Wall clock time and date at job start Mon Mar 30 2020 01:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47273 * 2 1 4 4 N 1.46902 * 109.47093 * 174.75330 * 3 2 1 5 5 C 1.46894 * 111.00160 * 62.32879 * 4 3 2 6 6 C 1.50708 * 109.47104 * 61.43435 * 5 4 3 7 7 H 1.07995 * 119.99880 * 3.54720 * 6 5 4 8 8 C 1.37876 * 120.00023 * 183.53823 * 6 5 4 9 9 N 1.31509 * 119.99797 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99902 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47084 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47173 * 120.00280 * 10 8 6 13 13 H 1.48501 * 109.47323 * 240.00415 * 10 8 6 14 14 C 1.46906 * 110.99988 * 186.28292 * 4 3 2 15 15 C 1.53141 * 109.42773 * 57.64121 * 14 4 3 16 16 C 1.53713 * 108.88996 * 66.06372 * 15 14 4 17 17 H 1.09000 * 112.12768 * 187.72376 * 16 15 14 18 18 C 1.54612 * 107.80950 * 312.37867 * 16 15 14 19 19 C 1.54287 * 104.84166 * 88.55389 * 18 16 15 20 20 C 1.54611 * 104.84292 * 0.02562 * 19 18 16 21 21 H 1.08998 * 112.72138 * 147.14257 * 20 19 18 22 22 C 1.53137 * 109.42713 * 177.90224 * 14 4 3 23 23 N 1.48714 * 107.23911 * 64.08488 * 16 15 14 24 24 C 1.46895 * 111.00317 * 168.34586 * 23 16 15 25 25 H 1.09003 * 109.47121 * 59.99770 * 1 2 3 26 26 H 1.08998 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46918 * 300.00194 * 1 2 3 28 28 H 1.09006 * 109.46800 * 240.00474 * 2 1 3 29 29 H 1.08997 * 109.47243 * 120.00638 * 2 1 3 30 30 H 1.09000 * 109.46929 * 54.75758 * 3 2 1 31 31 H 1.09003 * 109.47571 * 294.75607 * 3 2 1 32 32 H 1.09001 * 109.47183 * 181.43601 * 5 4 3 33 33 H 1.08994 * 109.47208 * 301.43559 * 5 4 3 34 34 H 0.97006 * 119.99666 * 179.97438 * 9 8 6 35 35 H 1.08997 * 109.42811 * 297.74410 * 14 4 3 36 36 H 1.08993 * 109.56733 * 185.88832 * 15 14 4 37 37 H 1.09000 * 109.56459 * 306.24694 * 15 14 4 38 38 H 1.08993 * 110.36286 * 207.40062 * 18 16 15 39 39 H 1.09001 * 110.36465 * 329.60623 * 18 16 15 40 40 H 1.08991 * 110.36700 * 241.15811 * 19 18 16 41 41 H 1.09003 * 110.35951 * 118.84102 * 19 18 16 42 42 H 1.08995 * 109.56699 * 53.75544 * 22 14 4 43 43 H 1.09003 * 109.56621 * 174.11424 * 22 14 4 44 44 H 1.08997 * 109.47752 * 174.47056 * 24 23 16 45 45 H 1.09008 * 109.47134 * 294.46943 * 24 23 16 46 46 H 1.09008 * 109.46994 * 54.46460 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5036 1.4443 0.1267 5 6 4.1319 0.7714 -1.0180 6 6 3.7848 1.5079 -2.2862 7 1 3.2079 2.4197 -2.2404 8 6 4.2039 1.0177 -3.5048 9 7 4.9061 -0.0928 -3.5605 10 14 3.7730 1.9301 -5.0767 11 1 2.9814 3.1420 -4.7446 12 1 5.0211 2.3306 -5.7747 13 1 2.9742 1.0436 -5.9607 14 6 4.0170 2.8122 0.2800 15 6 3.3691 3.4652 1.5043 16 6 3.8384 2.7275 2.7686 17 1 3.3065 3.0608 3.6597 18 6 3.6860 1.2100 2.5146 19 6 5.0214 0.7809 1.8719 20 6 5.8596 2.0779 1.7965 21 1 6.9275 1.8967 1.9177 22 6 5.5370 2.7684 0.4611 23 7 5.3070 2.9337 2.8796 24 6 5.8012 2.5031 4.1941 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6021 1.9827 0.8393 31 1 1.7555 1.9285 -0.9332 32 1 5.2139 0.7646 -0.8863 33 1 3.7673 -0.2537 -1.0818 34 1 5.2006 -0.4379 -4.4179 35 1 3.7753 3.3921 -0.6108 36 1 3.6675 4.5120 1.5605 37 1 2.2843 3.3968 1.4233 38 1 3.5307 0.6818 3.4552 39 1 2.8569 1.0209 1.8327 40 1 4.8502 0.3809 0.8726 41 1 5.5226 0.0415 2.4966 42 1 5.9862 2.2070 -0.3581 43 1 5.9329 3.7840 0.4703 44 1 6.8888 2.5725 4.2141 45 1 5.3819 3.1457 4.9684 46 1 5.4995 1.4714 4.3756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256627568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:07 Heat of formation + Delta-G solvation = 34.889677 kcal Electronic energy + Delta-G solvation = -23035.980919 eV Core-core repulsion = 20154.341926 eV Total energy + Delta-G solvation = -2881.638993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.23026 -38.23735 -34.86512 -34.46643 -32.47748 -31.87072 -31.41334 -28.67374 -26.80952 -25.96825 -24.89027 -24.36410 -22.39409 -21.17995 -20.87770 -19.57548 -18.15009 -17.41433 -17.24614 -16.65097 -15.78070 -15.35446 -15.26513 -14.99420 -14.77004 -14.21573 -14.13566 -13.67588 -13.59630 -13.45157 -13.20662 -13.04872 -12.97175 -12.84696 -12.69045 -12.45685 -12.33691 -12.11199 -12.09632 -11.79678 -11.62753 -11.48627 -11.26525 -11.10831 -11.00675 -10.75569 -10.69020 -10.48459 -9.26797 -8.64018 -8.04236 -6.26426 1.33337 1.36435 1.45829 2.38619 3.15139 3.19573 3.40275 3.92955 3.97160 4.21307 4.25331 4.36242 4.38822 4.42354 4.49114 4.58462 4.62407 4.64830 4.72324 4.74588 4.81374 4.90366 4.97433 5.01545 5.04716 5.08392 5.20572 5.21549 5.27860 5.32712 5.33862 5.38754 5.42540 5.46367 5.49600 5.54350 5.58841 5.82758 5.87450 5.92188 6.10369 6.26467 6.36608 6.38549 6.68194 6.95973 7.43540 8.91355 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.019991 B = 0.007531 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.328858 B = 3716.892363 C = 4405.713836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C 0.052 3.948 4 N -0.502 5.502 5 C 0.195 3.805 6 C -0.542 4.542 7 H 0.050 0.950 8 C 0.015 3.985 9 N -0.924 5.924 10 Si 0.944 3.056 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.281 1.281 14 C 0.090 3.910 15 C -0.098 4.098 16 C 0.071 3.929 17 H 0.099 0.901 18 C -0.137 4.137 19 C -0.142 4.142 20 C 0.072 3.928 21 H 0.080 0.920 22 C -0.095 4.095 23 N -0.518 5.518 24 C 0.017 3.983 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.013 0.987 32 H 0.013 0.987 33 H 0.011 0.989 34 H 0.261 0.739 35 H 0.017 0.983 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.030 0.970 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.027 4.168 13.417 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.075 4.075 4 N -0.226 5.226 5 C 0.069 3.931 6 C -0.581 4.581 7 H 0.068 0.932 8 C -0.184 4.184 9 N -0.565 5.565 10 Si 0.771 3.229 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.207 1.207 14 C -0.018 4.018 15 C -0.136 4.136 16 C -0.037 4.037 17 H 0.117 0.883 18 C -0.175 4.175 19 C -0.181 4.181 20 C -0.036 4.036 21 H 0.098 0.902 22 C -0.133 4.133 23 N -0.241 5.241 24 C -0.131 4.131 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.049 0.951 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.652 4.389 13.681 14.825 hybrid contribution -0.114 -0.299 -2.143 2.167 sum -3.766 4.090 11.538 12.808 Atomic orbital electron populations 1.21670 0.94370 1.01894 1.01839 1.21439 0.96287 0.96438 1.00952 1.22147 0.89233 0.97005 0.99134 1.63674 1.04471 1.15437 1.38991 1.19503 0.93930 0.93627 0.86044 1.21996 1.33468 1.09182 0.93452 0.93186 1.25655 0.95192 0.95629 1.01966 1.70053 1.38370 1.22063 1.25999 0.85718 0.77919 0.78858 0.80434 1.19521 1.20793 1.20709 1.21427 0.94711 0.89673 0.96028 1.21809 0.99728 0.98915 0.93146 1.22967 0.88704 0.94758 0.97308 0.88255 1.23132 1.00464 0.95156 0.98767 1.23115 0.95370 0.96775 1.02867 1.22846 0.97678 0.91750 0.91372 0.90231 1.21642 0.95442 0.99948 0.96315 1.65447 1.05633 1.49755 1.03270 1.22431 1.00702 0.98888 0.91123 0.93709 0.92168 0.91190 0.94801 0.91598 0.89684 0.96863 0.96891 0.97135 0.92966 0.96538 0.91252 0.90729 0.94293 0.87338 0.88929 0.95111 0.93471 0.91904 0.91570 0.90454 0.95611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.02 16 2 C -0.11 -3.83 5.45 30.59 0.17 -3.67 16 3 C 0.05 1.86 3.28 86.30 0.28 2.14 16 4 N -0.50 -19.35 0.54 -874.97 -0.47 -19.82 16 5 C 0.20 9.58 3.05 85.56 0.26 9.84 16 6 C -0.54 -29.11 7.57 25.60 0.19 -28.92 16 7 H 0.05 2.71 5.83 -2.91 -0.02 2.69 16 8 C 0.01 0.81 5.46 84.66 0.46 1.27 16 9 N -0.92 -54.32 13.29 21.45 0.28 -54.04 16 10 Si 0.94 44.15 29.54 68.60 2.03 46.17 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 C 0.09 3.34 1.97 45.01 0.09 3.43 16 15 C -0.10 -2.88 5.17 30.88 0.16 -2.72 16 16 C 0.07 1.92 3.68 45.35 0.17 2.09 16 17 H 0.10 2.28 8.11 -2.39 -0.02 2.26 16 18 C -0.14 -4.03 5.22 31.58 0.16 -3.87 16 19 C -0.14 -4.82 5.27 31.58 0.17 -4.66 16 20 C 0.07 2.35 3.68 45.37 0.17 2.51 16 21 H 0.08 2.51 8.11 -2.39 -0.02 2.49 16 22 C -0.10 -3.54 5.17 30.90 0.16 -3.38 16 23 N -0.52 -14.63 5.29 -853.38 -4.51 -19.14 16 24 C 0.02 0.40 9.45 127.69 1.21 1.60 16 25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 1.40 6.70 -2.38 -0.02 1.38 16 29 H 0.07 2.12 7.35 -2.39 -0.02 2.10 16 30 H 0.09 2.54 5.24 -2.39 -0.01 2.53 16 31 H 0.01 0.54 6.56 -2.39 -0.02 0.53 16 32 H 0.01 0.71 5.33 -2.39 -0.01 0.70 16 33 H 0.01 0.57 6.40 -2.39 -0.02 0.56 16 34 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 35 H 0.02 0.71 6.61 -2.39 -0.02 0.70 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.07 2.01 5.91 -2.39 -0.01 2.00 16 38 H 0.04 1.06 8.01 -2.39 -0.02 1.04 16 39 H 0.11 3.39 2.63 -2.39 -0.01 3.38 16 40 H 0.09 3.75 3.55 -2.39 -0.01 3.74 16 41 H 0.03 0.99 8.10 -2.39 -0.02 0.97 16 42 H 0.05 2.05 6.00 -2.39 -0.01 2.04 16 43 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.03 0.61 6.88 -2.38 -0.02 0.59 16 Total: -1.00 -58.20 316.91 2.64 -55.56 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.96 Total: 18.61 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: 4.36 Total: -27.33 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -4.70 Total: -93.00 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -58.20 2.64 -55.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256627568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.448 kcal (2) G-P(sol) polarization free energy of solvation -58.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds