Wall clock time and date at job start Mon Mar 30 2020 00:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99919 * 2 1 4 4 H 1.48495 * 109.47528 * 269.99954 * 3 2 1 5 5 H 1.48500 * 109.46986 * 30.00518 * 3 2 1 6 6 H 1.48506 * 109.46713 * 149.99809 * 3 2 1 7 7 C 1.37875 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00274 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00034 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47507 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47428 * 180.02562 * 10 9 7 12 12 C 1.46899 * 110.99931 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.50567 * 35.07331 * 12 11 10 14 14 C 1.53124 * 109.50316 * 274.99509 * 12 11 10 15 15 C 1.53118 * 109.16485 * 182.40411 * 14 12 11 16 16 C 1.53039 * 109.27532 * 57.65250 * 15 14 12 17 17 N 1.46843 * 109.52738 * 300.82756 * 16 15 14 18 18 C 1.46899 * 110.99877 * 185.83944 * 17 16 15 19 19 C 1.54274 * 110.03018 * 181.07938 * 18 17 16 20 20 C 1.54967 * 104.15816 * 217.13684 * 19 18 17 21 21 C 1.54889 * 102.78077 * 37.88773 * 20 19 18 22 22 C 1.53876 * 110.03565 * 63.86285 * 18 17 16 23 23 C 1.46838 * 111.20163 * 61.73825 * 17 16 15 24 24 H 0.97005 * 119.99887 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47118 * 59.99632 * 9 7 2 26 26 H 1.08997 * 109.47290 * 300.00102 * 9 7 2 27 27 H 1.09005 * 109.46867 * 300.00104 * 10 9 7 28 28 H 1.09003 * 109.47136 * 59.99760 * 10 9 7 29 29 H 1.00897 * 111.00169 * 56.04568 * 11 10 9 30 30 H 1.08993 * 109.52318 * 302.31375 * 14 12 11 31 31 H 1.08998 * 109.51908 * 62.50193 * 14 12 11 32 32 H 1.08990 * 109.50662 * 177.59906 * 15 14 12 33 33 H 1.09003 * 109.49940 * 297.68045 * 15 14 12 34 34 H 1.09003 * 109.45632 * 60.84332 * 16 15 14 35 35 H 1.08997 * 109.46155 * 180.81569 * 16 15 14 36 36 H 1.08994 * 110.01784 * 302.47225 * 18 17 16 37 37 H 1.08992 * 110.48717 * 335.78019 * 19 18 17 38 38 H 1.09004 * 110.48153 * 98.42729 * 19 18 17 39 39 H 1.09005 * 110.71960 * 279.57401 * 20 19 18 40 40 H 1.09000 * 110.76302 * 156.22649 * 20 19 18 41 41 H 1.08996 * 110.48679 * 203.40825 * 21 20 19 42 42 H 1.08993 * 110.48316 * 80.75877 * 21 20 19 43 43 H 1.08999 * 110.03301 * 238.56676 * 22 18 17 44 44 H 1.09004 * 110.02854 * 0.02562 * 22 18 17 45 45 H 1.08999 * 109.46380 * 178.24533 * 23 17 16 46 46 H 1.08994 * 109.46558 * 58.27562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4905 -2.6365 -0.0009 12 6 6.0169 -4.0080 -0.0014 13 1 5.3624 -4.6488 -0.5921 14 6 6.0828 -4.5308 1.4363 15 6 6.6882 -5.9372 1.4325 16 6 8.0743 -5.8888 0.7857 17 7 7.9576 -5.3829 -0.5879 18 6 9.2482 -5.4528 -1.2861 19 6 9.1064 -4.8915 -2.7161 20 6 10.0223 -5.8017 -3.5730 21 6 9.8021 -7.1996 -2.9433 22 6 9.6907 -6.9195 -1.4303 23 6 7.4226 -4.0155 -0.6065 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8911 27 1 3.6585 -3.1502 0.8893 28 1 3.6579 -3.1506 -0.8907 29 1 5.8521 -2.1104 0.7804 30 1 6.7055 -3.8678 2.0368 31 1 5.0778 -4.5680 1.8566 32 1 6.7770 -6.2979 2.4571 33 1 6.0443 -6.6089 0.8647 34 1 8.7212 -5.2278 1.3625 35 1 8.5021 -6.8912 0.7683 36 1 10.0009 -4.8881 -0.7362 37 1 8.0727 -4.9646 -3.0539 38 1 9.4497 -3.8577 -2.7558 39 1 11.0646 -5.4963 -3.4809 40 1 9.7073 -5.7941 -4.6165 41 1 10.6529 -7.8490 -3.1493 42 1 8.8808 -7.6457 -3.3175 43 1 10.6587 -7.0663 -0.9511 44 1 8.9476 -7.5794 -0.9826 45 1 7.3771 -3.6573 -1.6350 46 1 8.0725 -3.3633 -0.0233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256903894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:34 Heat of formation + Delta-G solvation = -19.923884 kcal Electronic energy + Delta-G solvation = -20762.272013 eV Core-core repulsion = 17878.256125 eV Total energy + Delta-G solvation = -2884.015887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.83063 -37.59599 -35.32428 -33.03385 -32.18430 -30.80365 -29.08518 -27.89847 -27.30503 -24.15052 -23.55874 -22.10720 -20.61250 -20.47805 -19.80952 -19.53643 -16.87416 -16.66152 -15.92726 -15.14546 -14.74517 -14.59496 -14.42452 -14.21362 -13.78583 -13.53606 -13.29025 -13.24525 -12.98703 -12.47512 -12.43107 -11.68032 -11.57578 -11.34181 -11.30305 -11.24924 -11.15352 -11.03499 -10.97937 -10.76733 -10.72308 -10.50258 -10.45116 -10.10976 -9.77322 -9.62955 -9.20353 -8.51770 -8.36172 -7.86598 -6.02519 -4.00674 3.34305 3.40886 3.45749 3.70245 4.33601 4.46499 4.47954 4.68328 4.76726 4.85209 4.92236 5.01604 5.20131 5.25724 5.31264 5.32090 5.34412 5.44072 5.47403 5.50544 5.57889 5.62937 5.66529 5.72229 5.77422 5.85160 5.88118 5.93174 6.00941 6.01288 6.08648 6.16900 6.18112 6.25352 6.36290 6.42289 6.81046 7.02896 7.11834 7.20333 7.41686 7.64627 7.78734 7.94240 8.55507 9.01876 9.60006 11.10885 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028837 B = 0.003522 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.749046 B = 7948.252647 C = 8459.912546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.076 3.924 11 N -0.690 5.690 12 C 0.092 3.908 13 H 0.083 0.917 14 C -0.152 4.152 15 C -0.112 4.112 16 C 0.054 3.946 17 N -0.532 5.532 18 C 0.082 3.918 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.119 4.119 23 C 0.068 3.932 24 H 0.263 0.737 25 H 0.012 0.988 26 H 0.020 0.980 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.334 0.666 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.039 -13.787 -1.485 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.052 4.052 11 N -0.320 5.320 12 C -0.019 4.019 13 H 0.101 0.899 14 C -0.191 4.191 15 C -0.150 4.150 16 C -0.073 4.073 17 N -0.257 5.257 18 C -0.026 4.026 19 C -0.158 4.158 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.060 4.060 24 H 0.072 0.928 25 H 0.030 0.970 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.151 0.849 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 21.585 -13.880 -2.418 25.777 hybrid contribution 0.685 1.205 1.486 2.032 sum 22.270 -12.675 -0.932 25.642 Atomic orbital electron populations 1.69921 1.06322 1.26887 1.51233 1.25012 0.94731 0.99214 0.94518 0.86727 0.80249 0.83419 0.78560 1.20239 1.21543 1.19022 1.21078 0.89421 0.94503 1.50879 0.91117 1.19548 0.96636 0.91958 0.96642 1.21957 0.83879 0.99882 0.99469 1.60558 1.10023 1.11895 1.49510 1.21515 0.95544 0.90551 0.94297 0.89881 1.22350 1.01234 0.96819 0.98691 1.21508 0.96108 0.97453 0.99940 1.22104 0.97019 0.99789 0.88437 1.62031 1.25231 1.22925 1.15491 1.22259 0.89502 0.96071 0.94780 1.22506 1.01057 0.98526 0.93676 1.22481 0.99394 0.95203 0.99118 1.22303 1.01459 0.96982 0.95060 1.22233 1.00643 0.95937 0.96827 1.22047 0.94851 0.87446 1.01706 0.92752 0.96962 0.96129 0.95972 0.91743 0.84859 0.92410 0.91563 0.91847 0.91071 0.95337 0.90845 0.94362 0.90042 0.91828 0.91820 0.91481 0.92056 0.91377 0.92246 0.90650 0.89767 0.95347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 10 C 0.08 1.56 5.42 -3.83 -0.02 1.54 16 11 N -0.69 -11.70 6.25 -106.64 -0.67 -12.37 16 12 C 0.09 1.31 2.63 -67.63 -0.18 1.14 16 13 H 0.08 1.30 7.80 -51.93 -0.41 0.90 16 14 C -0.15 -1.94 5.25 -26.61 -0.14 -2.08 16 15 C -0.11 -1.20 6.09 -26.65 -0.16 -1.37 16 16 C 0.05 0.56 5.23 -3.83 -0.02 0.54 16 17 N -0.53 -5.99 4.42 -225.36 -1.00 -6.99 16 18 C 0.08 0.81 2.67 -66.59 -0.18 0.64 16 19 C -0.12 -1.15 5.07 -25.03 -0.13 -1.28 16 20 C -0.12 -0.99 6.91 -24.70 -0.17 -1.16 16 21 C -0.12 -0.95 6.83 -25.07 -0.17 -1.12 16 22 C -0.12 -1.00 5.88 -25.61 -0.15 -1.16 16 23 C 0.07 0.87 4.80 -3.84 -0.02 0.85 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 26 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 27 H 0.02 0.45 7.49 -51.93 -0.39 0.06 16 28 H 0.06 1.36 8.06 -51.93 -0.42 0.94 16 29 H 0.33 5.43 8.45 -39.29 -0.33 5.10 16 30 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.07 0.92 7.52 -51.93 -0.39 0.53 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.67 6.43 -51.93 -0.33 0.34 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.89 7.42 -51.93 -0.39 0.51 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.68 6.69 -51.93 -0.35 0.33 16 45 H 0.08 1.13 6.40 -51.93 -0.33 0.80 16 46 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 344.07 15.07 5.19 5.19 Total: -1.00 -30.01 344.07 -11.02 -41.02 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.76 Total: 0.53 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -1.89 Total: -17.37 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.89 Total: -46.84 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.01 -11.02 -41.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256903894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.099 kcal (2) G-P(sol) polarization free energy of solvation -30.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds