Wall clock time and date at job start Mon Mar 30 2020 00:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46945 * 2 1 4 4 N 1.46899 * 109.47181 * 180.02562 * 3 2 1 5 5 C 1.46897 * 110.99840 * 293.95501 * 4 3 2 6 6 C 1.38577 * 110.99865 * 170.00080 * 4 3 2 7 7 N 1.31213 * 126.47657 * 55.78565 * 6 4 3 8 8 N 1.28530 * 109.86382 * 179.97438 * 7 6 4 9 9 C 1.30292 * 110.05026 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.34553 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46991 * 89.97540 * 10 9 8 12 12 C 1.50700 * 109.46991 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00190 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99937 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00200 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00160 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46912 * 60.00029 * 16 14 12 18 18 H 1.48501 * 109.47542 * 180.02562 * 16 14 12 19 19 H 1.48511 * 109.46984 * 300.00595 * 16 14 12 20 20 N 1.36459 * 126.47199 * 235.46972 * 6 4 3 21 21 C 1.46501 * 127.13495 * 0.03745 * 20 6 4 22 22 C 1.53000 * 109.46903 * 93.74657 * 21 20 6 23 23 H 1.09004 * 109.46448 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47149 * 299.99555 * 1 2 3 25 25 H 1.09000 * 109.47150 * 60.00122 * 1 2 3 26 26 H 1.08995 * 109.47550 * 120.00076 * 2 1 3 27 27 H 1.08999 * 109.46903 * 240.00062 * 2 1 3 28 28 H 1.09003 * 109.46938 * 300.00664 * 3 2 1 29 29 H 1.08993 * 109.46834 * 60.00252 * 3 2 1 30 30 H 1.08999 * 109.47120 * 66.74627 * 5 4 3 31 31 H 1.08998 * 109.46867 * 186.74279 * 5 4 3 32 32 H 1.08993 * 109.47489 * 306.73940 * 5 4 3 33 33 H 1.09004 * 109.47369 * 209.97731 * 10 9 8 34 34 H 1.09004 * 109.47083 * 329.97840 * 10 9 8 35 35 H 1.08996 * 109.47461 * 300.00042 * 11 10 9 36 36 H 1.08996 * 109.47296 * 60.00229 * 11 10 9 37 37 H 0.96998 * 120.00713 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.46889 * 213.74595 * 21 20 6 39 39 H 1.08998 * 109.47098 * 333.74242 * 21 20 6 40 40 H 1.08995 * 109.46916 * 299.99445 * 22 21 20 41 41 H 1.08998 * 109.47582 * 59.99882 * 22 21 20 42 42 H 1.09000 * 109.46581 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0360 0.8856 1.2524 6 6 4.0055 2.7167 -0.2253 7 7 3.7314 3.7947 0.4709 8 7 4.3658 4.8014 -0.0150 9 6 5.0768 4.4284 -1.0411 10 6 5.9607 5.3115 -1.8837 11 6 7.3728 5.3300 -1.2951 12 6 8.2569 6.2126 -2.1380 13 1 7.8519 6.7108 -3.0064 14 6 9.5824 6.3849 -1.8000 15 7 10.0754 5.7786 -0.7422 16 14 10.6781 7.4794 -2.8444 17 1 10.1293 8.8593 -2.8592 18 1 12.0487 7.4974 -2.2732 19 1 10.7272 6.9514 -4.2316 20 7 4.8764 3.0862 -1.2087 21 6 5.4710 2.2242 -2.2332 22 6 4.6170 2.2759 -3.5016 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8935 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.7874 -0.1740 1.3118 31 1 5.1189 1.0067 1.2767 32 1 3.5927 1.4108 2.0983 33 1 5.9965 4.9241 -2.9020 34 1 5.5581 6.3244 -1.8942 35 1 7.3370 5.7173 -0.2769 36 1 7.7754 4.3172 -1.2845 37 1 11.0080 5.8995 -0.5045 38 1 6.4792 2.5712 -2.4595 39 1 5.5137 1.1990 -1.8654 40 1 3.6089 1.9289 -3.2752 41 1 4.5743 3.3011 -3.8694 42 1 5.0592 1.6342 -4.2637 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263041917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:58 Heat of formation + Delta-G solvation = 63.061049 kcal Electronic energy + Delta-G solvation = -20626.397606 eV Core-core repulsion = 17642.439872 eV Total energy + Delta-G solvation = -2983.957734 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57068 -37.94955 -35.47377 -34.10303 -33.33641 -31.67662 -30.28349 -28.67275 -27.25693 -25.64184 -24.76091 -23.75340 -21.92113 -21.37245 -20.25080 -19.83666 -16.99277 -16.47992 -16.25273 -15.95554 -15.26309 -14.77460 -14.46663 -14.35931 -13.93333 -13.27871 -13.16879 -13.10172 -12.95148 -12.37467 -12.32215 -12.21398 -12.12644 -11.79062 -11.36051 -11.33359 -11.23303 -11.03559 -10.98158 -10.83508 -10.70170 -10.35781 -9.95590 -9.86314 -9.70324 -9.24748 -8.78963 -8.41517 -8.38139 -6.05824 -4.10195 2.12059 2.55008 3.28464 3.30530 3.35577 3.37899 3.77804 4.40686 4.67595 4.78043 4.84230 4.97981 5.04071 5.06425 5.13982 5.29013 5.29943 5.32909 5.37871 5.47684 5.51539 5.55801 5.64537 5.68421 5.73897 5.80993 5.88533 5.92148 6.04282 6.09004 6.36027 6.38900 6.48488 6.64353 6.70061 6.97966 7.50594 7.54673 7.68478 7.91378 8.28880 8.95710 9.18947 9.54422 11.05266 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.036282 B = 0.003928 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.543222 B = 7126.278638 C = 7299.813575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.069 3.931 4 N -0.464 5.464 5 C 0.033 3.967 6 C 0.319 3.681 7 N -0.315 5.315 8 N -0.299 5.299 9 C 0.217 3.783 10 C -0.032 4.032 11 C 0.032 3.968 12 C -0.525 4.525 13 H 0.059 0.941 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.895 3.105 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 N -0.462 5.462 21 C 0.107 3.893 22 C -0.163 4.163 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.025 0.975 36 H 0.014 0.986 37 H 0.262 0.738 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.422 -13.787 -2.168 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.058 4.058 4 N -0.189 5.189 5 C -0.114 4.114 6 C -0.038 4.038 7 N -0.159 5.159 8 N -0.139 5.139 9 C -0.050 4.050 10 C -0.072 4.072 11 C -0.006 4.006 12 C -0.563 4.563 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.155 5.155 21 C -0.016 4.016 22 C -0.221 4.221 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.044 0.956 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.699 -13.247 -1.394 19.837 hybrid contribution 1.082 0.103 -0.828 1.366 sum -13.618 -13.144 -2.222 19.056 Atomic orbital electron populations 1.21722 0.95290 1.01786 1.02052 1.21549 0.95654 0.95790 1.02807 1.22193 0.83905 0.97519 1.02231 1.58618 1.09295 1.14339 1.36686 1.22456 1.00708 0.99859 0.88423 1.22161 0.97302 0.92505 0.91803 1.74475 1.21806 0.96087 1.23532 1.74040 1.09950 1.21297 1.08643 1.25619 0.99700 0.81650 0.98075 1.20462 0.95359 0.95970 0.95407 1.19062 0.87125 0.97371 0.97028 1.21102 0.94624 1.28936 1.11656 0.92324 1.25009 0.98164 0.95877 0.95176 1.69956 1.14603 1.42999 1.25543 0.86615 0.79557 0.81193 0.80391 1.20068 1.21279 1.20196 1.46398 1.34998 1.09320 1.24803 1.21832 0.98114 0.94816 0.86845 1.22094 1.00267 1.03177 0.96589 0.92404 0.92605 0.92632 0.91625 0.91123 0.90873 0.92916 0.90142 0.91278 0.93749 0.91143 0.89307 0.95647 0.96801 0.92793 0.88085 0.88587 0.92195 0.91775 0.90488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.00 5.86 -26.73 -0.16 -1.15 16 3 C 0.07 0.78 4.82 -3.82 -0.02 0.77 16 4 N -0.46 -6.17 4.77 -182.39 -0.87 -7.04 16 5 C 0.03 0.39 9.17 60.06 0.55 0.94 16 6 C 0.32 5.49 6.39 -318.88 -2.04 3.45 16 7 N -0.31 -6.41 12.12 30.31 0.37 -6.05 16 8 N -0.30 -6.64 12.18 32.99 0.40 -6.24 16 9 C 0.22 4.40 7.32 -154.02 -1.13 3.27 16 10 C -0.03 -0.66 5.43 -27.88 -0.15 -0.81 16 11 C 0.03 0.82 4.96 -27.88 -0.14 0.69 16 12 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -26.53 13.28 55.43 0.74 -25.79 16 16 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 N -0.46 -7.99 2.81 -114.09 -0.32 -8.31 16 21 C 0.11 1.44 6.58 -4.04 -0.03 1.42 16 22 C -0.16 -1.82 10.24 37.16 0.38 -1.44 16 23 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.51 6.70 -51.93 -0.35 0.16 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 29 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 30 H 0.08 0.71 6.80 -51.93 -0.35 0.35 16 31 H 0.07 0.89 8.05 -51.93 -0.42 0.47 16 32 H 0.04 0.55 8.05 -51.93 -0.42 0.13 16 33 H 0.07 1.29 7.85 -51.93 -0.41 0.88 16 34 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.10 1.45 8.03 -51.93 -0.42 1.03 16 39 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.77 8.01 -51.93 -0.42 0.36 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 348.33 15.07 5.25 5.25 Total: -1.00 -32.29 348.33 -9.61 -41.90 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -7.38 Total: -3.20 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.77 Total: -6.67 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 0.31 Total: -53.43 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.29 -9.61 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263041917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.957 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds