Wall clock time and date at job start Mon Mar 30 2020 00:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46937 * 2 1 4 4 C 1.52999 * 109.47212 * 119.99885 * 2 1 3 5 5 N 1.46899 * 109.47014 * 61.88650 * 4 2 1 6 6 C 1.46894 * 111.00063 * 71.20641 * 5 4 2 7 7 C 1.38588 * 110.99973 * 195.16504 * 5 4 2 8 8 N 1.31216 * 126.47101 * 341.46068 * 7 5 4 9 9 N 1.28525 * 109.86107 * 180.02562 * 8 7 5 10 10 C 1.30302 * 110.05175 * 0.02562 * 9 8 7 11 11 C 1.50700 * 126.34209 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47434 * 90.02394 * 11 10 9 13 13 C 1.50698 * 109.47029 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00277 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99890 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00100 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99808 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47249 * 60.00189 * 17 15 13 19 19 H 1.48502 * 109.47066 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47236 * 299.99498 * 17 15 13 21 21 N 1.36452 * 126.47633 * 161.78395 * 7 5 4 22 22 C 1.46506 * 127.13235 * 359.97438 * 21 7 5 23 23 H 1.09005 * 109.46991 * 300.00288 * 1 2 3 24 24 H 1.08993 * 109.47341 * 59.99604 * 1 2 3 25 25 H 1.09004 * 109.47247 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46805 * 240.00064 * 2 1 3 27 27 H 1.08996 * 109.47214 * 304.64408 * 3 2 1 28 28 H 1.08999 * 109.46910 * 64.64877 * 3 2 1 29 29 H 1.09002 * 109.46955 * 184.64885 * 3 2 1 30 30 H 1.09004 * 109.47377 * 301.88945 * 4 2 1 31 31 H 1.08999 * 109.47076 * 181.88317 * 4 2 1 32 32 H 1.09003 * 109.47058 * 183.52660 * 6 5 4 33 33 H 1.08999 * 109.47691 * 303.52737 * 6 5 4 34 34 H 1.09007 * 109.47257 * 63.53034 * 6 5 4 35 35 H 1.09001 * 109.47334 * 330.01511 * 11 10 9 36 36 H 1.09002 * 109.46468 * 210.02101 * 11 10 9 37 37 H 1.09000 * 109.46843 * 59.99352 * 12 11 10 38 38 H 1.09002 * 109.47054 * 299.99348 * 12 11 10 39 39 H 0.96997 * 120.00064 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.46861 * 274.37791 * 22 21 7 41 41 H 1.08998 * 109.47466 * 34.38661 * 22 21 7 42 42 H 1.09003 * 109.46673 * 154.38256 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.5880 -2.1187 1.2267 6 6 2.3013 -2.8862 0.1971 7 6 1.7311 -2.7072 2.4732 8 7 2.4909 -2.2809 3.4544 9 7 2.3819 -3.0679 4.4646 10 6 1.5534 -4.0354 4.1900 11 6 1.1573 -5.1604 5.1111 12 6 -0.0715 -4.7463 5.9231 13 6 -0.4679 -5.8716 6.8436 14 1 0.0996 -6.7905 6.8488 15 6 -1.5551 -5.7282 7.6794 16 7 -2.2459 -4.6091 7.6736 17 14 -2.0460 -7.1229 8.8210 18 1 -0.9223 -7.4266 9.7431 19 1 -3.2388 -6.7210 9.6091 20 1 -2.3677 -8.3299 8.0181 21 7 1.1132 -3.8427 2.9100 22 6 0.1713 -4.6802 2.1631 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6103 1.9798 -0.8454 28 1 1.7462 1.9317 0.9287 29 1 3.1268 1.4437 -0.0833 30 1 1.6493 -0.2273 2.1390 31 1 3.1295 -0.6921 1.2663 32 1 1.9038 -3.9005 0.1594 33 1 2.1662 -2.4068 -0.7724 34 1 3.3633 -2.9211 0.4404 35 1 1.9820 -5.3833 5.7881 36 1 0.9216 -6.0465 4.5217 37 1 -0.8962 -4.5235 5.2460 38 1 0.1642 -3.8602 6.5125 39 1 -3.0109 -4.5083 8.2613 40 1 -0.8363 -4.2788 2.2710 41 1 0.4486 -4.6877 1.1090 42 1 0.2009 -5.6974 2.5537 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262902578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:45 Heat of formation + Delta-G solvation = 48.957443 kcal Electronic energy + Delta-G solvation = -20527.206846 eV Core-core repulsion = 17542.637534 eV Total energy + Delta-G solvation = -2984.569312 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.00030 -39.36318 -36.37809 -35.97609 -35.17383 -33.49205 -30.39869 -28.69768 -28.15983 -27.94202 -27.12907 -25.72416 -23.77369 -22.03340 -21.57137 -20.61191 -18.64995 -18.08296 -17.53535 -17.27301 -16.51097 -16.25203 -15.93692 -15.33165 -14.96117 -14.86520 -14.50110 -14.33951 -14.08570 -13.83903 -13.55590 -13.29790 -13.08921 -12.83809 -12.81041 -12.73176 -12.63694 -12.51993 -12.07503 -11.92161 -11.86440 -11.77260 -11.49994 -11.47695 -11.31440 -11.09307 -10.56405 -10.54504 -9.38210 -8.19857 -6.32751 0.75545 1.26593 1.43693 1.47149 1.54689 1.77565 2.42500 2.66149 3.14283 3.49227 3.75626 3.77938 3.89116 4.01240 4.05774 4.23895 4.25841 4.38543 4.48367 4.56650 4.57853 4.66044 4.68597 4.75327 4.83356 4.86519 4.89432 4.92818 5.03891 5.06745 5.11674 5.25285 5.42624 5.44722 5.46462 5.56827 5.58815 5.69303 5.78437 6.14871 6.20081 6.83305 7.37466 7.72339 8.92117 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.032147 B = 0.003782 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.786206 B = 7402.457718 C = 7589.178251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.082 4.082 3 C -0.145 4.145 4 C 0.077 3.923 5 N -0.450 5.450 6 C 0.022 3.978 7 C 0.345 3.655 8 N -0.360 5.360 9 N -0.335 5.335 10 C 0.196 3.804 11 C -0.014 4.014 12 C 0.043 3.957 13 C -0.540 4.540 14 H 0.074 0.926 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.260 1.260 21 N -0.474 5.474 22 C 0.073 3.927 23 H 0.034 0.966 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.032 0.968 35 H 0.088 0.912 36 H 0.100 0.900 37 H -0.006 1.006 38 H -0.020 1.020 39 H 0.263 0.737 40 H 0.078 0.922 41 H 0.118 0.882 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.003 3.349 -21.341 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 C -0.203 4.203 4 C -0.050 4.050 5 N -0.174 5.174 6 C -0.124 4.124 7 C -0.012 4.012 8 N -0.204 5.204 9 N -0.174 5.174 10 C -0.073 4.073 11 C -0.053 4.053 12 C 0.005 3.995 13 C -0.578 4.578 14 H 0.092 0.908 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.192 1.192 19 H -0.214 1.214 20 H -0.184 1.184 21 N -0.168 5.168 22 C -0.068 4.068 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.118 0.882 37 H 0.012 0.988 38 H -0.002 1.002 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.334 4.275 -20.670 22.038 hybrid contribution -0.682 -0.915 0.655 1.315 sum 5.652 3.360 -20.016 21.068 Atomic orbital electron populations 1.21735 0.94709 1.02026 1.01167 1.21142 0.96524 0.96217 0.96236 1.21801 1.01419 0.94823 1.02270 1.22199 0.98619 0.84214 0.99933 1.58888 1.56355 1.04114 0.98092 1.22734 0.95911 0.99049 0.94753 1.22826 0.94641 0.88314 0.95414 1.74399 1.21737 1.25151 0.99143 1.73881 1.19369 1.03358 1.20770 1.25364 0.96776 1.00294 0.84884 1.20144 0.99522 0.91254 0.94395 1.18829 0.91351 0.95627 0.93732 1.21576 1.13012 1.01473 1.21752 0.90775 1.26022 0.96380 0.98460 0.98934 1.70124 1.19800 1.27664 1.39942 0.85434 0.77575 0.79047 0.78595 1.19247 1.21360 1.18413 1.46241 1.36024 1.22128 1.12359 1.22380 0.91657 0.95082 0.97675 0.94661 0.91389 0.92446 0.88926 0.90704 0.93561 0.92044 0.92690 0.93205 0.90010 0.86442 0.94886 0.89371 0.88216 0.98778 1.00173 0.92810 0.90290 0.86405 0.87757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.05 71.98 0.65 -1.76 16 2 C -0.08 -1.32 2.89 -10.79 -0.03 -1.35 16 3 C -0.15 -2.06 9.19 71.98 0.66 -1.39 16 4 C 0.08 1.81 3.86 86.30 0.33 2.15 16 5 N -0.45 -11.05 4.06 -730.92 -2.96 -14.01 16 6 C 0.02 0.37 9.29 127.69 1.19 1.55 16 7 C 0.35 11.75 6.86 260.11 1.78 13.54 16 8 N -0.36 -15.07 11.38 -58.00 -0.66 -15.73 16 9 N -0.33 -15.43 12.18 -49.54 -0.60 -16.03 16 10 C 0.20 8.08 7.32 137.64 1.01 9.09 16 11 C -0.01 -0.56 5.52 29.85 0.16 -0.39 16 12 C 0.04 2.28 4.96 29.85 0.15 2.42 16 13 C -0.54 -29.77 9.11 25.60 0.23 -29.54 16 14 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 15 C 0.00 0.00 5.46 84.66 0.46 0.46 16 16 N -0.94 -57.24 13.29 21.45 0.28 -56.96 16 17 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 18 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 21 N -0.47 -15.96 3.21 -538.17 -1.73 -17.69 16 22 C 0.07 1.71 11.08 127.77 1.42 3.12 16 23 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 1.08 7.66 -2.39 -0.02 1.07 16 26 H 0.09 1.11 6.60 -2.39 -0.02 1.09 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 1.63 7.85 -2.38 -0.02 1.61 16 31 H 0.05 1.19 8.06 -2.39 -0.02 1.17 16 32 H 0.08 1.19 6.31 -2.39 -0.02 1.17 16 33 H 0.12 1.23 6.51 -2.39 -0.02 1.22 16 34 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 36 H 0.10 3.46 7.19 -2.39 -0.02 3.44 16 37 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 39 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.12 1.87 6.26 -2.39 -0.01 1.85 16 42 H 0.10 2.20 7.13 -2.39 -0.02 2.18 16 Total: -1.00 -74.21 340.59 5.36 -68.86 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.98 Total: 8.32 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 8.02 Total: -2.11 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -5.67 Total: -120.42 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -74.21 5.36 -68.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262902578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.813 kcal (2) G-P(sol) polarization free energy of solvation -74.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds