Wall clock time and date at job start Mon Mar 30 2020 00:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36932 * 120.00149 * 2 1 4 4 H 1.08002 * 120.00675 * 202.34787 * 3 2 1 5 5 C 1.38810 * 119.99607 * 22.35600 * 3 2 1 6 6 N 1.31614 * 120.00688 * 11.33798 * 5 3 2 7 7 Si 1.86809 * 119.99936 * 191.33952 * 5 3 2 8 8 H 1.48498 * 109.46999 * 89.99705 * 7 5 3 9 9 H 1.48492 * 109.47340 * 209.99755 * 7 5 3 10 10 H 1.48493 * 109.46986 * 330.00216 * 7 5 3 11 11 C 1.46509 * 119.99947 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.46899 * 269.99450 * 11 2 1 13 13 N 1.46499 * 109.47117 * 179.97438 * 12 11 2 14 14 C 1.34780 * 120.00448 * 179.97438 * 13 12 11 15 15 O 1.21285 * 119.99334 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00251 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.46832 * 180.02562 * 16 14 13 18 18 H 1.08996 * 109.36038 * 55.27735 * 17 16 14 19 19 C 1.50065 * 109.35880 * 295.68569 * 17 16 14 20 20 C 1.29448 * 124.07834 * 222.66499 * 19 17 16 21 21 C 1.50063 * 124.07256 * 0.46990 * 20 19 17 22 22 C 1.53014 * 110.14885 * 342.87018 * 21 20 19 23 23 C 1.53032 * 109.35667 * 175.00220 * 17 16 14 24 24 H 1.09001 * 109.46780 * 274.20598 * 1 2 3 25 25 H 1.08998 * 109.47631 * 34.20188 * 1 2 3 26 26 H 1.09002 * 109.47194 * 154.20927 * 1 2 3 27 27 H 0.96997 * 120.00870 * 180.02562 * 6 5 3 28 28 H 1.09004 * 109.46859 * 149.99577 * 11 2 1 29 29 H 1.08997 * 109.46864 * 29.99758 * 11 2 1 30 30 H 1.09004 * 109.47262 * 60.00373 * 12 11 2 31 31 H 1.08997 * 109.47614 * 299.99849 * 12 11 2 32 32 H 0.97005 * 119.99910 * 0.02562 * 13 12 11 33 33 H 1.08997 * 109.46868 * 300.00464 * 16 14 13 34 34 H 1.08994 * 109.46984 * 60.00307 * 16 14 13 35 35 H 1.08004 * 117.95882 * 42.64338 * 19 17 16 36 36 H 1.08003 * 117.95952 * 180.44701 * 20 19 17 37 37 H 1.09000 * 109.35360 * 222.65660 * 21 20 19 38 38 H 1.09002 * 109.35807 * 103.07918 * 21 20 19 39 39 H 1.08998 * 109.64337 * 289.75000 * 22 21 20 40 40 H 1.09002 * 109.81894 * 169.22695 * 22 21 20 41 41 H 1.09000 * 109.64022 * 289.32867 * 23 17 16 42 42 H 1.08997 * 109.64205 * 49.74263 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5338 2.3428 0.4573 6 7 0.3842 2.2690 1.0938 7 14 2.3367 4.0047 0.1691 8 1 1.8679 4.5633 -1.1245 9 1 1.9682 4.9301 1.2704 10 1 3.8122 3.8418 0.1322 11 6 2.1975 -1.2688 -0.0006 12 6 2.4526 -1.7110 1.4417 13 7 3.1845 -2.9800 1.4412 14 6 3.5219 -3.5639 2.6081 15 8 3.2191 -3.0389 3.6587 16 6 4.2754 -4.8691 2.6075 17 6 4.5303 -5.3113 4.0498 18 1 3.5825 -5.3601 4.5857 19 6 5.4290 -4.3162 4.7238 20 6 6.4181 -4.6376 5.4945 21 6 6.8107 -6.0504 5.8136 22 6 5.6657 -7.0058 5.4708 23 6 5.1839 -6.6950 4.0481 24 1 -0.3633 0.0754 1.0249 25 1 -0.3634 0.8499 -0.5776 26 1 -0.3634 -0.9253 -0.4471 27 1 -0.0463 3.0774 1.4130 28 1 3.1499 -1.1382 -0.5144 29 1 1.6084 -2.0282 -0.5147 30 1 1.5002 -1.8416 1.9555 31 1 3.0417 -0.9516 1.9558 32 1 3.4270 -3.3997 0.6009 33 1 3.6861 -5.6285 2.0937 34 1 5.2276 -4.7386 2.0934 35 1 5.2388 -3.2665 4.5550 36 1 6.9971 -3.8392 5.9349 37 1 7.0419 -6.1298 6.8758 38 1 7.6927 -6.3203 5.2328 39 1 4.8459 -6.8627 6.1747 40 1 6.0166 -8.0365 5.5218 41 1 4.4558 -7.4437 3.7360 42 1 6.0308 -6.6993 3.3619 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267203078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:00 Heat of formation + Delta-G solvation = -19.027954 kcal Electronic energy + Delta-G solvation = -19987.397143 eV Core-core repulsion = 16967.587012 eV Total energy + Delta-G solvation = -3019.810132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.82235 -38.18431 -36.01599 -34.07207 -32.73963 -31.28843 -31.06845 -28.62334 -26.82084 -25.84247 -23.40324 -22.42528 -21.97976 -20.63007 -19.86973 -18.01108 -16.90307 -16.61699 -16.09551 -15.50578 -15.26692 -14.72800 -14.31929 -14.07675 -13.87060 -13.39993 -13.18650 -12.95238 -12.76459 -12.41510 -12.34351 -12.18314 -12.14861 -11.54515 -11.19450 -11.00812 -10.87644 -10.83809 -10.65033 -10.57948 -10.26965 -10.19771 -9.98814 -9.88920 -9.41707 -8.97861 -8.60248 -8.53455 -6.82124 -5.74136 -3.21582 2.35082 2.96346 3.37988 3.44019 3.46218 3.55357 4.49454 4.57697 4.59977 4.68893 4.95022 5.05460 5.18260 5.33884 5.34799 5.41117 5.45743 5.55766 5.56589 5.63709 5.67586 5.75777 5.79093 5.89078 5.95131 6.01014 6.21378 6.26979 6.28721 6.70124 6.72390 6.74433 6.79429 6.98062 7.03087 7.36808 7.71955 7.80153 7.87713 8.37199 8.58982 9.21231 9.83279 10.31416 11.30911 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032008 B = 0.003335 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.572116 B = 8393.300495 C = 8878.717281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.597 5.597 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.728 5.728 14 C 0.503 3.497 15 O -0.540 6.540 16 C -0.134 4.134 17 C -0.044 4.044 18 H 0.087 0.913 19 C -0.131 4.131 20 C -0.176 4.176 21 C -0.088 4.088 22 C -0.120 4.120 23 C -0.116 4.116 24 H 0.029 0.971 25 H 0.047 0.953 26 H -0.003 1.003 27 H 0.254 0.746 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.394 0.606 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.855 -19.046 3.232 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.320 5.320 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.031 4.031 13 N -0.379 5.379 14 C 0.289 3.711 15 O -0.418 6.418 16 C -0.174 4.174 17 C -0.062 4.062 18 H 0.105 0.895 19 C -0.149 4.149 20 C -0.194 4.194 21 C -0.125 4.125 22 C -0.157 4.157 23 C -0.153 4.153 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.016 0.984 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.227 0.773 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.488 -18.468 4.040 21.152 hybrid contribution 0.456 0.950 -0.361 1.114 sum 9.944 -17.518 3.678 20.477 Atomic orbital electron populations 1.20847 0.82170 0.95726 0.99475 1.43925 1.02067 1.00374 1.85609 1.19230 0.98150 0.85249 1.36353 0.91213 1.25070 0.97672 0.98695 0.98097 1.70064 1.17799 1.27230 1.39957 0.86210 0.78839 0.83888 0.77327 1.21430 1.21661 1.20448 1.20988 0.96281 0.88878 0.92269 1.22478 0.95711 0.82982 1.01950 1.46245 1.58379 1.25294 1.07964 1.20657 0.79748 0.86573 0.84113 1.90706 1.54611 1.65266 1.31202 1.21716 1.01304 0.95676 0.98707 1.19835 0.99124 0.93233 0.94023 0.89450 1.22249 0.95082 1.00421 0.97109 1.21996 0.99325 0.97093 1.00962 1.20410 0.98165 0.92885 1.01038 1.21584 0.98500 0.98665 0.96997 1.21670 1.00392 0.96015 0.97228 0.95237 0.93425 0.98404 0.93622 0.93394 0.94041 0.92329 0.91472 0.77290 0.88947 0.89049 0.86907 0.88252 0.91538 0.91326 0.91722 0.91836 0.91658 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 9.01 59.85 0.54 4.57 16 2 N -0.60 -15.05 2.93 -181.12 -0.53 -15.58 16 3 C -0.26 -7.18 9.67 -15.06 -0.15 -7.33 16 4 H 0.07 1.87 7.84 -52.49 -0.41 1.46 16 5 C 0.00 0.09 5.13 -17.43 -0.09 0.00 16 6 N -0.91 -26.73 10.58 55.49 0.59 -26.14 16 7 Si 0.91 22.05 29.57 -169.99 -5.03 17.03 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.14 2.86 5.82 -4.04 -0.02 2.84 16 12 C 0.09 1.86 6.00 -4.05 -0.02 1.83 16 13 N -0.73 -10.85 5.56 -60.30 -0.33 -11.18 16 14 C 0.50 7.71 7.46 -10.99 -0.08 7.63 16 15 O -0.54 -10.72 14.24 5.55 0.08 -10.64 16 16 C -0.13 -1.41 5.14 -27.89 -0.14 -1.55 16 17 C -0.04 -0.49 2.12 -92.06 -0.19 -0.68 16 18 H 0.09 1.12 7.96 -51.93 -0.41 0.70 16 19 C -0.13 -1.68 8.41 -35.90 -0.30 -1.98 16 20 C -0.18 -1.97 9.80 -35.90 -0.35 -2.32 16 21 C -0.09 -0.78 6.12 -28.18 -0.17 -0.95 16 22 C -0.12 -1.00 6.01 -26.52 -0.16 -1.15 16 23 C -0.12 -0.98 5.30 -26.51 -0.14 -1.12 16 24 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 25 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 26 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 27 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 29 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 32 H 0.39 4.44 8.47 -40.82 -0.35 4.09 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.11 1.76 6.47 -52.48 -0.34 1.42 16 36 H 0.10 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -32.27 337.01 -8.72 -40.99 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.28 Total: 0.66 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.29 Total: -0.20 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.28 Total: -52.91 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.27 -8.72 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267203078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.961 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds