Wall clock time and date at job start Mon Mar 30 2020 00:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46945 * 2 1 4 4 N 1.46899 * 109.47181 * 180.02562 * 3 2 1 5 5 C 1.46897 * 110.99840 * 293.95501 * 4 3 2 6 6 C 1.38577 * 110.99865 * 170.00080 * 4 3 2 7 7 N 1.31213 * 126.47657 * 55.78565 * 6 4 3 8 8 N 1.28530 * 109.86382 * 179.97438 * 7 6 4 9 9 C 1.30292 * 110.05026 * 359.97438 * 8 7 6 10 10 C 1.50700 * 126.34553 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46991 * 89.97540 * 10 9 8 12 12 C 1.50700 * 109.46991 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00190 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99937 * 179.97438 * 12 11 10 15 15 N 1.31507 * 120.00200 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00160 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46912 * 60.00029 * 16 14 12 18 18 H 1.48501 * 109.47542 * 180.02562 * 16 14 12 19 19 H 1.48511 * 109.46984 * 300.00595 * 16 14 12 20 20 N 1.36459 * 126.47199 * 235.46972 * 6 4 3 21 21 C 1.46501 * 127.13495 * 0.03745 * 20 6 4 22 22 C 1.53000 * 109.46903 * 93.74657 * 21 20 6 23 23 H 1.09004 * 109.46448 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47149 * 299.99555 * 1 2 3 25 25 H 1.09000 * 109.47150 * 60.00122 * 1 2 3 26 26 H 1.08995 * 109.47550 * 120.00076 * 2 1 3 27 27 H 1.08999 * 109.46903 * 240.00062 * 2 1 3 28 28 H 1.09003 * 109.46938 * 300.00664 * 3 2 1 29 29 H 1.08993 * 109.46834 * 60.00252 * 3 2 1 30 30 H 1.08999 * 109.47120 * 66.74627 * 5 4 3 31 31 H 1.08998 * 109.46867 * 186.74279 * 5 4 3 32 32 H 1.08993 * 109.47489 * 306.73940 * 5 4 3 33 33 H 1.09004 * 109.47369 * 209.97731 * 10 9 8 34 34 H 1.09004 * 109.47083 * 329.97840 * 10 9 8 35 35 H 1.08996 * 109.47461 * 300.00042 * 11 10 9 36 36 H 1.08996 * 109.47296 * 60.00229 * 11 10 9 37 37 H 0.96998 * 120.00713 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.46889 * 213.74595 * 21 20 6 39 39 H 1.08998 * 109.47098 * 333.74242 * 21 20 6 40 40 H 1.08995 * 109.46916 * 299.99445 * 22 21 20 41 41 H 1.08998 * 109.47582 * 59.99882 * 22 21 20 42 42 H 1.09000 * 109.46581 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 -0.0006 5 6 4.0360 0.8856 1.2524 6 6 4.0055 2.7167 -0.2253 7 7 3.7314 3.7947 0.4709 8 7 4.3658 4.8014 -0.0150 9 6 5.0768 4.4284 -1.0411 10 6 5.9607 5.3115 -1.8837 11 6 7.3728 5.3300 -1.2951 12 6 8.2569 6.2126 -2.1380 13 1 7.8519 6.7108 -3.0064 14 6 9.5824 6.3849 -1.8000 15 7 10.0754 5.7786 -0.7422 16 14 10.6781 7.4794 -2.8444 17 1 10.1293 8.8593 -2.8592 18 1 12.0487 7.4974 -2.2732 19 1 10.7272 6.9514 -4.2316 20 7 4.8764 3.0862 -1.2087 21 6 5.4710 2.2242 -2.2332 22 6 4.6170 2.2759 -3.5016 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8935 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.7874 -0.1740 1.3118 31 1 5.1189 1.0067 1.2767 32 1 3.5927 1.4108 2.0983 33 1 5.9965 4.9241 -2.9020 34 1 5.5581 6.3244 -1.8942 35 1 7.3370 5.7173 -0.2769 36 1 7.7754 4.3172 -1.2845 37 1 11.0080 5.8995 -0.5045 38 1 6.4792 2.5712 -2.4595 39 1 5.5137 1.1990 -1.8654 40 1 3.6089 1.9289 -3.2752 41 1 4.5743 3.3011 -3.8694 42 1 5.0592 1.6342 -4.2637 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263041917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:57 Heat of formation + Delta-G solvation = 45.422458 kcal Electronic energy + Delta-G solvation = -20627.162473 eV Core-core repulsion = 17642.439872 eV Total energy + Delta-G solvation = -2984.722601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.180 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.03662 -39.01210 -36.83753 -35.89955 -34.35579 -33.46004 -31.46115 -30.30738 -28.19579 -27.32499 -26.00783 -24.92719 -23.65542 -22.43670 -21.45216 -21.32638 -18.61535 -18.13575 -17.57441 -17.14786 -16.52063 -16.28406 -15.79300 -15.59723 -15.05596 -14.80465 -14.55709 -14.29842 -14.02448 -13.91537 -13.43347 -13.20334 -13.11409 -12.92929 -12.81986 -12.71176 -12.57265 -12.42050 -12.32268 -12.10016 -12.03253 -11.77612 -11.55902 -11.49986 -11.33188 -11.10534 -10.56898 -10.05281 -9.87886 -8.20551 -6.33227 0.69681 1.25029 1.43485 1.46783 1.54320 1.73282 2.42116 2.65722 3.13687 3.45465 3.68052 3.82992 3.98819 4.05686 4.06684 4.13735 4.31026 4.35204 4.41836 4.53401 4.58029 4.62519 4.64857 4.69463 4.75572 4.79574 4.84564 4.90432 4.96195 5.14758 5.17919 5.19162 5.26583 5.40274 5.43191 5.56417 5.57399 5.66193 5.77551 6.14664 6.21158 6.82379 7.36949 7.67018 8.91449 Molecular weight = 266.18amu Principal moments of inertia in cm(-1) A = 0.036282 B = 0.003928 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.543222 B = 7126.278638 C = 7299.813575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C 0.069 3.931 4 N -0.457 5.457 5 C 0.033 3.967 6 C 0.336 3.664 7 N -0.350 5.350 8 N -0.336 5.336 9 C 0.201 3.799 10 C -0.015 4.015 11 C 0.044 3.956 12 C -0.540 4.540 13 H 0.073 0.927 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.268 1.268 18 H -0.287 1.287 19 H -0.260 1.260 20 N -0.459 5.459 21 C 0.099 3.901 22 C -0.154 4.154 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.119 0.881 31 H 0.054 0.946 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.088 0.912 35 H -0.019 1.019 36 H -0.006 1.006 37 H 0.264 0.736 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.004 -15.322 -3.970 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.057 4.057 4 N -0.183 5.183 5 C -0.114 4.114 6 C -0.021 4.021 7 N -0.193 5.193 8 N -0.176 5.176 9 C -0.067 4.067 10 C -0.055 4.055 11 C 0.006 3.994 12 C -0.578 4.578 13 H 0.091 0.909 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.793 3.207 17 H -0.193 1.193 18 H -0.213 1.213 19 H -0.184 1.184 20 N -0.151 5.151 21 C -0.022 4.022 22 C -0.212 4.212 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.137 0.863 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.000 1.000 36 H 0.013 0.987 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.300 -14.796 -3.216 21.526 hybrid contribution 1.212 0.476 -0.211 1.320 sum -14.088 -14.319 -3.427 20.378 Atomic orbital electron populations 1.21719 0.94341 1.02762 1.01880 1.21506 0.96328 0.93259 1.03658 1.22288 0.82469 0.99776 1.01198 1.58967 1.10413 1.11510 1.37375 1.22554 0.99734 1.01856 0.87275 1.22645 0.95746 0.93280 0.90453 1.74390 1.23170 0.96836 1.24946 1.73926 1.11078 1.22921 1.09628 1.25384 1.00169 0.83063 0.98118 1.20165 0.92397 0.96562 0.96360 1.18822 0.90091 0.95649 0.94857 1.21561 0.95161 1.28980 1.12114 0.90876 1.26000 0.99953 0.97334 0.96394 1.70111 1.15039 1.44779 1.27547 0.85449 0.77070 0.79191 0.79040 1.19273 1.21302 1.18437 1.46610 1.34600 1.08627 1.25312 1.22167 0.97945 0.94908 0.87185 1.22054 1.00070 1.03276 0.95764 0.90815 0.92867 0.92819 0.90507 0.90425 0.91816 0.94153 0.86301 0.92659 0.94584 0.88522 0.89351 1.00013 0.98716 0.92770 0.89091 0.86668 0.91955 0.92775 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.06 16 2 C -0.11 -1.52 5.86 30.60 0.18 -1.34 16 3 C 0.07 1.49 4.82 86.30 0.42 1.91 16 4 N -0.46 -11.54 4.77 -730.95 -3.49 -15.03 16 5 C 0.03 0.72 9.17 127.69 1.17 1.89 16 6 C 0.34 11.55 6.39 260.11 1.66 13.21 16 7 N -0.35 -14.62 12.12 -58.01 -0.70 -15.32 16 8 N -0.34 -15.43 12.18 -49.54 -0.60 -16.03 16 9 C 0.20 8.36 7.32 137.64 1.01 9.37 16 10 C -0.02 -0.63 5.43 29.85 0.16 -0.47 16 11 C 0.04 2.33 4.96 29.85 0.15 2.47 16 12 C -0.54 -29.72 9.11 25.60 0.23 -29.49 16 13 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 14 C 0.00 0.07 5.46 84.66 0.46 0.53 16 15 N -0.93 -56.81 13.28 21.45 0.28 -56.53 16 16 Si 0.97 43.20 29.54 68.60 2.03 45.22 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 20 N -0.46 -15.82 2.81 -514.86 -1.45 -17.26 16 21 C 0.10 2.55 6.58 86.38 0.57 3.12 16 22 C -0.15 -3.06 10.24 71.98 0.74 -2.33 16 23 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 24 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.08 0.92 6.70 -2.39 -0.02 0.90 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.49 8.05 -2.39 -0.02 1.47 16 29 H 0.04 0.98 8.05 -2.39 -0.02 0.96 16 30 H 0.12 1.72 6.80 -2.39 -0.02 1.70 16 31 H 0.05 1.38 8.05 -2.39 -0.02 1.36 16 32 H 0.04 0.86 8.05 -2.39 -0.02 0.84 16 33 H 0.10 3.48 7.85 -2.39 -0.02 3.46 16 34 H 0.09 3.67 8.14 -2.38 -0.02 3.65 16 35 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 36 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.09 2.55 8.03 -2.39 -0.02 2.53 16 39 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.05 1.20 8.01 -2.39 -0.02 1.18 16 42 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -71.91 348.33 4.50 -67.41 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.97 Total: 9.74 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 7.46 Total: -2.19 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -5.96 Total: -120.18 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -71.91 4.50 -67.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263041917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.831 kcal (2) G-P(sol) polarization free energy of solvation -71.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds