10.46 -26.70 -0.28 -1.90 16 20 C -0.18 -1.77 9.70 -26.70 -0.26 -2.03 16 21 C 0.06 0.89 5.34 -3.83 -0.02 0.87 16 22 C -0.11 -1.90 5.19 -26.65 -0.14 -2.03 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 1.44 6.32 -51.93 -0.33 1.11 16 27 H 0.05 0.83 6.10 -51.93 -0.32 0.52 16 28 H 0.05 0.93 6.55 -51.93 -0.34 0.59 16 29 H 0.08 1.73 6.67 -51.93 -0.35 1.38 16 30 H 0.03 0.90 6.01 -51.93 -0.31 0.58 16 31 H -0.01 -0.18 6.24 -51.93 -0.32 -0.50 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.03 0.52 6.78 -51.93 -0.35 0.17 16 34 H 0.07 0.95 5.89 -51.93 -0.31 0.65 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 38 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 1.06 7.23 -51.93 -0.38 0.69 16 43 H 0.07 0.99 6.68 -51.93 -0.35 0.64 16 44 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.07 1.44 6.41 -51.93 -0.33 1.10 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -28.83 342.80 -10.99 -39.82 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.26 Total: 0.94 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.49 Total: -16.47 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -1.39 Total: -46.16 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.83 -10.99 -39.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256076809.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.866 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds