Wall clock time and date at job start Mon Mar 30 2020 01:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47691 * 2 1 4 4 C 1.52997 * 109.47355 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47034 * 179.97438 * 4 3 2 6 6 C 1.36940 * 120.00131 * 269.99855 * 5 4 3 7 7 H 1.08000 * 119.99810 * 141.81131 * 6 5 4 8 8 C 1.38812 * 119.99892 * 321.80776 * 6 5 4 9 9 N 1.31620 * 119.99921 * 339.21492 * 8 6 5 10 10 Si 1.86800 * 120.00146 * 159.20941 * 8 6 5 11 11 H 1.48501 * 109.46908 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47314 * 120.00210 * 10 8 6 13 13 H 1.48494 * 109.47102 * 240.00621 * 10 8 6 14 14 C 1.46502 * 120.00217 * 89.99804 * 5 4 3 15 15 C 1.53120 * 109.57579 * 125.37156 * 14 5 4 16 16 C 1.53037 * 109.27818 * 177.60478 * 15 14 5 17 17 N 1.46854 * 109.51249 * 300.80667 * 16 15 14 18 18 C 1.46897 * 110.99728 * 185.84731 * 17 16 15 19 19 C 1.53008 * 117.49905 * 248.62162 * 18 17 16 20 20 C 1.53000 * 60.00036 * 252.51110 * 19 18 17 21 21 C 1.46841 * 111.19852 * 61.74766 * 17 16 15 22 22 C 1.53040 * 109.52486 * 298.25817 * 21 17 16 23 23 H 1.09000 * 109.47207 * 300.00594 * 1 2 3 24 24 H 1.09004 * 109.47231 * 59.99620 * 1 2 3 25 25 H 1.08993 * 109.47878 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46917 * 239.99813 * 2 1 3 27 27 H 1.09003 * 109.47183 * 119.99828 * 2 1 3 28 28 H 1.09000 * 109.47280 * 59.99451 * 3 2 1 29 29 H 1.09003 * 109.46667 * 300.00144 * 3 2 1 30 30 H 1.09004 * 109.47223 * 59.99832 * 4 3 2 31 31 H 1.09003 * 109.47213 * 299.99641 * 4 3 2 32 32 H 0.97003 * 120.00182 * 179.97438 * 9 8 6 33 33 H 1.09003 * 109.52115 * 5.20771 * 14 5 4 34 34 H 1.08997 * 109.51022 * 57.65739 * 15 14 5 35 35 H 1.08998 * 109.49767 * 297.53983 * 15 14 5 36 36 H 1.08999 * 109.46455 * 180.79745 * 16 15 14 37 37 H 1.08997 * 109.46482 * 60.81784 * 16 15 14 38 38 H 1.09002 * 115.55420 * 34.32793 * 18 17 16 39 39 H 1.09001 * 117.49640 * 0.02562 * 19 18 17 40 40 H 1.08998 * 117.49872 * 145.02097 * 19 18 17 41 41 H 1.08995 * 117.49712 * 252.51139 * 20 19 18 42 42 H 1.08994 * 117.50011 * 107.48309 * 20 19 18 43 43 H 1.09009 * 109.46217 * 58.27613 * 21 17 16 44 44 H 1.09001 * 109.46373 * 178.24809 * 21 17 16 45 45 H 1.09003 * 109.50161 * 179.11955 * 22 21 17 46 46 H 1.08995 * 109.49795 * 299.19664 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8235 -0.0013 6 6 4.2862 3.4687 -1.1875 7 1 4.0433 4.5163 -1.2877 8 6 4.8295 2.7763 -2.2610 9 7 5.4951 1.6597 -2.0549 10 14 4.6158 3.4293 -3.9980 11 1 3.8345 4.6915 -3.9597 12 1 5.9495 3.6912 -4.5960 13 1 3.8938 2.4245 -4.8191 14 6 4.3032 3.5146 1.2671 15 6 5.7389 4.0461 1.2931 16 6 5.9685 4.8178 2.5946 17 7 5.0141 5.9305 2.6800 18 6 5.2945 6.7761 3.8481 19 6 4.2785 6.7604 4.9919 20 6 4.3851 7.9844 4.0802 21 6 3.6296 5.4419 2.7043 22 6 3.3302 4.6886 1.4062 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.9330 0.9286 -0.8909 31 1 3.9338 0.9284 0.8892 32 1 5.8745 1.1757 -2.8050 33 1 4.1567 2.8201 2.0944 34 1 5.8965 4.7105 0.4435 35 1 6.4371 3.2110 1.2372 36 1 6.9855 5.2096 2.6099 37 1 5.8241 4.1494 3.4434 38 1 6.3472 6.8806 4.1110 39 1 3.4021 6.1223 4.8779 40 1 4.6626 6.8544 6.0076 41 1 4.8394 8.8836 4.4961 42 1 3.5788 8.1519 3.3662 43 1 3.4961 4.7707 3.5528 44 1 2.9477 6.2870 2.7992 45 1 2.3074 4.3126 1.4313 46 1 3.4493 5.3632 0.5584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256081268.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:37 Heat of formation + Delta-G solvation = 20.375010 kcal Electronic energy + Delta-G solvation = -21520.910177 eV Core-core repulsion = 18638.641780 eV Total energy + Delta-G solvation = -2882.268396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.56031 -38.37802 -36.43021 -35.06806 -33.29487 -31.70529 -31.16234 -29.09751 -26.42199 -24.89304 -23.94726 -23.25338 -22.66063 -21.68940 -21.42661 -20.37297 -18.17388 -17.60272 -16.84651 -16.31564 -16.11634 -15.71941 -15.44259 -15.13508 -14.81637 -14.69152 -14.31394 -14.02881 -13.61587 -13.49396 -13.11098 -12.98020 -12.82232 -12.80981 -12.65857 -12.45477 -12.32662 -12.14784 -11.87367 -11.80188 -11.76795 -11.68956 -11.45037 -11.36305 -11.18628 -11.09438 -10.90061 -10.43404 -8.98089 -8.44744 -7.74417 -5.36967 1.43139 1.47178 1.56133 2.53292 2.76690 3.16776 3.29791 3.60077 3.89999 4.04209 4.08023 4.14694 4.19998 4.22048 4.31178 4.40064 4.44723 4.46702 4.58085 4.66238 4.72296 4.77760 4.81025 4.87521 4.91568 4.93976 4.99109 5.05424 5.09588 5.13113 5.18772 5.26962 5.29313 5.30066 5.35353 5.48434 5.59706 5.61977 5.69431 5.76814 5.92732 6.20687 6.28718 6.55648 7.25967 7.95771 8.48358 9.20099 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.015491 B = 0.006055 C = 0.004858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.082094 B = 4623.058266 C = 5761.788694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.118 4.118 4 C 0.148 3.852 5 N -0.594 5.594 6 C -0.241 4.241 7 H 0.048 0.952 8 C -0.035 4.035 9 N -0.917 5.917 10 Si 0.945 3.055 11 H -0.272 1.272 12 H -0.293 1.293 13 H -0.290 1.290 14 C 0.173 3.827 15 C -0.106 4.106 16 C 0.073 3.927 17 N -0.520 5.520 18 C 0.008 3.992 19 C -0.213 4.213 20 C -0.169 4.169 21 C 0.068 3.932 22 C -0.113 4.113 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.059 0.941 31 H 0.020 0.980 32 H 0.248 0.752 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.040 0.960 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 5.195 12.738 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C -0.158 4.158 4 C 0.022 3.978 5 N -0.313 5.313 6 C -0.372 4.372 7 H 0.066 0.934 8 C -0.232 4.232 9 N -0.562 5.562 10 Si 0.774 3.226 11 H -0.197 1.197 12 H -0.220 1.220 13 H -0.217 1.217 14 C 0.067 3.933 15 C -0.145 4.145 16 C -0.055 4.055 17 N -0.243 5.243 18 C -0.101 4.101 19 C -0.252 4.252 20 C -0.206 4.206 21 C -0.060 4.060 22 C -0.153 4.153 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.144 0.856 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.618 5.354 12.181 14.084 hybrid contribution 0.111 -0.396 -0.738 0.845 sum -4.507 4.958 11.443 13.261 Atomic orbital electron populations 1.21711 0.94665 1.01946 1.01634 1.21440 0.96664 0.96322 1.01208 1.21981 0.97872 0.96125 0.99820 1.20873 0.91374 0.85939 0.99583 1.44070 1.74718 1.11643 1.00916 1.18986 1.33722 0.94859 0.89603 0.93401 1.25722 0.97116 0.98615 1.01744 1.70123 1.36355 1.19511 1.30230 0.85559 0.77061 0.78027 0.81953 1.19651 1.22024 1.21681 1.20532 0.92677 0.92427 0.87694 1.21741 0.97990 0.98036 0.96758 1.21979 0.96031 0.91253 0.96195 1.61726 1.03219 1.20649 1.38668 1.22782 0.97215 0.99301 0.90800 1.23561 1.02743 1.02258 0.96677 1.23098 1.02463 0.92882 1.02200 1.22078 0.89515 0.98013 0.96359 1.21894 0.98975 0.97560 0.96862 0.92319 0.93475 0.91588 0.93569 0.91881 0.93290 0.94717 0.92268 0.96189 0.94274 0.93572 0.93718 0.94213 0.90297 0.94544 0.85561 0.88861 0.87427 0.86892 0.89503 0.94198 0.90287 0.92383 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.02 16 2 C -0.12 -3.85 5.93 30.59 0.18 -3.67 16 3 C -0.12 -4.67 5.54 30.59 0.17 -4.51 16 4 C 0.15 6.99 5.28 86.38 0.46 7.45 16 5 N -0.59 -29.20 2.37 -677.59 -1.60 -30.81 16 6 C -0.24 -13.14 8.01 84.03 0.67 -12.47 16 7 H 0.05 2.69 7.03 -2.91 -0.02 2.67 16 8 C -0.04 -1.96 4.96 84.86 0.42 -1.54 16 9 N -0.92 -53.84 11.48 21.65 0.25 -53.59 16 10 Si 0.94 45.53 29.60 68.60 2.03 47.56 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 C 0.17 7.22 2.70 45.07 0.12 7.34 16 15 C -0.11 -4.34 5.31 30.65 0.16 -4.18 16 16 C 0.07 2.32 5.44 86.32 0.47 2.79 16 17 N -0.52 -15.55 4.88 -871.08 -4.25 -19.79 16 18 C 0.01 0.19 6.11 44.92 0.27 0.46 16 19 C -0.21 -4.11 9.58 30.60 0.29 -3.82 16 20 C -0.17 -3.34 9.94 30.60 0.30 -3.04 16 21 C 0.07 2.02 4.12 86.33 0.36 2.37 16 22 C -0.11 -4.18 5.45 30.65 0.17 -4.01 16 23 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 3.23 5.54 -2.38 -0.01 3.22 16 31 H 0.02 0.90 7.88 -2.39 -0.02 0.88 16 32 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.05 1.85 7.77 -2.39 -0.02 1.84 16 34 H 0.04 2.10 7.48 -2.39 -0.02 2.08 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 37 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.13 2.61 8.04 -2.39 -0.02 2.59 16 39 H 0.09 1.91 5.97 -2.39 -0.01 1.90 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.09 1.89 7.23 -2.39 -0.02 1.87 16 43 H 0.04 1.11 7.12 -2.38 -0.02 1.09 16 44 H 0.08 2.13 6.43 -2.39 -0.02 2.11 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.04 1.89 7.13 -2.39 -0.02 1.87 16 Total: -1.00 -60.30 349.62 2.10 -58.20 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.91 Total: 18.27 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 4.76 Total: -19.84 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -5.60 Total: -104.19 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -60.30 2.10 -58.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256081268.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.579 kcal (2) G-P(sol) polarization free energy of solvation -60.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds