Wall clock time and date at job start Mon Mar 30 2020 01:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47691 * 2 1 4 4 C 1.52997 * 109.47355 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47034 * 179.97438 * 4 3 2 6 6 C 1.36940 * 120.00131 * 269.99855 * 5 4 3 7 7 H 1.08000 * 119.99810 * 141.81131 * 6 5 4 8 8 C 1.38812 * 119.99892 * 321.80776 * 6 5 4 9 9 N 1.31620 * 119.99921 * 339.21492 * 8 6 5 10 10 Si 1.86800 * 120.00146 * 159.20941 * 8 6 5 11 11 H 1.48501 * 109.46908 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47314 * 120.00210 * 10 8 6 13 13 H 1.48494 * 109.47102 * 240.00621 * 10 8 6 14 14 C 1.46502 * 120.00217 * 89.99804 * 5 4 3 15 15 C 1.53120 * 109.57579 * 125.37156 * 14 5 4 16 16 C 1.53037 * 109.27818 * 177.60478 * 15 14 5 17 17 N 1.46854 * 109.51249 * 300.80667 * 16 15 14 18 18 C 1.46897 * 110.99728 * 185.84731 * 17 16 15 19 19 C 1.53008 * 117.49905 * 248.62162 * 18 17 16 20 20 C 1.53000 * 60.00036 * 252.51110 * 19 18 17 21 21 C 1.46841 * 111.19852 * 61.74766 * 17 16 15 22 22 C 1.53040 * 109.52486 * 298.25817 * 21 17 16 23 23 H 1.09000 * 109.47207 * 300.00594 * 1 2 3 24 24 H 1.09004 * 109.47231 * 59.99620 * 1 2 3 25 25 H 1.08993 * 109.47878 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46917 * 239.99813 * 2 1 3 27 27 H 1.09003 * 109.47183 * 119.99828 * 2 1 3 28 28 H 1.09000 * 109.47280 * 59.99451 * 3 2 1 29 29 H 1.09003 * 109.46667 * 300.00144 * 3 2 1 30 30 H 1.09004 * 109.47223 * 59.99832 * 4 3 2 31 31 H 1.09003 * 109.47213 * 299.99641 * 4 3 2 32 32 H 0.97003 * 120.00182 * 179.97438 * 9 8 6 33 33 H 1.09003 * 109.52115 * 5.20771 * 14 5 4 34 34 H 1.08997 * 109.51022 * 57.65739 * 15 14 5 35 35 H 1.08998 * 109.49767 * 297.53983 * 15 14 5 36 36 H 1.08999 * 109.46455 * 180.79745 * 16 15 14 37 37 H 1.08997 * 109.46482 * 60.81784 * 16 15 14 38 38 H 1.09002 * 115.55420 * 34.32793 * 18 17 16 39 39 H 1.09001 * 117.49640 * 0.02562 * 19 18 17 40 40 H 1.08998 * 117.49872 * 145.02097 * 19 18 17 41 41 H 1.08995 * 117.49712 * 252.51139 * 20 19 18 42 42 H 1.08994 * 117.50011 * 107.48309 * 20 19 18 43 43 H 1.09009 * 109.46217 * 58.27613 * 21 17 16 44 44 H 1.09001 * 109.46373 * 178.24809 * 21 17 16 45 45 H 1.09003 * 109.50161 * 179.11955 * 22 21 17 46 46 H 1.08995 * 109.49795 * 299.19664 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8235 -0.0013 6 6 4.2862 3.4687 -1.1875 7 1 4.0433 4.5163 -1.2877 8 6 4.8295 2.7763 -2.2610 9 7 5.4951 1.6597 -2.0549 10 14 4.6158 3.4293 -3.9980 11 1 3.8345 4.6915 -3.9597 12 1 5.9495 3.6912 -4.5960 13 1 3.8938 2.4245 -4.8191 14 6 4.3032 3.5146 1.2671 15 6 5.7389 4.0461 1.2931 16 6 5.9685 4.8178 2.5946 17 7 5.0141 5.9305 2.6800 18 6 5.2945 6.7761 3.8481 19 6 4.2785 6.7604 4.9919 20 6 4.3851 7.9844 4.0802 21 6 3.6296 5.4419 2.7043 22 6 3.3302 4.6886 1.4062 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9286 -0.8909 31 1 3.9338 0.9284 0.8892 32 1 5.8745 1.1757 -2.8050 33 1 4.1567 2.8201 2.0944 34 1 5.8965 4.7105 0.4435 35 1 6.4371 3.2110 1.2372 36 1 6.9855 5.2096 2.6099 37 1 5.8241 4.1494 3.4434 38 1 6.3472 6.8806 4.1110 39 1 3.4021 6.1223 4.8779 40 1 4.6626 6.8544 6.0076 41 1 4.8394 8.8836 4.4961 42 1 3.5788 8.1519 3.3662 43 1 3.4961 4.7707 3.5528 44 1 2.9477 6.2870 2.7992 45 1 2.3074 4.3126 1.4313 46 1 3.4493 5.3632 0.5584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256081268.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:38 Heat of formation + Delta-G solvation = 34.128832 kcal Electronic energy + Delta-G solvation = -21520.313766 eV Core-core repulsion = 18638.641780 eV Total energy + Delta-G solvation = -2881.671986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.28936 -36.83008 -35.04020 -33.50779 -31.49425 -30.24249 -29.63782 -27.43718 -24.59027 -23.49614 -22.52297 -22.32526 -21.16500 -20.25924 -19.84328 -18.90350 -16.54785 -16.11087 -15.23356 -15.01570 -14.49938 -14.03507 -13.92351 -13.66541 -13.37161 -13.31163 -12.85302 -12.66184 -12.12043 -11.97220 -11.64608 -11.60396 -11.47621 -11.19164 -11.01074 -10.95003 -10.72059 -10.56192 -10.43959 -10.41630 -10.31177 -10.14023 -10.08044 -9.80464 -9.67719 -9.38060 -9.24049 -8.38252 -7.82572 -6.44528 -5.69462 -3.27955 3.39544 3.48612 3.51533 3.80861 4.21221 4.53897 4.90583 4.98575 5.07519 5.26154 5.35782 5.44849 5.53957 5.55105 5.65196 5.67101 5.75040 5.76736 5.85547 5.87629 5.95188 6.09670 6.14358 6.15795 6.20619 6.29777 6.33082 6.39444 6.45075 6.49866 6.59105 6.67842 6.79911 6.86162 6.96538 6.96747 7.20353 7.33485 7.36386 7.48386 7.52474 7.81083 7.93272 8.62512 9.29631 9.91698 10.50745 11.29671 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.006055 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.082094 B = 4623.058266 C = 5761.788694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.133 4.133 4 C 0.148 3.852 5 N -0.580 5.580 6 C -0.246 4.246 7 H 0.060 0.940 8 C 0.012 3.988 9 N -0.888 5.888 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.177 3.823 15 C -0.115 4.115 16 C 0.061 3.939 17 N -0.503 5.503 18 C 0.027 3.973 19 C -0.226 4.226 20 C -0.175 4.175 21 C 0.058 3.942 22 C -0.125 4.125 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.018 0.982 32 H 0.252 0.748 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.029 0.971 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.699 4.288 10.745 12.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.173 4.173 4 C 0.022 3.978 5 N -0.299 5.299 6 C -0.376 4.376 7 H 0.077 0.923 8 C -0.188 4.188 9 N -0.531 5.531 10 Si 0.720 3.280 11 H -0.201 1.201 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.070 3.930 15 C -0.154 4.154 16 C -0.066 4.066 17 N -0.225 5.225 18 C -0.082 4.082 19 C -0.265 4.265 20 C -0.213 4.213 21 C -0.070 4.070 22 C -0.165 4.165 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.132 0.868 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.047 0.953 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.532 4.427 10.165 11.636 hybrid contribution -0.237 -0.138 -0.179 0.328 sum -3.769 4.288 9.986 11.503 Atomic orbital electron populations 1.21768 0.97092 1.00380 1.01292 1.21483 0.94570 0.98747 1.01198 1.22198 1.00523 0.94006 1.00563 1.20941 0.89206 0.86544 1.01144 1.43857 1.74295 1.11344 1.00379 1.18943 1.34992 0.95291 0.88414 0.92270 1.25150 0.96697 0.98054 0.98883 1.70007 1.34987 1.18337 1.29806 0.86416 0.77463 0.78543 0.85533 1.20146 1.21800 1.21631 1.20372 0.91791 0.91804 0.89058 1.21921 0.98873 0.99073 0.95577 1.22177 0.94982 0.91027 0.98462 1.61796 1.03611 1.20810 1.36274 1.22675 0.95952 0.98697 0.90920 1.23536 1.03884 1.02839 0.96257 1.23025 1.03334 0.92367 1.02550 1.22204 0.88950 0.97685 0.98141 1.22085 0.99592 0.98808 0.95982 0.93368 0.93091 0.93735 0.92393 0.93015 0.94236 0.92510 0.88999 0.96399 0.93839 0.94223 0.90445 0.91932 0.91617 0.95659 0.86754 0.88401 0.89304 0.88877 0.88639 0.95302 0.91739 0.92549 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.12 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.63 5.54 -26.73 -0.15 -2.78 16 4 C 0.15 3.40 5.28 -4.04 -0.02 3.38 16 5 N -0.58 -13.88 2.37 -165.52 -0.39 -14.27 16 6 C -0.25 -6.51 8.01 -15.06 -0.12 -6.63 16 7 H 0.06 1.60 7.03 -52.49 -0.37 1.24 16 8 C 0.01 0.32 4.96 -17.43 -0.09 0.24 16 9 N -0.89 -25.18 11.48 55.49 0.64 -24.54 16 10 Si 0.89 21.57 29.60 -169.99 -5.03 16.54 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 C 0.18 3.66 2.70 -67.81 -0.18 3.47 16 15 C -0.12 -2.31 5.31 -26.65 -0.14 -2.45 16 16 C 0.06 1.00 5.44 -3.83 -0.02 0.98 16 17 N -0.50 -7.93 4.88 -226.68 -1.11 -9.04 16 18 C 0.03 0.36 6.11 -67.71 -0.41 -0.06 16 19 C -0.23 -2.58 9.58 -26.73 -0.26 -2.84 16 20 C -0.17 -2.01 9.94 -26.73 -0.27 -2.27 16 21 C 0.06 0.91 4.12 -3.84 -0.02 0.90 16 22 C -0.12 -2.32 5.45 -26.65 -0.15 -2.47 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 2.41 5.54 -51.93 -0.29 2.13 16 31 H 0.02 0.40 7.88 -51.93 -0.41 -0.01 16 32 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.04 0.81 7.77 -51.93 -0.40 0.40 16 34 H 0.08 1.75 7.48 -51.93 -0.39 1.36 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.11 1.36 8.04 -51.93 -0.42 0.94 16 39 H 0.10 1.17 5.97 -51.93 -0.31 0.86 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 1.16 7.23 -51.93 -0.38 0.79 16 43 H 0.03 0.44 7.12 -51.92 -0.37 0.07 16 44 H 0.06 0.94 6.43 -51.93 -0.33 0.61 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.07 1.50 7.13 -51.93 -0.37 1.13 16 LS Contribution 349.62 15.07 5.27 5.27 Total: -1.00 -27.30 349.62 -10.89 -38.20 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.66 Total: 2.30 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -1.61 Total: -14.46 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.86 Total: -47.85 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.30 -10.89 -38.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256081268.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.327 kcal (2) G-P(sol) polarization free energy of solvation -27.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds