Wall clock time and date at job start Mon Mar 30 2020 00:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46937 * 2 1 4 4 C 1.52999 * 109.47212 * 119.99885 * 2 1 3 5 5 N 1.46899 * 109.47014 * 61.88650 * 4 2 1 6 6 C 1.46894 * 111.00063 * 71.20641 * 5 4 2 7 7 C 1.38588 * 110.99973 * 195.16504 * 5 4 2 8 8 N 1.31216 * 126.47101 * 341.46068 * 7 5 4 9 9 N 1.28525 * 109.86107 * 180.02562 * 8 7 5 10 10 C 1.30302 * 110.05175 * 0.02562 * 9 8 7 11 11 C 1.50700 * 126.34209 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47434 * 90.02394 * 11 10 9 13 13 C 1.50698 * 109.47029 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00277 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99890 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00100 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99808 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47249 * 60.00189 * 17 15 13 19 19 H 1.48502 * 109.47066 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47236 * 299.99498 * 17 15 13 21 21 N 1.36452 * 126.47633 * 161.78395 * 7 5 4 22 22 C 1.46506 * 127.13235 * 359.97438 * 21 7 5 23 23 H 1.09005 * 109.46991 * 300.00288 * 1 2 3 24 24 H 1.08993 * 109.47341 * 59.99604 * 1 2 3 25 25 H 1.09004 * 109.47247 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46805 * 240.00064 * 2 1 3 27 27 H 1.08996 * 109.47214 * 304.64408 * 3 2 1 28 28 H 1.08999 * 109.46910 * 64.64877 * 3 2 1 29 29 H 1.09002 * 109.46955 * 184.64885 * 3 2 1 30 30 H 1.09004 * 109.47377 * 301.88945 * 4 2 1 31 31 H 1.08999 * 109.47076 * 181.88317 * 4 2 1 32 32 H 1.09003 * 109.47058 * 183.52660 * 6 5 4 33 33 H 1.08999 * 109.47691 * 303.52737 * 6 5 4 34 34 H 1.09007 * 109.47257 * 63.53034 * 6 5 4 35 35 H 1.09001 * 109.47334 * 330.01511 * 11 10 9 36 36 H 1.09002 * 109.46468 * 210.02101 * 11 10 9 37 37 H 1.09000 * 109.46843 * 59.99352 * 12 11 10 38 38 H 1.09002 * 109.47054 * 299.99348 * 12 11 10 39 39 H 0.96997 * 120.00064 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.46861 * 274.37791 * 22 21 7 41 41 H 1.08998 * 109.47466 * 34.38661 * 22 21 7 42 42 H 1.09003 * 109.46673 * 154.38256 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5880 -2.1187 1.2267 6 6 2.3013 -2.8862 0.1971 7 6 1.7311 -2.7072 2.4732 8 7 2.4909 -2.2809 3.4544 9 7 2.3819 -3.0679 4.4646 10 6 1.5534 -4.0354 4.1900 11 6 1.1573 -5.1604 5.1111 12 6 -0.0715 -4.7463 5.9231 13 6 -0.4679 -5.8716 6.8436 14 1 0.0996 -6.7905 6.8488 15 6 -1.5551 -5.7282 7.6794 16 7 -2.2459 -4.6091 7.6736 17 14 -2.0460 -7.1229 8.8210 18 1 -0.9223 -7.4266 9.7431 19 1 -3.2388 -6.7210 9.6091 20 1 -2.3677 -8.3299 8.0181 21 7 1.1132 -3.8427 2.9100 22 6 0.1713 -4.6802 2.1631 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6103 1.9798 -0.8454 28 1 1.7462 1.9317 0.9287 29 1 3.1268 1.4437 -0.0833 30 1 1.6493 -0.2273 2.1390 31 1 3.1295 -0.6921 1.2663 32 1 1.9038 -3.9005 0.1594 33 1 2.1662 -2.4068 -0.7724 34 1 3.3633 -2.9211 0.4404 35 1 1.9820 -5.3833 5.7881 36 1 0.9216 -6.0465 4.5217 37 1 -0.8962 -4.5235 5.2460 38 1 0.1642 -3.8602 6.5125 39 1 -3.0109 -4.5083 8.2613 40 1 -0.8363 -4.2788 2.2710 41 1 0.4486 -4.6877 1.1090 42 1 0.2009 -5.6974 2.5537 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262902578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:45 Heat of formation + Delta-G solvation = 67.089621 kcal Electronic energy + Delta-G solvation = -20526.420576 eV Core-core repulsion = 17542.637534 eV Total energy + Delta-G solvation = -2983.783042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.56493 -38.35743 -34.93289 -34.71846 -33.62940 -31.64185 -28.83737 -27.49720 -27.23774 -27.16165 -25.37070 -24.57028 -21.89537 -20.80680 -20.14960 -19.59041 -17.01529 -16.51745 -16.13403 -16.08625 -15.24568 -14.86291 -14.51238 -14.32866 -13.78153 -13.42793 -13.12127 -13.06952 -12.86481 -12.67006 -12.38019 -12.26564 -12.04961 -11.84105 -11.32497 -11.18071 -11.11799 -11.02588 -10.96146 -10.72857 -10.68885 -10.34195 -10.00223 -9.84682 -9.70081 -9.24853 -9.17670 -8.40298 -8.01402 -6.04539 -4.09014 2.15016 2.53191 3.28825 3.31113 3.36211 3.38349 3.76598 4.41547 4.60530 4.76463 4.80499 4.82329 5.00995 5.08797 5.15816 5.27415 5.30497 5.31315 5.40662 5.50499 5.54776 5.55843 5.61695 5.68097 5.75641 5.81841 5.88294 5.95405 6.12746 6.23895 6.31351 6.36329 6.46785 6.66218 6.70986 6.96268 7.46057 7.56683 7.70238 7.92742 8.30051 8.96940 9.21196 9.55464 11.06502 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.032147 B = 0.003782 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.786206 B = 7402.457718 C = 7589.178251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.146 4.146 4 C 0.077 3.923 5 N -0.455 5.455 6 C 0.024 3.976 7 C 0.329 3.671 8 N -0.322 5.322 9 N -0.297 5.297 10 C 0.213 3.787 11 C -0.030 4.030 12 C 0.032 3.968 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.277 1.277 21 N -0.476 5.476 22 C 0.082 3.918 23 H 0.052 0.948 24 H 0.048 0.952 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.014 0.986 38 H 0.025 0.975 39 H 0.262 0.738 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.975 4.843 -19.016 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.050 4.050 5 N -0.178 5.178 6 C -0.123 4.123 7 C -0.028 4.028 8 N -0.166 5.166 9 N -0.136 5.136 10 C -0.055 4.055 11 C -0.070 4.070 12 C -0.006 4.006 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.723 3.277 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 N -0.170 5.170 22 C -0.061 4.061 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.033 0.967 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.296 5.785 -18.313 20.210 hybrid contribution -0.660 -1.474 0.040 1.615 sum 5.636 4.311 -18.273 19.603 Atomic orbital electron populations 1.21748 0.94410 1.02545 1.01095 1.21163 0.96944 0.95768 0.97270 1.21800 1.00885 0.95571 1.02173 1.22152 0.98819 0.84628 0.99448 1.58617 1.56070 1.03573 0.99585 1.22556 0.96627 0.98399 0.94755 1.22340 0.96577 0.89240 0.94642 1.74497 1.19483 1.24261 0.98392 1.74001 1.17889 1.02388 1.19288 1.25587 0.96002 1.00430 0.83465 1.20441 1.02058 0.90096 0.94424 1.19063 0.89787 0.97595 0.94173 1.21104 1.12924 1.00686 1.21659 0.92357 1.25014 0.96346 0.95773 0.97107 1.69963 1.19116 1.25190 1.38761 0.86614 0.78023 0.82236 0.80869 1.20078 1.21275 1.20227 1.46074 1.35944 1.21792 1.13188 1.22017 0.92716 0.95320 0.96069 0.92840 0.93329 0.91664 0.91214 0.92376 0.92320 0.92701 0.89587 0.92979 0.91240 0.89705 0.94281 0.89326 0.91271 0.96718 0.95629 0.92799 0.89930 0.90001 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.05 37.16 0.34 -1.00 16 2 C -0.09 -0.84 2.89 -90.62 -0.26 -1.10 16 3 C -0.15 -1.17 9.19 37.16 0.34 -0.82 16 4 C 0.08 0.92 3.86 -3.82 -0.01 0.90 16 5 N -0.45 -5.90 4.06 -182.38 -0.74 -6.64 16 6 C 0.02 0.24 9.29 60.06 0.56 0.80 16 7 C 0.33 5.62 6.86 -318.87 -2.19 3.43 16 8 N -0.32 -6.54 11.38 30.32 0.34 -6.19 16 9 N -0.30 -6.59 12.18 32.99 0.40 -6.19 16 10 C 0.21 4.31 7.32 -154.02 -1.13 3.18 16 11 C -0.03 -0.62 5.52 -27.88 -0.15 -0.78 16 12 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 13 C -0.53 -14.42 9.11 -34.44 -0.31 -14.73 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 17 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 N -0.48 -8.14 3.21 -121.45 -0.39 -8.53 16 22 C 0.08 1.04 11.08 59.85 0.66 1.70 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 26 H 0.07 0.56 6.60 -51.93 -0.34 0.21 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 1.22 7.85 -51.93 -0.41 0.82 16 31 H 0.05 0.63 8.06 -51.93 -0.42 0.21 16 32 H 0.07 0.64 6.31 -51.93 -0.33 0.31 16 33 H 0.08 0.63 6.51 -51.93 -0.34 0.30 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 36 H 0.07 1.25 7.19 -51.93 -0.37 0.88 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 0.79 6.26 -51.93 -0.32 0.47 16 42 H 0.09 1.09 7.13 -51.93 -0.37 0.72 16 LS Contribution 340.59 15.07 5.13 5.13 Total: -1.00 -32.86 340.59 -9.00 -41.86 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -7.07 Total: -3.59 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.40 Total: -6.16 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.35 Total: -53.45 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.86 -9.00 -41.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262902578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.945 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds