Wall clock time and date at job start Mon Mar 30 2020 00:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99919 * 2 1 4 4 H 1.48495 * 109.47528 * 269.99954 * 3 2 1 5 5 H 1.48500 * 109.46986 * 30.00518 * 3 2 1 6 6 H 1.48506 * 109.46713 * 149.99809 * 3 2 1 7 7 C 1.37875 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00274 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00034 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47507 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47428 * 180.02562 * 10 9 7 12 12 C 1.46899 * 110.99931 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.50567 * 35.07331 * 12 11 10 14 14 C 1.53124 * 109.50316 * 274.99509 * 12 11 10 15 15 C 1.53118 * 109.16485 * 182.40411 * 14 12 11 16 16 C 1.53039 * 109.27532 * 57.65250 * 15 14 12 17 17 N 1.46843 * 109.52738 * 300.82756 * 16 15 14 18 18 C 1.46899 * 110.99877 * 185.83944 * 17 16 15 19 19 C 1.54274 * 110.03018 * 181.07938 * 18 17 16 20 20 C 1.54967 * 104.15816 * 217.13684 * 19 18 17 21 21 C 1.54889 * 102.78077 * 37.88773 * 20 19 18 22 22 C 1.53876 * 110.03565 * 63.86285 * 18 17 16 23 23 C 1.46838 * 111.20163 * 61.73825 * 17 16 15 24 24 H 0.97005 * 119.99887 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47118 * 59.99632 * 9 7 2 26 26 H 1.08997 * 109.47290 * 300.00102 * 9 7 2 27 27 H 1.09005 * 109.46867 * 300.00104 * 10 9 7 28 28 H 1.09003 * 109.47136 * 59.99760 * 10 9 7 29 29 H 1.00897 * 111.00169 * 56.04568 * 11 10 9 30 30 H 1.08993 * 109.52318 * 302.31375 * 14 12 11 31 31 H 1.08998 * 109.51908 * 62.50193 * 14 12 11 32 32 H 1.08990 * 109.50662 * 177.59906 * 15 14 12 33 33 H 1.09003 * 109.49940 * 297.68045 * 15 14 12 34 34 H 1.09003 * 109.45632 * 60.84332 * 16 15 14 35 35 H 1.08997 * 109.46155 * 180.81569 * 16 15 14 36 36 H 1.08994 * 110.01784 * 302.47225 * 18 17 16 37 37 H 1.08992 * 110.48717 * 335.78019 * 19 18 17 38 38 H 1.09004 * 110.48153 * 98.42729 * 19 18 17 39 39 H 1.09005 * 110.71960 * 279.57401 * 20 19 18 40 40 H 1.09000 * 110.76302 * 156.22649 * 20 19 18 41 41 H 1.08996 * 110.48679 * 203.40825 * 21 20 19 42 42 H 1.08993 * 110.48316 * 80.75877 * 21 20 19 43 43 H 1.08999 * 110.03301 * 238.56676 * 22 18 17 44 44 H 1.09004 * 110.02854 * 0.02562 * 22 18 17 45 45 H 1.08999 * 109.46380 * 178.24533 * 23 17 16 46 46 H 1.08994 * 109.46558 * 58.27562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4905 -2.6365 -0.0009 12 6 6.0169 -4.0080 -0.0014 13 1 5.3624 -4.6488 -0.5921 14 6 6.0828 -4.5308 1.4363 15 6 6.6882 -5.9372 1.4325 16 6 8.0743 -5.8888 0.7857 17 7 7.9576 -5.3829 -0.5879 18 6 9.2482 -5.4528 -1.2861 19 6 9.1064 -4.8915 -2.7161 20 6 10.0223 -5.8017 -3.5730 21 6 9.8021 -7.1996 -2.9433 22 6 9.6907 -6.9195 -1.4303 23 6 7.4226 -4.0155 -0.6065 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8911 27 1 3.6585 -3.1502 0.8893 28 1 3.6579 -3.1506 -0.8907 29 1 5.8521 -2.1104 0.7804 30 1 6.7055 -3.8678 2.0368 31 1 5.0778 -4.5680 1.8566 32 1 6.7770 -6.2979 2.4571 33 1 6.0443 -6.6089 0.8647 34 1 8.7212 -5.2278 1.3625 35 1 8.5021 -6.8912 0.7683 36 1 10.0009 -4.8881 -0.7362 37 1 8.0727 -4.9646 -3.0539 38 1 9.4497 -3.8577 -2.7558 39 1 11.0646 -5.4963 -3.4809 40 1 9.7073 -5.7941 -4.6165 41 1 10.6529 -7.8490 -3.1493 42 1 8.8808 -7.6457 -3.3175 43 1 10.6587 -7.0663 -0.9511 44 1 8.9476 -7.5794 -0.9826 45 1 7.3771 -3.6573 -1.6350 46 1 8.0725 -3.3633 -0.0233 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256903894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:34 Heat of formation + Delta-G solvation = -39.085867 kcal Electronic energy + Delta-G solvation = -20763.102939 eV Core-core repulsion = 17878.256125 eV Total energy + Delta-G solvation = -2884.846813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 266.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73972 -38.58173 -36.64139 -34.94617 -33.30578 -32.34512 -30.14003 -29.03358 -28.17418 -25.85919 -24.57906 -23.18245 -22.37028 -21.21106 -20.88572 -20.39458 -18.96416 -17.64985 -16.81541 -16.34788 -16.26936 -15.85851 -15.50979 -15.39822 -15.13345 -14.68508 -14.50480 -14.30125 -14.15176 -14.12364 -13.51110 -13.28188 -12.98851 -12.54025 -12.39165 -12.14468 -12.10429 -11.97625 -11.95127 -11.86394 -11.74372 -11.71626 -11.60100 -11.42459 -11.39416 -11.31091 -11.15161 -10.77670 -9.32722 -9.18643 -8.30598 -6.35356 1.37212 1.38355 1.51095 2.36345 2.75530 3.04950 3.43025 3.70486 3.77039 3.83853 3.89675 4.03692 4.11352 4.28218 4.40559 4.45492 4.50076 4.51663 4.60141 4.62853 4.65289 4.66405 4.69758 4.82268 4.86086 4.92318 4.95361 5.01158 5.02314 5.06452 5.10762 5.17858 5.23944 5.27684 5.31623 5.34511 5.39624 5.49306 5.52497 5.62313 6.07055 6.22031 6.25607 6.29253 6.53141 6.73412 7.29556 8.86215 Molecular weight = 266.21amu Principal moments of inertia in cm(-1) A = 0.028837 B = 0.003522 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.749046 B = 7948.252647 C = 8459.912546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.956 3.044 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.003 4.003 10 C 0.092 3.908 11 N -0.688 5.688 12 C 0.093 3.907 13 H 0.065 0.935 14 C -0.147 4.147 15 C -0.107 4.107 16 C 0.056 3.944 17 N -0.539 5.539 18 C 0.081 3.919 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.115 4.115 23 C 0.078 3.922 24 H 0.267 0.733 25 H 0.020 0.980 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.051 0.949 29 H 0.341 0.659 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.090 0.910 36 H 0.039 0.961 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.969 -13.727 -1.161 28.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.041 4.041 10 C -0.037 4.037 11 N -0.319 5.319 12 C -0.017 4.017 13 H 0.084 0.916 14 C -0.186 4.186 15 C -0.145 4.145 16 C -0.072 4.072 17 N -0.264 5.264 18 C -0.027 4.027 19 C -0.159 4.159 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.153 4.153 23 C -0.050 4.050 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.160 0.840 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 24.540 -13.848 -2.092 28.255 hybrid contribution -0.278 1.094 1.371 1.776 sum 24.262 -12.754 -0.721 27.420 Atomic orbital electron populations 1.70071 1.08330 1.28257 1.52534 1.26020 0.95644 1.03620 0.93946 0.85573 0.79389 0.77929 0.79197 1.19268 1.20893 1.16986 1.21409 0.91977 0.93196 1.50717 0.95108 1.19429 0.93505 0.94422 0.96750 1.21593 0.86177 0.97267 0.98680 1.60456 1.07552 1.13839 1.50012 1.21512 0.96034 0.88727 0.95423 0.91619 1.22276 1.00780 0.98352 0.97237 1.21488 0.96176 0.95803 1.01074 1.22140 0.96629 1.00695 0.87714 1.62033 1.26297 1.21722 1.16392 1.22340 0.88674 0.97208 0.94514 1.22490 1.00396 0.98948 0.94081 1.22477 0.99531 0.94853 0.98967 1.22303 1.01751 0.97050 0.94570 1.22217 1.01113 0.94587 0.97337 1.21837 0.93706 0.88579 1.00879 0.92410 0.96182 0.96045 0.96510 0.92995 0.84046 0.91694 0.93028 0.90015 0.91783 0.95045 0.89196 0.94307 0.91853 0.91983 0.90771 0.91198 0.90531 0.92163 0.90863 0.91117 0.90723 0.95262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 2 C 0.00 0.27 5.47 84.65 0.46 0.73 16 3 Si 0.96 45.25 27.47 68.60 1.88 47.13 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 7 C -0.53 -31.70 9.66 25.60 0.25 -31.45 16 8 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 9 C 0.00 -0.16 4.30 29.85 0.13 -0.03 16 10 C 0.09 3.78 5.42 86.30 0.47 4.25 16 11 N -0.69 -22.86 6.25 -491.29 -3.07 -25.93 16 12 C 0.09 2.63 2.63 44.97 0.12 2.75 16 13 H 0.07 2.09 7.80 -2.39 -0.02 2.07 16 14 C -0.15 -3.60 5.25 30.68 0.16 -3.44 16 15 C -0.11 -2.12 6.09 30.65 0.19 -1.93 16 16 C 0.06 1.02 5.23 86.33 0.45 1.48 16 17 N -0.54 -11.40 4.42 -866.91 -3.83 -15.23 16 18 C 0.08 1.45 2.67 45.64 0.12 1.58 16 19 C -0.12 -2.20 5.07 31.70 0.16 -2.04 16 20 C -0.12 -1.71 6.91 31.91 0.22 -1.49 16 21 C -0.12 -1.62 6.83 31.67 0.22 -1.41 16 22 C -0.11 -1.68 5.88 31.32 0.18 -1.49 16 23 C 0.08 1.93 4.80 86.33 0.41 2.35 16 24 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 25 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 26 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 27 H 0.02 0.70 7.49 -2.38 -0.02 0.68 16 28 H 0.05 2.25 8.06 -2.39 -0.02 2.23 16 29 H 0.34 10.58 8.45 -89.70 -0.76 9.82 16 30 H 0.06 1.50 8.10 -2.39 -0.02 1.48 16 31 H 0.05 1.41 7.52 -2.39 -0.02 1.39 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 1.39 6.43 -2.39 -0.02 1.37 16 36 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 1.38 7.42 -2.39 -0.02 1.36 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 1.12 6.69 -2.39 -0.02 1.10 16 45 H 0.07 1.98 6.40 -2.39 -0.02 1.97 16 46 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -65.03 344.07 -1.07 -66.10 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.11 Total: 18.52 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 3.54 Total: -30.16 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -6.60 Total: -101.59 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.13 kcal Total: -65.03 -1.07 -66.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256903894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.013 kcal (2) G-P(sol) polarization free energy of solvation -65.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds